Wall clock time and date at job start Tue Mar 31 2020 15:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.47339 * 2 1 4 4 C 1.50690 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.30261 * 125.62051 * 89.97905 * 4 3 2 6 6 C 1.34474 * 108.70213 * 179.77770 * 5 4 3 7 7 C 1.50699 * 126.16756 * 180.26947 * 6 5 4 8 8 C 1.34330 * 107.66862 * 0.39135 * 6 5 4 9 9 C 1.50698 * 126.44432 * 179.88339 * 8 6 5 10 10 N 1.46494 * 109.47597 * 89.70792 * 9 8 6 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 O 1.33970 * 125.61985 * 270.00060 * 4 3 2 28 28 H 1.09001 * 109.47249 * 299.99984 * 1 2 3 29 29 H 1.08999 * 109.46849 * 59.99629 * 1 2 3 30 30 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46850 * 240.00361 * 2 1 3 32 32 H 1.08994 * 109.47440 * 119.99979 * 2 1 3 33 33 H 1.09001 * 109.46936 * 59.99824 * 3 2 1 34 34 H 1.09004 * 109.46708 * 300.00501 * 3 2 1 35 35 H 1.09000 * 109.47007 * 270.14166 * 7 6 5 36 36 H 1.08997 * 109.47256 * 30.14201 * 7 6 5 37 37 H 1.08999 * 109.47054 * 150.14412 * 7 6 5 38 38 H 1.09004 * 109.46984 * 329.70688 * 9 8 6 39 39 H 1.09005 * 109.47130 * 209.70988 * 9 8 6 40 40 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 42 42 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 43 43 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3052 1.4423 -1.0598 6 6 5.5919 1.4473 -0.6691 7 6 6.7964 1.4546 -1.5747 8 6 5.6101 1.4420 0.6741 9 6 6.8343 1.4422 1.5528 10 7 7.2310 2.8234 1.8375 11 6 8.3072 3.0698 2.6106 12 8 8.9492 2.1455 3.0714 13 6 8.7060 4.4598 2.8975 14 6 8.0173 5.5219 2.3175 15 6 8.3982 6.8234 2.5846 16 6 9.4628 7.0894 3.4350 17 6 10.1590 6.0611 4.0277 18 6 9.7921 4.7270 3.7714 19 6 10.4988 3.6668 4.3727 20 1 9.9791 2.7635 4.6560 21 6 11.8774 3.7845 4.6033 22 7 12.5755 4.6739 3.9489 23 14 12.7151 2.6695 5.8460 24 1 14.1637 2.9918 5.9029 25 1 12.1084 2.8771 7.1854 26 1 12.5395 1.2527 5.4373 27 8 4.3277 1.4424 1.0881 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 7.0899 0.4287 -1.7971 36 1 6.5504 1.9714 -2.5023 37 1 7.6201 1.9689 -1.0796 38 1 7.6485 0.9284 1.0417 39 1 6.6106 0.9284 2.4878 40 1 6.7191 3.5606 1.4696 41 1 7.1874 5.3282 1.6540 42 1 7.8620 7.6417 2.1274 43 1 9.7470 8.1123 3.6333 44 1 10.9856 6.2774 4.6882 45 1 12.1568 5.2013 3.2507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601599935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:50 Heat of formation + Delta-G solvation = -17.943501 kcal Electronic energy + Delta-G solvation = -26960.600286 eV Core-core repulsion = 23136.561905 eV Total energy + Delta-G solvation = -3824.038382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.49808 -39.09768 -37.11069 -35.79267 -35.32060 -34.50037 -33.85193 -31.73288 -30.17518 -29.44585 -28.65085 -27.98395 -25.36243 -24.43248 -22.53207 -22.20266 -21.57802 -20.98823 -20.59798 -19.64364 -18.19804 -17.03748 -16.86380 -16.27556 -15.56677 -15.34529 -15.10960 -14.80756 -14.35293 -14.23964 -14.02735 -13.81404 -13.64477 -13.43997 -13.34337 -13.05253 -12.69237 -12.64619 -12.39680 -12.24041 -12.19037 -11.99467 -11.77348 -11.75126 -11.16800 -11.15965 -10.97107 -10.95600 -10.78774 -10.62743 -10.38704 -10.21097 -9.68374 -9.11453 -8.91650 -8.59489 -8.46075 -7.83624 -7.64725 -7.18630 -4.50493 1.21654 2.18433 2.43286 2.50201 2.70574 3.18771 3.28911 3.39170 3.71986 3.93334 3.97837 4.02352 4.47296 4.55003 4.59405 4.60931 4.72630 4.84961 5.07263 5.20394 5.23970 5.34457 5.40187 5.43318 5.51178 5.58831 5.61467 5.69340 5.75161 5.82863 5.84934 5.90228 5.99755 6.02266 6.13042 6.24277 6.44139 6.67749 6.87089 6.95519 7.23401 7.45267 7.55644 7.60509 7.68390 7.84322 8.03039 8.16094 8.25718 8.68385 8.81424 9.23038 10.00555 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.002655 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.947657 B =10543.901623 C =11188.017829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.022 4.022 4 C 0.194 3.806 5 N -0.481 5.481 6 C 0.008 3.992 7 C -0.076 4.076 8 C -0.062 4.062 9 C 0.214 3.786 10 N -0.747 5.747 11 C 0.567 3.433 12 O -0.534 6.534 13 C -0.266 4.266 14 C -0.042 4.042 15 C -0.259 4.259 16 C -0.075 4.075 17 C -0.200 4.200 18 C 0.121 3.879 19 C -0.465 4.465 20 H 0.106 0.894 21 C 0.031 3.969 22 N -0.791 5.791 23 Si 1.070 2.930 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.272 1.272 27 O -0.194 6.194 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.394 0.606 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.343 -5.953 -7.497 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.060 4.060 4 C -0.013 4.013 5 N -0.211 5.211 6 C -0.113 4.113 7 C -0.133 4.133 8 C -0.115 4.115 9 C 0.090 3.910 10 N -0.404 5.404 11 C 0.361 3.639 12 O -0.412 6.412 13 C -0.271 4.271 14 C -0.061 4.061 15 C -0.278 4.278 16 C -0.094 4.094 17 C -0.219 4.219 18 C 0.116 3.884 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.191 4.191 22 N -0.414 5.414 23 Si 0.893 3.107 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.198 1.198 27 O -0.081 6.081 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.229 0.771 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.598 -6.929 -7.016 17.616 hybrid contribution -1.643 0.893 -0.430 1.918 sum -16.240 -6.036 -7.446 18.858 Atomic orbital electron populations 1.21754 0.94583 1.02279 1.02227 1.21542 0.96500 0.94753 1.03225 1.20177 0.81114 0.99498 1.05257 1.26233 0.96125 1.00172 0.78806 1.70367 1.01555 1.18890 1.30240 1.21601 0.93400 1.04172 0.92087 1.20193 0.91978 1.03095 0.98033 1.23278 0.83620 1.09696 0.94933 1.19367 0.87977 0.86421 0.97245 1.46117 1.32415 1.06184 1.55644 1.18395 0.78515 0.90057 0.76896 1.90692 1.52587 1.46319 1.51642 1.19309 1.08134 0.89953 1.09697 1.20714 0.96149 0.93072 0.96177 1.20244 1.03527 0.95155 1.08870 1.20752 0.95147 0.97314 0.96167 1.21257 1.03391 0.92542 1.04682 1.17494 0.90443 0.92519 0.87911 1.21182 0.95263 1.02982 1.29733 0.87666 1.27284 0.95427 0.97501 0.98884 1.70394 1.40951 1.14929 1.15170 0.83558 0.76158 0.75737 0.75214 1.19913 1.19935 1.19753 1.84412 1.16504 1.69622 1.37513 0.92319 0.92287 0.92167 0.91049 0.91381 0.88811 0.87629 0.90522 0.90466 0.90115 0.88570 0.90208 0.77134 0.89257 0.88869 0.88811 0.87467 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 4 C 0.19 2.40 7.60 -12.95 -0.10 2.30 16 5 N -0.48 -6.68 11.29 -7.36 -0.08 -6.76 16 6 C 0.01 0.11 7.11 -82.81 -0.59 -0.47 16 7 C -0.08 -0.87 10.05 36.01 0.36 -0.51 16 8 C -0.06 -0.89 6.75 -35.69 -0.24 -1.13 16 9 C 0.21 3.30 5.83 -5.20 -0.03 3.27 16 10 N -0.75 -13.27 5.50 -62.56 -0.34 -13.62 16 11 C 0.57 12.85 7.73 -12.52 -0.10 12.76 16 12 O -0.53 -13.71 13.56 5.27 0.07 -13.63 16 13 C -0.27 -6.39 5.92 -104.36 -0.62 -7.01 16 14 C -0.04 -0.89 9.53 -39.22 -0.37 -1.26 16 15 C -0.26 -5.40 10.03 -39.37 -0.39 -5.79 16 16 C -0.07 -1.64 10.01 -39.60 -0.40 -2.04 16 17 C -0.20 -4.92 7.87 -38.88 -0.31 -5.22 16 18 C 0.12 3.18 5.17 -106.54 -0.55 2.62 16 19 C -0.46 -12.59 7.65 -37.81 -0.29 -12.87 16 20 H 0.11 2.97 5.92 -52.49 -0.31 2.66 16 21 C 0.03 0.79 5.04 -17.30 -0.09 0.71 16 22 N -0.79 -20.93 12.57 55.56 0.70 -20.23 16 23 Si 1.07 22.23 29.98 -169.99 -5.10 17.14 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 O -0.19 -2.74 10.78 5.35 0.06 -2.69 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.95 7.80 -51.93 -0.40 0.54 16 38 H 0.10 1.43 7.81 -51.93 -0.41 1.03 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.39 6.41 6.51 -40.82 -0.27 6.14 16 41 H 0.09 1.59 6.41 -52.49 -0.34 1.25 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.11 2.69 6.94 -52.49 -0.36 2.32 16 45 H 0.30 8.07 6.55 -40.82 -0.27 7.80 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -30.69 378.43 -8.88 -39.57 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.22 Total: 10.95 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.66 Total: -16.43 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.27 Total: -40.61 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.13 Total: -16.32 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.10 Total: 17.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.69 -8.88 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601599935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.630 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds