Wall clock time and date at job start Tue Mar 31 2020 16:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36470 * 119.18453 * 2 1 4 4 C 1.48293 * 118.86540 * 359.97438 * 3 2 1 5 5 O 1.21476 * 120.00349 * 352.93562 * 4 3 2 6 6 N 1.34776 * 119.99521 * 172.93326 * 4 3 2 7 7 C 1.46502 * 120.00062 * 185.08899 * 6 4 3 8 8 C 1.52991 * 109.47526 * 180.02562 * 7 6 4 9 9 C 1.53007 * 109.47221 * 299.99887 * 8 7 6 10 10 C 1.53005 * 109.47224 * 60.00048 * 8 7 6 11 11 C 1.50698 * 109.47439 * 180.02562 * 8 7 6 12 12 H 1.08001 * 120.00324 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00082 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00300 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99932 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47505 * 89.99487 * 15 13 11 17 17 H 1.48500 * 109.46892 * 209.99946 * 15 13 11 18 18 H 1.48508 * 109.47231 * 329.99091 * 15 13 11 19 19 C 1.35675 * 122.26186 * 179.97438 * 3 2 1 20 20 C 1.42056 * 119.93179 * 0.02562 * 19 3 2 21 21 O 1.21939 * 121.06311 * 179.97438 * 20 19 3 22 22 C 1.47212 * 117.86714 * 0.25407 * 20 19 3 23 23 C 1.39583 * 121.36302 * 180.31005 * 22 20 19 24 24 C 1.36644 * 119.69941 * 179.68756 * 23 22 20 25 25 C 1.38890 * 120.55390 * 359.72670 * 24 23 22 26 26 C 1.37706 * 120.71871 * 0.02562 * 25 24 23 27 27 C 1.37490 * 119.18384 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47593 * 82.22443 * 1 2 3 29 29 H 1.09005 * 109.46785 * 202.22754 * 1 2 3 30 30 H 1.09005 * 109.46850 * 322.22248 * 1 2 3 31 31 H 0.97007 * 120.00518 * 5.09100 * 6 4 3 32 32 H 1.09000 * 109.46833 * 300.00056 * 7 6 4 33 33 H 1.08998 * 109.47020 * 59.99515 * 7 6 4 34 34 H 1.09004 * 109.46397 * 59.99976 * 9 8 7 35 35 H 1.08994 * 109.47117 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46654 * 300.00278 * 9 8 7 37 37 H 1.08992 * 109.47069 * 59.99930 * 10 8 7 38 38 H 1.09004 * 109.47121 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.46984 * 299.99880 * 10 8 7 40 40 H 0.96995 * 120.00450 * 180.02562 * 14 13 11 41 41 H 1.08002 * 120.03136 * 180.02562 * 19 3 2 42 42 H 1.08005 * 120.15045 * 359.39467 * 23 22 20 43 43 H 1.07996 * 119.72438 * 179.75767 * 24 23 22 44 44 H 1.08000 * 119.63408 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.13893 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1304 1.1915 0.0000 4 6 1.3457 2.4497 -0.0006 5 8 0.1385 2.4127 -0.1304 6 7 1.9720 3.6345 0.1430 7 6 1.1894 4.8680 0.2544 8 6 2.1358 6.0604 0.4067 9 6 2.9852 5.8798 1.6664 10 6 3.0502 6.1454 -0.8171 11 6 1.3308 7.3291 0.5220 12 1 0.2520 7.2891 0.4894 13 6 1.9715 8.5413 0.6679 14 7 3.2852 8.5902 0.7070 15 14 0.9736 10.1138 0.8115 16 1 0.6742 10.3814 2.2412 17 1 1.7512 11.2466 0.2481 18 1 -0.2979 9.9637 0.0591 19 6 3.4852 1.2643 0.0005 20 6 4.2591 0.0730 0.0005 21 8 5.4778 0.1144 0.0005 22 6 3.5426 -1.2130 -0.0058 23 6 4.2302 -2.4277 0.0002 24 6 3.5308 -3.6015 0.0005 25 6 2.1419 -3.5958 0.0006 26 6 1.4433 -2.4091 -0.0002 27 6 2.1354 -1.2004 0.0005 28 1 -0.3634 0.1390 -1.0182 29 1 -0.3633 -0.9514 0.3888 30 1 -0.3633 0.8123 0.6296 31 1 2.9409 3.6705 0.1725 32 1 0.5847 4.9969 -0.6432 33 1 0.5377 4.8072 1.1260 34 1 3.5675 4.9621 1.5834 35 1 3.6597 6.7291 1.7747 36 1 2.3338 5.8193 2.5382 37 1 2.4451 6.2740 -1.7145 38 1 3.7247 6.9947 -0.7084 39 1 3.6325 5.2277 -0.9000 40 1 3.7359 9.4429 0.8101 41 1 3.9748 2.2270 0.0009 42 1 5.3102 -2.4397 -0.0001 43 1 4.0623 -4.5416 0.0013 44 1 1.6040 -4.5324 0.0012 45 1 0.3633 -2.4156 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601623801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:34 Heat of formation + Delta-G solvation = -27.144471 kcal Electronic energy + Delta-G solvation = -27792.144150 eV Core-core repulsion = 23967.706784 eV Total energy + Delta-G solvation = -3824.437366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.65061 -40.89363 -39.35219 -38.57324 -37.82924 -35.52138 -34.02391 -32.76339 -31.83943 -31.34844 -27.84182 -27.77258 -27.59213 -27.18910 -25.51962 -24.77699 -22.61936 -22.03690 -20.70171 -19.84179 -19.17491 -18.94505 -17.86647 -17.30733 -17.26127 -16.74883 -16.62534 -16.31646 -16.04271 -15.60541 -15.46025 -15.17153 -15.05632 -14.98371 -14.83753 -14.56231 -14.26154 -14.04403 -13.54181 -13.32675 -13.19951 -13.11534 -12.89316 -12.70469 -12.60425 -12.58493 -12.28342 -12.13967 -12.11787 -11.51506 -11.32330 -11.19767 -10.73484 -10.59502 -10.52679 -10.41051 -10.13792 -10.05325 -8.77060 -8.02120 -6.18477 -0.73766 -0.19492 0.51267 1.17510 1.43721 1.47139 1.54467 1.54873 2.02161 2.07262 2.46685 2.88524 3.04739 3.22221 3.40686 3.48532 3.72130 3.89034 4.16617 4.24803 4.33063 4.35668 4.41508 4.46698 4.48289 4.59769 4.68214 4.74213 4.78714 4.89952 4.97276 4.99634 5.02596 5.06170 5.16865 5.23196 5.37413 5.48712 5.49141 5.56004 5.63615 5.64663 5.67630 5.96037 6.11767 6.18311 6.30655 6.41010 6.67703 6.82086 6.89434 7.49863 8.96974 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002722 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.299910 B =10283.765470 C =11161.902591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.472 5.472 3 C 0.182 3.818 4 C 0.547 3.453 5 O -0.543 6.543 6 N -0.690 5.690 7 C 0.147 3.853 8 C 0.051 3.949 9 C -0.125 4.125 10 C -0.126 4.126 11 C -0.525 4.525 12 H 0.052 0.948 13 C 0.026 3.974 14 N -0.901 5.901 15 Si 0.946 3.054 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.293 4.293 20 C 0.407 3.593 21 O -0.537 6.537 22 C -0.227 4.227 23 C -0.048 4.048 24 C -0.151 4.151 25 C -0.042 4.042 26 C -0.170 4.170 27 C 0.183 3.817 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.409 0.591 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.259 0.741 41 H 0.153 0.847 42 H 0.131 0.869 43 H 0.160 0.840 44 H 0.175 0.825 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 -25.223 -1.087 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.161 5.161 3 C 0.068 3.932 4 C 0.331 3.669 5 O -0.423 6.423 6 N -0.341 5.341 7 C 0.024 3.976 8 C 0.051 3.949 9 C -0.183 4.183 10 C -0.184 4.184 11 C -0.563 4.563 12 H 0.070 0.930 13 C -0.173 4.173 14 N -0.540 5.540 15 Si 0.773 3.227 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.321 4.321 20 C 0.298 3.702 21 O -0.424 6.424 22 C -0.231 4.231 23 C -0.066 4.066 24 C -0.169 4.169 25 C -0.061 4.061 26 C -0.190 4.190 27 C 0.081 3.919 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.118 0.882 31 H 0.248 0.752 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.171 0.829 42 H 0.148 0.852 43 H 0.177 0.823 44 H 0.192 0.808 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.059 -25.046 -1.144 25.577 hybrid contribution 0.343 1.728 0.075 1.764 sum -4.716 -23.317 -1.069 23.813 Atomic orbital electron populations 1.22920 0.74068 1.06378 1.05457 1.43229 1.09267 1.01661 1.61966 1.19734 0.92073 0.86477 0.94926 1.18118 0.86974 0.83646 0.78119 1.90720 1.14127 1.86881 1.50545 1.46135 1.11719 1.05869 1.70399 1.21513 0.93986 0.81776 1.00318 1.18367 0.92490 0.90976 0.93115 1.21725 0.99545 0.99657 0.97401 1.21728 0.99511 1.00055 0.97078 1.21246 0.92865 0.91804 1.50429 0.92961 1.25485 0.95724 1.01322 0.94808 1.69921 1.08006 1.25819 1.50242 0.85741 0.78943 0.79937 0.78067 1.20546 1.21267 1.19710 1.22382 0.91964 1.01708 1.16072 1.18787 0.88458 0.88913 0.74006 1.90674 1.15981 1.89946 1.45771 1.20423 0.92525 0.96562 1.13569 1.20982 1.00772 0.90921 0.93960 1.21284 0.94998 0.98366 1.02280 1.21674 0.93944 0.98654 0.91821 1.21255 1.01839 0.89190 1.06688 1.18269 0.90593 0.85906 0.97132 0.90088 0.86575 0.88220 0.75162 0.92654 0.92487 0.95021 0.91962 0.95664 0.95730 0.91929 0.95025 0.93104 0.82949 0.85156 0.82252 0.80781 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 8.82 127.77 1.13 2.02 16 2 N -0.47 -10.73 3.08 -526.57 -1.62 -12.35 16 3 C 0.18 5.02 6.62 40.51 0.27 5.28 16 4 C 0.55 16.86 7.62 86.92 0.66 17.52 16 5 O -0.54 -17.95 13.02 -3.64 -0.05 -18.00 16 6 N -0.69 -22.62 4.90 -465.58 -2.28 -24.90 16 7 C 0.15 5.68 4.51 86.38 0.39 6.07 16 8 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 9 C -0.13 -5.50 8.08 71.98 0.58 -4.92 16 10 C -0.13 -5.55 8.08 71.98 0.58 -4.96 16 11 C -0.52 -26.61 8.01 25.60 0.21 -26.41 16 12 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 13 C 0.03 1.36 5.15 84.66 0.44 1.80 16 14 N -0.90 -47.86 9.35 21.45 0.20 -47.66 16 15 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 C -0.29 -8.70 9.44 22.62 0.21 -8.49 16 20 C 0.41 13.06 6.97 25.58 0.18 13.24 16 21 O -0.54 -20.47 17.34 -5.12 -0.09 -20.56 16 22 C -0.23 -5.83 5.89 -19.99 -0.12 -5.95 16 23 C -0.05 -0.99 9.61 22.22 0.21 -0.77 16 24 C -0.15 -1.89 9.98 22.05 0.22 -1.67 16 25 C -0.04 -0.39 10.01 22.30 0.22 -0.17 16 26 C -0.17 -2.15 9.21 22.40 0.21 -1.95 16 27 C 0.18 3.86 6.53 39.12 0.26 4.11 16 28 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 29 H 0.12 1.09 5.74 -2.38 -0.01 1.07 16 30 H 0.10 2.16 5.64 -2.38 -0.01 2.15 16 31 H 0.41 12.75 4.09 -92.70 -0.38 12.37 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.03 1.19 6.86 -2.38 -0.02 1.17 16 35 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 36 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 3.10 6.07 -2.38 -0.01 3.09 16 39 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 40 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 41 H 0.15 4.40 6.23 -2.91 -0.02 4.38 16 42 H 0.13 2.79 7.78 -2.91 -0.02 2.77 16 43 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 45 H 0.17 1.07 6.00 -2.91 -0.02 1.06 16 Total: -1.00 -65.02 357.74 4.47 -60.56 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.66 Total: 22.16 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.62 Total: -3.00 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -3.70 Total: -84.92 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.14 Total: -38.56 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -65.02 4.47 -60.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.413 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds