Wall clock time and date at job start Tue Mar 31 2020 15:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.47339 * 2 1 4 4 C 1.50690 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.30261 * 125.62051 * 89.97905 * 4 3 2 6 6 C 1.34474 * 108.70213 * 179.77770 * 5 4 3 7 7 C 1.50699 * 126.16756 * 180.26947 * 6 5 4 8 8 C 1.34330 * 107.66862 * 0.39135 * 6 5 4 9 9 C 1.50698 * 126.44432 * 179.88339 * 8 6 5 10 10 N 1.46494 * 109.47597 * 89.70792 * 9 8 6 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 O 1.33970 * 125.61985 * 270.00060 * 4 3 2 28 28 H 1.09001 * 109.47249 * 299.99984 * 1 2 3 29 29 H 1.08999 * 109.46849 * 59.99629 * 1 2 3 30 30 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46850 * 240.00361 * 2 1 3 32 32 H 1.08994 * 109.47440 * 119.99979 * 2 1 3 33 33 H 1.09001 * 109.46936 * 59.99824 * 3 2 1 34 34 H 1.09004 * 109.46708 * 300.00501 * 3 2 1 35 35 H 1.09000 * 109.47007 * 270.14166 * 7 6 5 36 36 H 1.08997 * 109.47256 * 30.14201 * 7 6 5 37 37 H 1.08999 * 109.47054 * 150.14412 * 7 6 5 38 38 H 1.09004 * 109.46984 * 329.70688 * 9 8 6 39 39 H 1.09005 * 109.47130 * 209.70988 * 9 8 6 40 40 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 41 41 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 42 42 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 43 43 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3052 1.4423 -1.0598 6 6 5.5919 1.4473 -0.6691 7 6 6.7964 1.4546 -1.5747 8 6 5.6101 1.4420 0.6741 9 6 6.8343 1.4422 1.5528 10 7 7.2310 2.8234 1.8375 11 6 8.3072 3.0698 2.6106 12 8 8.9492 2.1455 3.0714 13 6 8.7060 4.4598 2.8975 14 6 8.0173 5.5219 2.3175 15 6 8.3982 6.8234 2.5846 16 6 9.4628 7.0894 3.4350 17 6 10.1590 6.0611 4.0277 18 6 9.7921 4.7270 3.7714 19 6 10.4988 3.6668 4.3727 20 1 9.9791 2.7635 4.6560 21 6 11.8774 3.7845 4.6033 22 7 12.5755 4.6739 3.9489 23 14 12.7151 2.6695 5.8460 24 1 14.1637 2.9918 5.9029 25 1 12.1084 2.8771 7.1854 26 1 12.5395 1.2527 5.4373 27 8 4.3277 1.4424 1.0881 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 7.0899 0.4287 -1.7971 36 1 6.5504 1.9714 -2.5023 37 1 7.6201 1.9689 -1.0796 38 1 7.6485 0.9284 1.0417 39 1 6.6106 0.9284 2.4878 40 1 6.7191 3.5606 1.4696 41 1 7.1874 5.3282 1.6540 42 1 7.8620 7.6417 2.1274 43 1 9.7470 8.1123 3.6333 44 1 10.9856 6.2774 4.6882 45 1 12.1568 5.2013 3.2507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601599935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:49 Heat of formation + Delta-G solvation = -37.234124 kcal Electronic energy + Delta-G solvation = -26961.436790 eV Core-core repulsion = 23136.561905 eV Total energy + Delta-G solvation = -3824.874886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.54091 -40.85978 -38.87801 -36.65300 -36.40128 -35.99179 -35.49571 -32.92318 -31.82341 -31.23002 -29.49951 -29.12261 -27.12691 -25.63471 -23.99781 -23.22558 -22.79162 -22.41926 -21.61443 -21.33291 -20.01926 -18.51591 -18.01046 -17.46583 -16.87049 -16.56792 -16.44112 -16.09858 -15.85255 -15.82146 -15.48088 -15.44684 -14.66362 -14.49911 -14.41160 -14.29167 -14.11369 -13.93795 -13.85007 -13.51780 -13.27965 -12.97446 -12.92928 -12.71377 -12.67989 -12.51726 -12.31886 -12.03296 -11.96197 -11.91818 -11.71482 -11.65370 -11.49308 -10.96872 -10.52551 -10.18215 -9.75832 -9.64169 -9.51115 -9.11649 -6.47483 0.15079 0.36544 0.89151 1.40423 1.47858 1.49068 1.62543 1.77667 2.19192 2.31173 2.42718 2.73058 2.85290 3.46385 3.53871 3.69132 3.93614 3.98528 4.06317 4.10905 4.20398 4.25470 4.38563 4.47722 4.51750 4.63862 4.64546 4.67515 4.72759 4.76600 4.85652 4.88391 4.90831 4.98555 5.11554 5.16161 5.21683 5.30965 5.35529 5.40610 5.41057 5.63470 5.68375 5.86758 5.94625 6.17141 6.31134 6.56529 6.59174 6.80649 6.88449 7.48481 8.03778 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.002655 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.947657 B =10543.901623 C =11188.017829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.023 4.023 4 C 0.205 3.795 5 N -0.503 5.503 6 C 0.013 3.987 7 C -0.076 4.076 8 C -0.082 4.082 9 C 0.220 3.780 10 N -0.727 5.727 11 C 0.565 3.435 12 O -0.571 6.571 13 C -0.283 4.283 14 C -0.042 4.042 15 C -0.245 4.245 16 C -0.071 4.071 17 C -0.224 4.224 18 C 0.096 3.904 19 C -0.507 4.507 20 H 0.083 0.917 21 C -0.002 4.002 22 N -0.814 5.814 23 Si 1.115 2.885 24 H -0.265 1.265 25 H -0.260 1.260 26 H -0.270 1.270 27 O -0.206 6.206 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.404 0.596 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.900 -5.115 -8.800 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.061 4.061 4 C -0.002 4.002 5 N -0.233 5.233 6 C -0.108 4.108 7 C -0.133 4.133 8 C -0.135 4.135 9 C 0.096 3.904 10 N -0.382 5.382 11 C 0.358 3.642 12 O -0.452 6.452 13 C -0.288 4.288 14 C -0.060 4.060 15 C -0.264 4.264 16 C -0.089 4.089 17 C -0.243 4.243 18 C 0.092 3.908 19 C -0.535 4.535 20 H 0.101 0.899 21 C -0.218 4.218 22 N -0.438 5.438 23 Si 0.932 3.068 24 H -0.189 1.189 25 H -0.184 1.184 26 H -0.195 1.195 27 O -0.094 6.094 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.240 0.760 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.109 0.891 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.203 -6.070 -8.354 20.064 hybrid contribution -1.163 0.724 -0.211 1.386 sum -18.365 -5.347 -8.565 20.958 Atomic orbital electron populations 1.21731 0.92891 1.02816 1.03006 1.21503 0.97850 0.93851 1.02404 1.20498 0.78259 1.00475 1.06876 1.27205 0.97493 0.97510 0.78018 1.70432 1.01668 1.20340 1.30832 1.21957 0.94123 1.02593 0.92123 1.20271 0.90968 1.04104 0.97926 1.22925 0.83449 1.12270 0.94820 1.19309 0.88974 0.84744 0.97353 1.45847 1.30741 1.07784 1.53863 1.18359 0.79250 0.89367 0.77190 1.90675 1.54176 1.47155 1.53192 1.19702 1.07877 0.91745 1.09452 1.21101 0.96586 0.92465 0.95872 1.20786 1.02341 0.96235 1.07020 1.21157 0.94550 0.98139 0.95084 1.21219 1.04152 0.92907 1.06013 1.17887 0.91369 0.93193 0.88315 1.21110 0.96178 1.02930 1.33258 0.89919 1.28470 0.95741 0.98030 0.99570 1.70502 1.40585 1.16656 1.16079 0.83026 0.75751 0.74111 0.73868 1.18925 1.18435 1.19508 1.84408 1.16558 1.70055 1.38337 0.91601 0.91445 0.91811 0.91940 0.92202 0.87074 0.86043 0.89119 0.89528 0.90540 0.88102 0.90868 0.75971 0.85446 0.84759 0.85688 0.89089 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.46 16 2 C -0.12 -1.44 5.92 30.60 0.18 -1.26 16 3 C -0.02 -0.32 5.84 29.85 0.17 -0.14 16 4 C 0.20 4.69 7.60 88.34 0.67 5.36 16 5 N -0.50 -13.09 11.29 -291.98 -3.30 -16.39 16 6 C 0.01 0.33 7.11 41.26 0.29 0.62 16 7 C -0.08 -1.61 10.05 71.24 0.72 -0.90 16 8 C -0.08 -2.27 6.75 24.79 0.17 -2.11 16 9 C 0.22 6.73 5.83 85.63 0.50 7.22 16 10 N -0.73 -25.32 5.50 -470.10 -2.58 -27.90 16 11 C 0.56 25.94 7.73 86.67 0.67 26.61 16 12 O -0.57 -30.47 13.56 -4.06 -0.06 -30.52 16 13 C -0.28 -13.61 5.92 -19.70 -0.12 -13.73 16 14 C -0.04 -1.65 9.53 22.51 0.21 -1.43 16 15 C -0.24 -9.32 10.03 22.41 0.22 -9.09 16 16 C -0.07 -2.96 10.01 22.26 0.22 -2.74 16 17 C -0.22 -11.22 7.87 22.72 0.18 -11.04 16 18 C 0.10 5.23 5.17 -21.11 -0.11 5.12 16 19 C -0.51 -28.93 7.65 23.41 0.18 -28.75 16 20 H 0.08 4.97 5.92 -2.91 -0.02 4.96 16 21 C 0.00 -0.13 5.04 85.37 0.43 0.30 16 22 N -0.81 -45.03 12.57 21.88 0.28 -44.75 16 23 Si 1.12 46.54 29.98 68.60 2.06 48.59 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 O -0.21 -5.56 10.78 -3.78 -0.04 -5.60 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 38 H 0.10 3.01 7.81 -2.38 -0.02 2.99 16 39 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.40 12.34 6.51 -92.71 -0.60 11.74 16 41 H 0.13 4.01 6.41 -2.91 -0.02 3.99 16 42 H 0.13 4.08 8.06 -2.92 -0.02 4.06 16 43 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 44 H 0.09 4.77 6.94 -2.91 -0.02 4.75 16 45 H 0.28 16.13 6.55 -92.71 -0.61 15.52 16 Total: -1.00 -69.62 378.43 2.24 -67.38 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.58 Total: 35.60 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 5.31 Total: -26.40 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -5.61 Total: -89.04 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.10 Total: -36.13 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.06 Total: 48.59 kcal Total: -69.62 2.24 -67.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601599935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.145 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds