Wall clock time and date at job start Tue Mar 31 2020 15:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 C 1.53002 * 109.47080 * 240.00091 * 2 1 3 5 5 C 1.50698 * 109.47454 * 119.99954 * 2 1 3 6 6 C 1.34337 * 126.44161 * 59.99380 * 5 2 1 7 7 N 1.34478 * 107.66810 * 179.72743 * 6 5 2 8 8 C 1.30257 * 108.70239 * 0.42862 * 7 6 5 9 9 C 1.50693 * 125.62059 * 179.83732 * 8 7 6 10 10 N 1.46504 * 109.47206 * 89.69517 * 9 8 7 11 11 C 1.34775 * 120.00020 * 179.97438 * 10 9 8 12 12 O 1.21617 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47433 * 120.00159 * 179.97438 * 11 10 9 14 14 C 1.39222 * 120.27950 * 355.67294 * 13 11 10 15 15 C 1.38228 * 120.09079 * 180.27937 * 14 13 11 16 16 C 1.38824 * 120.67423 * 359.71805 * 15 14 13 17 17 C 1.37597 * 120.57318 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87929 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.32596 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99615 * 216.32947 * 19 18 17 21 21 C 1.40267 * 120.00197 * 36.33258 * 19 18 17 22 22 N 1.30625 * 120.00058 * 190.50733 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 10.50211 * 21 19 18 24 24 H 1.48509 * 109.46965 * 267.22708 * 23 21 19 25 25 H 1.48499 * 109.47061 * 27.22336 * 23 21 19 26 26 H 1.48502 * 109.47123 * 147.22806 * 23 21 19 27 27 O 1.33971 * 108.75722 * 359.57051 * 8 7 6 28 28 H 1.09001 * 109.47198 * 299.99769 * 1 2 3 29 29 H 1.08997 * 109.47182 * 59.99693 * 1 2 3 30 30 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47480 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47280 * 300.00247 * 3 2 1 33 33 H 1.09003 * 109.47310 * 59.99814 * 3 2 1 34 34 H 1.09000 * 109.46647 * 299.99949 * 4 2 1 35 35 H 1.08997 * 109.46936 * 60.00066 * 4 2 1 36 36 H 1.09002 * 109.46782 * 179.97438 * 4 2 1 37 37 H 1.07999 * 126.16555 * 359.97438 * 6 5 2 38 38 H 1.08992 * 109.47584 * 329.69292 * 9 8 7 39 39 H 1.09004 * 109.47483 * 209.69041 * 9 8 7 40 40 H 0.97001 * 119.99703 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.95839 * 359.97438 * 14 13 11 42 42 H 1.08003 * 119.66408 * 179.73476 * 15 14 13 43 43 H 1.08000 * 119.71145 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.06329 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00012 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7889 -1.9871 1.5701 7 7 2.4224 -2.2284 2.7315 8 6 3.0315 -1.1406 3.1089 9 6 3.8543 -0.9850 4.3617 10 7 5.2485 -1.3333 4.0766 11 6 6.1732 -1.2671 5.0549 12 8 5.8502 -0.9187 6.1744 13 6 7.5761 -1.6182 4.7682 14 6 7.9359 -2.1044 3.5143 15 6 9.2514 -2.4378 3.2515 16 6 10.2283 -2.2880 4.2264 17 6 9.9043 -1.8049 5.4734 18 6 8.5724 -1.4582 5.7665 19 6 8.2303 -0.9622 7.0401 20 1 7.2839 -1.2289 7.4871 21 6 9.1185 -0.1219 7.7274 22 7 8.9014 0.1721 8.9815 23 14 10.6120 0.5766 6.8493 24 1 11.7767 -0.3194 7.0645 25 1 10.3284 0.6792 5.3953 26 1 10.9185 1.9253 7.3903 27 8 2.8106 -0.1846 2.1967 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.1950 -2.6936 1.0093 38 1 3.4658 -1.6462 5.1361 39 1 3.8010 0.0480 4.7056 40 1 5.5061 -1.6116 3.1838 41 1 7.1854 -2.2260 2.7473 42 1 9.5221 -2.8185 2.2777 43 1 11.2514 -2.5529 4.0042 44 1 10.6709 -1.6913 6.2256 45 1 9.5155 0.7536 9.4567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601269217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:38 Heat of formation + Delta-G solvation = -22.264323 kcal Electronic energy + Delta-G solvation = -27175.155201 eV Core-core repulsion = 23350.929455 eV Total energy + Delta-G solvation = -3824.225747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.53399 -40.87238 -38.85037 -38.04708 -36.22944 -35.79395 -35.35971 -32.40436 -32.28346 -30.79443 -28.43909 -28.19867 -27.83512 -26.91746 -24.13978 -23.83815 -23.05981 -22.44928 -21.33393 -20.68428 -19.53852 -18.76730 -17.99563 -17.74131 -17.16524 -16.73866 -16.42046 -16.06304 -15.83091 -15.70688 -15.35474 -15.10957 -14.96317 -14.61049 -14.41550 -14.36364 -14.19396 -13.98380 -13.69354 -13.24055 -13.21745 -13.14706 -12.69717 -12.63899 -12.61213 -12.53147 -12.48181 -12.21765 -12.06085 -12.03167 -11.94104 -11.62145 -11.51442 -11.09146 -10.48456 -10.20558 -9.78822 -9.55244 -9.42938 -8.82638 -6.49156 0.21571 0.31047 0.82722 1.24785 1.37920 1.39557 1.47329 1.51182 2.10198 2.20006 2.41623 2.69871 2.85958 3.48994 3.52670 3.77861 3.91103 3.93769 4.03409 4.17657 4.20785 4.30761 4.39059 4.46757 4.59669 4.65469 4.70543 4.71818 4.80324 4.82174 4.82232 4.94609 4.98708 4.99322 5.05249 5.17419 5.23624 5.28853 5.32698 5.35121 5.35372 5.44708 5.66582 5.84610 5.94483 6.25222 6.45570 6.56252 6.60259 6.76220 6.84386 7.49967 8.21370 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.002742 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.916615 B =10209.772686 C =10649.325115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.021 4.021 6 C -0.051 4.051 7 N -0.479 5.479 8 C 0.160 3.840 9 C 0.229 3.771 10 N -0.725 5.725 11 C 0.562 3.438 12 O -0.568 6.568 13 C -0.265 4.265 14 C -0.040 4.040 15 C -0.231 4.231 16 C -0.060 4.060 17 C -0.245 4.245 18 C 0.101 3.899 19 C -0.448 4.448 20 H 0.075 0.925 21 C 0.037 3.963 22 N -0.846 5.846 23 Si 0.966 3.034 24 H -0.247 1.247 25 H -0.249 1.249 26 H -0.280 1.280 27 O -0.200 6.200 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.210 0.790 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.407 0.593 41 H 0.132 0.868 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.104 0.896 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.877 0.137 -23.185 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 C -0.204 4.204 4 C -0.195 4.195 5 C -0.075 4.075 6 C -0.190 4.190 7 N -0.210 5.210 8 C -0.045 4.045 9 C 0.104 3.896 10 N -0.382 5.382 11 C 0.356 3.644 12 O -0.448 6.448 13 C -0.270 4.270 14 C -0.058 4.058 15 C -0.250 4.250 16 C -0.078 4.078 17 C -0.264 4.264 18 C 0.097 3.903 19 C -0.477 4.477 20 H 0.093 0.907 21 C -0.178 4.178 22 N -0.472 5.472 23 Si 0.788 3.212 24 H -0.172 1.172 25 H -0.172 1.172 26 H -0.207 1.207 27 O -0.086 6.086 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.227 0.773 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.243 0.757 41 H 0.150 0.850 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.122 0.878 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.079 0.006 -21.740 24.870 hybrid contribution 0.452 0.805 0.098 0.928 sum -11.628 0.811 -21.642 24.581 Atomic orbital electron populations 1.21952 0.90615 1.03589 1.03353 1.19412 0.96962 0.94999 0.86983 1.21904 1.01088 0.94214 1.03194 1.21955 1.01163 1.01136 0.95282 1.24274 0.95882 0.94802 0.92559 1.23486 1.04649 0.96315 0.94554 1.70466 1.10660 1.26391 1.13468 1.25774 1.01969 0.82473 0.94331 1.19245 0.79247 1.03267 0.87809 1.45719 1.06774 1.71745 1.13927 1.18464 0.85945 0.76503 0.83537 1.90752 1.81701 1.48912 1.23451 1.19672 0.92460 1.18483 0.96386 1.21173 0.97084 0.93873 0.93703 1.20921 0.92506 1.10908 1.00640 1.21253 0.99899 0.94577 0.92063 1.21262 0.95874 1.10247 0.98984 1.17801 0.91903 0.89124 0.91457 1.19967 1.03891 1.24482 0.99317 0.90688 1.27109 1.00733 0.95307 0.94608 1.69622 1.37460 1.29517 1.10628 0.85503 0.77796 0.77483 0.80397 1.17192 1.17250 1.20676 1.84431 1.54062 1.41496 1.28579 0.93148 0.88927 0.90971 0.93232 0.89171 0.93197 0.90959 0.88945 0.93102 0.77323 0.88145 0.89112 0.75675 0.85048 0.83923 0.84430 0.87827 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.35 71.98 0.60 -0.66 16 2 C 0.02 0.22 0.93 -52.93 -0.05 0.17 16 3 C -0.15 -2.00 8.06 71.98 0.58 -1.42 16 4 C -0.14 -1.29 8.35 71.98 0.60 -0.69 16 5 C -0.02 -0.44 5.70 24.79 0.14 -0.30 16 6 C -0.05 -1.09 11.24 83.40 0.94 -0.15 16 7 N -0.48 -13.59 11.29 -303.83 -3.43 -17.02 16 8 C 0.16 4.62 7.71 88.34 0.68 5.30 16 9 C 0.23 7.36 6.30 85.63 0.54 7.90 16 10 N -0.72 -25.81 5.50 -470.10 -2.58 -28.39 16 11 C 0.56 26.21 7.72 86.67 0.67 26.88 16 12 O -0.57 -31.76 13.54 -4.08 -0.06 -31.82 16 13 C -0.27 -12.40 5.92 -19.70 -0.12 -12.52 16 14 C -0.04 -1.46 9.52 22.50 0.21 -1.25 16 15 C -0.23 -7.84 10.03 22.41 0.22 -7.62 16 16 C -0.06 -2.22 10.01 22.26 0.22 -1.99 16 17 C -0.24 -11.21 7.00 22.72 0.16 -11.05 16 18 C 0.10 5.31 5.03 -21.11 -0.11 5.20 16 19 C -0.45 -26.80 8.31 23.41 0.19 -26.60 16 20 H 0.08 5.11 5.96 -2.91 -0.02 5.09 16 21 C 0.04 2.07 5.47 85.37 0.47 2.54 16 22 N -0.85 -49.14 13.92 21.88 0.30 -48.83 16 23 Si 0.97 43.46 24.52 68.60 1.68 45.14 16 24 H -0.25 -10.14 6.76 99.48 0.67 -9.46 16 25 H -0.25 -11.26 6.73 99.48 0.67 -10.59 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 O -0.20 -5.30 10.24 -3.73 -0.04 -5.34 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.55 8.02 -2.39 -0.02 0.53 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.56 8.02 -2.39 -0.02 0.54 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.41 12.37 6.51 -92.71 -0.60 11.76 16 41 H 0.13 3.81 6.42 -2.91 -0.02 3.79 16 42 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 43 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 44 H 0.10 4.71 5.01 -2.91 -0.01 4.69 16 45 H 0.29 15.21 8.29 -92.71 -0.77 14.45 16 Total: -1.00 -73.92 370.95 2.18 -71.74 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.34 Total: 30.77 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.96 Total: -16.25 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -5.71 Total: -94.24 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.09 Total: -37.16 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.68 Total: 45.14 kcal Total: -73.92 2.18 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601269217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.476 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds