Wall clock time and date at job start Tue Mar 31 2020 16:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36470 * 119.18453 * 2 1 4 4 C 1.48293 * 118.86540 * 359.97438 * 3 2 1 5 5 O 1.21476 * 120.00349 * 352.93562 * 4 3 2 6 6 N 1.34776 * 119.99521 * 172.93326 * 4 3 2 7 7 C 1.46502 * 120.00062 * 185.08899 * 6 4 3 8 8 C 1.52991 * 109.47526 * 180.02562 * 7 6 4 9 9 C 1.53007 * 109.47221 * 299.99887 * 8 7 6 10 10 C 1.53005 * 109.47224 * 60.00048 * 8 7 6 11 11 C 1.50698 * 109.47439 * 180.02562 * 8 7 6 12 12 H 1.08001 * 120.00324 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00082 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00300 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99932 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47505 * 89.99487 * 15 13 11 17 17 H 1.48500 * 109.46892 * 209.99946 * 15 13 11 18 18 H 1.48508 * 109.47231 * 329.99091 * 15 13 11 19 19 C 1.35675 * 122.26186 * 179.97438 * 3 2 1 20 20 C 1.42056 * 119.93179 * 0.02562 * 19 3 2 21 21 O 1.21939 * 121.06311 * 179.97438 * 20 19 3 22 22 C 1.47212 * 117.86714 * 0.25407 * 20 19 3 23 23 C 1.39583 * 121.36302 * 180.31005 * 22 20 19 24 24 C 1.36644 * 119.69941 * 179.68756 * 23 22 20 25 25 C 1.38890 * 120.55390 * 359.72670 * 24 23 22 26 26 C 1.37706 * 120.71871 * 0.02562 * 25 24 23 27 27 C 1.37490 * 119.18384 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47593 * 82.22443 * 1 2 3 29 29 H 1.09005 * 109.46785 * 202.22754 * 1 2 3 30 30 H 1.09005 * 109.46850 * 322.22248 * 1 2 3 31 31 H 0.97007 * 120.00518 * 5.09100 * 6 4 3 32 32 H 1.09000 * 109.46833 * 300.00056 * 7 6 4 33 33 H 1.08998 * 109.47020 * 59.99515 * 7 6 4 34 34 H 1.09004 * 109.46397 * 59.99976 * 9 8 7 35 35 H 1.08994 * 109.47117 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46654 * 300.00278 * 9 8 7 37 37 H 1.08992 * 109.47069 * 59.99930 * 10 8 7 38 38 H 1.09004 * 109.47121 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.46984 * 299.99880 * 10 8 7 40 40 H 0.96995 * 120.00450 * 180.02562 * 14 13 11 41 41 H 1.08002 * 120.03136 * 180.02562 * 19 3 2 42 42 H 1.08005 * 120.15045 * 359.39467 * 23 22 20 43 43 H 1.07996 * 119.72438 * 179.75767 * 24 23 22 44 44 H 1.08000 * 119.63408 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.13893 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1304 1.1915 0.0000 4 6 1.3457 2.4497 -0.0006 5 8 0.1385 2.4127 -0.1304 6 7 1.9720 3.6345 0.1430 7 6 1.1894 4.8680 0.2544 8 6 2.1358 6.0604 0.4067 9 6 2.9852 5.8798 1.6664 10 6 3.0502 6.1454 -0.8171 11 6 1.3308 7.3291 0.5220 12 1 0.2520 7.2891 0.4894 13 6 1.9715 8.5413 0.6679 14 7 3.2852 8.5902 0.7070 15 14 0.9736 10.1138 0.8115 16 1 0.6742 10.3814 2.2412 17 1 1.7512 11.2466 0.2481 18 1 -0.2979 9.9637 0.0591 19 6 3.4852 1.2643 0.0005 20 6 4.2591 0.0730 0.0005 21 8 5.4778 0.1144 0.0005 22 6 3.5426 -1.2130 -0.0058 23 6 4.2302 -2.4277 0.0002 24 6 3.5308 -3.6015 0.0005 25 6 2.1419 -3.5958 0.0006 26 6 1.4433 -2.4091 -0.0002 27 6 2.1354 -1.2004 0.0005 28 1 -0.3634 0.1390 -1.0182 29 1 -0.3633 -0.9514 0.3888 30 1 -0.3633 0.8123 0.6296 31 1 2.9409 3.6705 0.1725 32 1 0.5847 4.9969 -0.6432 33 1 0.5377 4.8072 1.1260 34 1 3.5675 4.9621 1.5834 35 1 3.6597 6.7291 1.7747 36 1 2.3338 5.8193 2.5382 37 1 2.4451 6.2740 -1.7145 38 1 3.7247 6.9947 -0.7084 39 1 3.6325 5.2277 -0.9000 40 1 3.7359 9.4429 0.8101 41 1 3.9748 2.2270 0.0009 42 1 5.3102 -2.4397 -0.0001 43 1 4.0623 -4.5416 0.0013 44 1 1.6040 -4.5324 0.0012 45 1 0.3633 -2.4156 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601623801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:35 Heat of formation + Delta-G solvation = -11.686123 kcal Electronic energy + Delta-G solvation = -27791.473826 eV Core-core repulsion = 23967.706784 eV Total energy + Delta-G solvation = -3823.767041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65008 -39.69611 -38.25736 -37.45380 -36.42969 -34.08628 -32.76514 -31.37602 -30.74725 -30.46233 -26.95364 -26.35137 -25.80349 -25.39041 -24.27970 -23.86893 -21.70918 -20.83452 -19.03479 -18.84589 -18.24950 -17.76094 -16.40295 -16.19684 -15.88556 -15.64928 -15.19400 -14.97461 -14.78407 -14.67453 -14.53105 -14.07388 -14.01416 -13.81577 -13.36949 -13.05508 -12.94019 -12.68348 -12.50086 -12.25806 -12.16285 -11.70625 -11.49030 -11.41411 -11.27567 -10.93975 -10.75360 -10.47808 -10.28085 -10.05688 -9.73399 -9.62464 -9.55859 -9.37045 -9.31879 -8.88245 -8.72520 -8.43342 -7.84158 -6.08216 -4.19336 0.30008 0.64594 1.33156 2.18060 2.67476 3.07249 3.21593 3.24457 3.32139 3.35655 3.78072 4.08565 4.27795 4.33835 4.49568 4.56047 4.69114 4.84586 4.99084 5.06806 5.18687 5.21692 5.26858 5.51311 5.56280 5.63427 5.69577 5.78275 6.01741 6.07595 6.14055 6.24371 6.35426 6.38261 6.50982 6.52842 6.72915 6.74810 6.80615 6.84042 6.91987 7.25562 7.47612 7.59140 7.66932 7.76398 7.93346 8.02794 8.16297 8.31642 8.80812 9.47089 10.93237 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002722 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.299910 B =10283.765470 C =11161.902591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.478 5.478 3 C 0.173 3.827 4 C 0.541 3.459 5 O -0.533 6.533 6 N -0.689 5.689 7 C 0.130 3.870 8 C 0.056 3.944 9 C -0.134 4.134 10 C -0.134 4.134 11 C -0.509 4.509 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.884 5.884 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.277 4.277 20 C 0.419 3.581 21 O -0.491 6.491 22 C -0.203 4.203 23 C -0.027 4.027 24 C -0.165 4.165 25 C -0.055 4.055 26 C -0.177 4.177 27 C 0.202 3.798 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.405 0.595 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.088 0.912 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.088 0.912 39 H 0.007 0.993 40 H 0.261 0.739 41 H 0.156 0.844 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -21.947 -1.045 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.167 5.167 3 C 0.061 3.939 4 C 0.325 3.675 5 O -0.413 6.413 6 N -0.340 5.340 7 C 0.008 3.992 8 C 0.056 3.944 9 C -0.192 4.192 10 C -0.192 4.192 11 C -0.547 4.547 12 H 0.076 0.924 13 C -0.134 4.134 14 N -0.522 5.522 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.304 4.304 20 C 0.306 3.694 21 O -0.373 6.373 22 C -0.207 4.207 23 C -0.045 4.045 24 C -0.184 4.184 25 C -0.074 4.074 26 C -0.198 4.198 27 C 0.099 3.901 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.243 0.757 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.107 0.893 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.107 0.893 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.096 -21.729 -1.102 21.976 hybrid contribution -0.163 0.894 0.068 0.911 sum -3.260 -20.835 -1.033 21.113 Atomic orbital electron populations 1.22802 0.75510 1.04889 1.05426 1.43013 1.08404 1.01999 1.63331 1.20048 0.92591 0.86378 0.94863 1.18001 0.87126 0.83482 0.78921 1.90712 1.13591 1.86600 1.50352 1.46325 1.11706 1.06282 1.69706 1.21952 0.94715 0.81546 1.00972 1.18383 0.92240 0.90826 0.92996 1.21872 0.99987 0.99625 0.97691 1.21868 0.99929 0.99965 0.97413 1.20924 0.92796 0.90321 1.50693 0.92352 1.24880 0.94923 0.98933 0.94705 1.69793 1.07126 1.25565 1.49693 0.86557 0.80130 0.82821 0.78274 1.20681 1.21216 1.19905 1.22431 0.91670 1.01770 1.14566 1.18416 0.88773 0.87476 0.74706 1.90715 1.14530 1.89299 1.42765 1.20408 0.91575 0.97025 1.11686 1.20869 1.00735 0.90417 0.92489 1.20868 0.94186 0.98376 1.05009 1.21136 0.94305 0.97422 0.94570 1.20827 1.00307 0.90253 1.08367 1.17987 0.91005 0.85232 0.95902 0.90368 0.90393 0.86462 0.75688 0.91832 0.91970 0.97434 0.89347 0.95272 0.95236 0.89339 0.97451 0.92855 0.82699 0.84384 0.85299 0.85085 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 8.82 59.85 0.53 1.07 16 2 N -0.48 -5.82 3.08 -117.79 -0.36 -6.18 16 3 C 0.17 2.41 6.62 -82.58 -0.55 1.86 16 4 C 0.54 8.46 7.62 -12.13 -0.09 8.37 16 5 O -0.53 -9.03 13.02 5.39 0.07 -8.96 16 6 N -0.69 -11.37 4.90 -61.11 -0.30 -11.67 16 7 C 0.13 2.51 4.51 -4.05 -0.02 2.49 16 8 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 9 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 10 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 11 C -0.51 -12.75 8.01 -34.44 -0.28 -13.03 16 12 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 14 N -0.88 -23.03 9.35 55.43 0.52 -22.52 16 15 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.28 -3.98 9.44 -39.04 -0.37 -4.35 16 20 C 0.42 6.43 6.97 -34.48 -0.24 6.19 16 21 O -0.49 -8.76 17.34 4.97 0.09 -8.67 16 22 C -0.20 -2.64 5.89 -104.81 -0.62 -3.26 16 23 C -0.03 -0.29 9.61 -39.66 -0.38 -0.67 16 24 C -0.17 -1.35 9.98 -39.92 -0.40 -1.75 16 25 C -0.06 -0.40 10.01 -39.53 -0.40 -0.80 16 26 C -0.18 -1.52 9.21 -39.39 -0.36 -1.89 16 27 C 0.20 2.34 6.53 -84.00 -0.55 1.79 16 28 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.08 0.54 5.74 -51.93 -0.30 0.24 16 30 H 0.12 1.37 5.64 -51.93 -0.29 1.08 16 31 H 0.40 6.31 4.09 -40.82 -0.17 6.15 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 35 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 39 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 40 H 0.26 6.60 8.31 -40.82 -0.34 6.27 16 41 H 0.16 2.13 6.23 -52.49 -0.33 1.80 16 42 H 0.14 1.44 7.78 -52.48 -0.41 1.03 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.14 0.86 6.00 -52.48 -0.31 0.54 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -28.84 357.74 -8.55 -37.39 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.65 Total: 6.46 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.29 Total: -6.41 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.14 Total: -40.36 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.16 Total: -17.63 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.84 -8.55 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.707 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds