Wall clock time and date at job start Tue Mar 31 2020 15:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47294 * 2 1 4 4 C 1.50706 * 109.46748 * 119.99635 * 2 1 3 5 5 C 1.34175 * 126.11366 * 274.99874 * 4 2 1 6 6 O 1.35018 * 107.25617 * 179.76420 * 5 4 2 7 7 C 1.34195 * 107.74280 * 0.41904 * 6 5 4 8 8 N 1.38642 * 125.70496 * 179.83887 * 7 6 5 9 9 C 1.34780 * 119.99726 * 359.69267 * 8 7 6 10 10 O 1.21279 * 120.00145 * 0.27466 * 9 8 7 11 11 C 1.50704 * 120.00200 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.47342 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47125 * 54.99916 * 12 11 9 14 14 C 1.50701 * 109.47037 * 295.00144 * 12 11 9 15 15 H 1.08001 * 120.00389 * 325.12658 * 14 12 11 16 16 C 1.37879 * 120.00009 * 145.12651 * 14 12 11 17 17 N 1.31519 * 119.99849 * 184.98974 * 16 14 12 18 18 Si 1.86803 * 120.00045 * 4.98752 * 16 14 12 19 19 H 1.48500 * 109.47027 * 84.72923 * 18 16 14 20 20 H 1.48494 * 109.47160 * 204.73253 * 18 16 14 21 21 H 1.48501 * 109.47185 * 324.73030 * 18 16 14 22 22 C 1.50695 * 109.47258 * 175.00080 * 12 11 9 23 23 C 1.38239 * 120.00042 * 64.69223 * 22 12 11 24 24 C 1.38233 * 120.00240 * 179.78937 * 23 22 12 25 25 C 1.38243 * 119.99735 * 0.43896 * 24 23 22 26 26 C 1.38233 * 120.00090 * 359.81364 * 25 24 23 27 27 C 1.38231 * 120.00404 * 244.96542 * 22 12 11 28 28 N 1.30954 * 108.59894 * 359.57501 * 7 6 5 29 29 H 1.09002 * 109.47094 * 300.00435 * 1 2 3 30 30 H 1.08995 * 109.47059 * 59.99992 * 1 2 3 31 31 H 1.08997 * 109.47704 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47330 * 239.99496 * 2 1 3 33 33 H 1.09002 * 109.47405 * 59.99756 * 3 2 1 34 34 H 1.09006 * 109.47528 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46735 * 299.99740 * 3 2 1 36 36 H 1.08006 * 126.37297 * 0.02562 * 5 4 2 37 37 H 0.97005 * 120.00674 * 179.69165 * 8 7 6 38 38 H 1.09006 * 109.47060 * 300.00546 * 11 9 8 39 39 H 1.09003 * 109.46986 * 59.99567 * 11 9 8 40 40 H 0.96998 * 119.99467 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.00049 * 359.97438 * 23 22 12 42 42 H 1.08001 * 120.00259 * 180.27577 * 24 23 22 43 43 H 1.08002 * 119.99509 * 179.83743 * 25 24 23 44 44 H 1.07993 * 119.99808 * 180.02562 * 26 25 24 45 45 H 1.08010 * 119.99855 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 2.2068 -0.1637 2.4434 6 8 2.6634 -1.1374 3.2597 7 6 2.7708 -2.2617 2.5349 8 7 3.2095 -3.4895 3.0064 9 6 3.5791 -3.6233 4.2956 10 8 3.5231 -2.6710 5.0445 11 6 4.0554 -4.9580 4.8083 12 6 4.4095 -4.8377 6.2918 13 1 3.5535 -4.4423 6.8387 14 6 5.5831 -3.9063 6.4542 15 1 6.3616 -3.8830 5.7060 16 6 5.6629 -3.0838 7.5579 17 7 6.6341 -2.2020 7.6520 18 14 4.3915 -3.2219 8.9195 19 1 4.7908 -4.2975 9.8623 20 1 4.3051 -1.9313 9.6489 21 1 3.0679 -3.5467 8.3298 22 6 4.7681 -6.1970 6.8345 23 6 5.8867 -6.8571 6.3612 24 6 6.2181 -8.1021 6.8621 25 6 5.4260 -8.6910 7.8300 26 6 4.3046 -8.0332 8.2996 27 6 3.9756 -6.7863 7.8017 28 7 2.3865 -2.0068 1.3093 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 2.0135 0.8631 2.7170 37 1 3.2504 -4.2522 2.4084 38 1 3.2654 -5.6985 4.6825 39 1 4.9372 -5.2688 4.2479 40 1 6.6904 -1.6236 8.4286 41 1 6.5033 -6.3989 5.6020 42 1 7.0945 -8.6160 6.4955 43 1 5.6835 -9.6649 8.2195 44 1 3.6860 -8.4930 9.0560 45 1 3.0994 -6.2722 8.1687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602394751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:37 Heat of formation + Delta-G solvation = 9.610220 kcal Electronic energy + Delta-G solvation = -27343.644648 eV Core-core repulsion = 23520.801086 eV Total energy + Delta-G solvation = -3822.843563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.11690 -39.57485 -38.51256 -36.37985 -35.02798 -34.20075 -33.27920 -31.76471 -30.28083 -29.48658 -28.37313 -27.30638 -26.11974 -23.67085 -23.06900 -22.14493 -21.82516 -21.21412 -19.62221 -19.08128 -17.78882 -17.08327 -16.82005 -16.58960 -16.28286 -15.88577 -14.98822 -14.71823 -14.62091 -14.30230 -14.19283 -13.97082 -13.59868 -13.42006 -13.05776 -12.80940 -12.67188 -12.45517 -12.39597 -12.19978 -11.98700 -11.66399 -11.49991 -11.40826 -11.14662 -11.02795 -10.85409 -10.58555 -10.47541 -10.37185 -10.20157 -10.00236 -9.71097 -9.47620 -9.16990 -8.52744 -8.29427 -8.03089 -7.90646 -6.05839 -4.04483 1.66685 2.01521 2.05506 2.28937 2.60579 3.31979 3.36243 3.39394 3.40113 3.41848 4.41370 4.45272 4.49793 4.70569 4.96226 5.04860 5.19806 5.22717 5.35208 5.41665 5.44979 5.48407 5.50100 5.60177 5.61985 5.63293 5.76743 5.81032 5.82963 5.95352 6.03433 6.05386 6.07953 6.15254 6.23067 6.27751 6.44087 6.59870 6.65651 6.73775 6.91313 7.07317 7.13210 7.21579 7.48197 7.63659 7.73476 8.07778 8.43187 8.47822 8.92399 9.57666 11.07018 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.003052 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.625374 B = 9172.906683 C =10083.404421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.012 4.012 3 C -0.147 4.147 4 C 0.009 3.991 5 C -0.095 4.095 6 O -0.178 6.178 7 C 0.439 3.561 8 N -0.627 5.627 9 C 0.508 3.492 10 O -0.450 6.450 11 C -0.108 4.108 12 C 0.046 3.954 13 H 0.060 0.940 14 C -0.495 4.495 15 H 0.073 0.927 16 C 0.089 3.911 17 N -0.894 5.894 18 Si 0.869 3.131 19 H -0.275 1.275 20 H -0.290 1.290 21 H -0.261 1.261 22 C -0.041 4.041 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.124 4.124 27 C -0.139 4.139 28 N -0.519 5.519 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.211 0.789 37 H 0.431 0.569 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 -2.611 -12.061 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 C -0.205 4.205 4 C -0.111 4.111 5 C -0.167 4.167 6 O -0.062 6.062 7 C 0.142 3.858 8 N -0.289 5.289 9 C 0.295 3.705 10 O -0.314 6.314 11 C -0.148 4.148 12 C 0.026 3.974 13 H 0.078 0.922 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.114 4.114 17 N -0.531 5.531 18 Si 0.698 3.302 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.187 1.187 22 C -0.042 4.042 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.166 4.166 26 C -0.142 4.142 27 C -0.158 4.158 28 N -0.258 5.258 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.227 0.773 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.610 -2.207 -11.668 15.276 hybrid contribution -0.381 0.192 1.197 1.271 sum -9.990 -2.015 -10.470 14.612 Atomic orbital electron populations 1.21822 0.93964 1.02279 1.01872 1.19412 0.95558 0.94639 0.93468 1.21884 1.01634 0.94796 1.02179 1.21402 1.03706 0.89734 0.96232 1.24522 1.08121 0.94328 0.89681 1.84738 1.65218 1.17172 1.39117 1.21667 0.96244 0.83659 0.84185 1.43242 1.65755 1.06331 1.13565 1.21501 0.76690 0.93004 0.79329 1.90863 1.46403 1.39991 1.54175 1.21691 1.01412 0.91075 1.00652 1.18323 0.99374 0.90060 0.89610 0.92226 1.20607 1.05701 1.18725 1.08151 0.90883 1.24870 0.94834 0.93965 0.97757 1.69880 1.32521 1.21108 1.29554 0.86979 0.83258 0.77430 0.82562 1.20049 1.21671 1.18651 1.20704 0.93485 0.95238 0.94765 1.20981 0.96676 0.93799 1.00462 1.21075 0.99247 0.96186 0.97857 1.20886 0.96537 0.99871 0.99314 1.20968 0.97607 0.95606 1.00019 1.21080 1.00179 0.95460 0.99035 1.70600 1.22966 1.16316 1.15885 0.92535 0.92068 0.92339 0.89525 0.92362 0.92148 0.91803 0.77260 0.72864 0.90192 0.88746 0.92690 0.86097 0.87072 0.87327 0.87265 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.18 37.16 0.34 -0.89 16 2 C -0.01 -0.12 3.37 -91.77 -0.31 -0.43 16 3 C -0.15 -1.20 8.77 37.15 0.33 -0.87 16 4 C 0.01 0.13 6.03 -82.79 -0.50 -0.37 16 5 C -0.09 -1.38 11.32 29.30 0.33 -1.05 16 6 O -0.18 -3.40 9.09 -17.86 -0.16 -3.56 16 7 C 0.44 7.68 8.88 -86.61 -0.77 6.92 16 8 N -0.63 -9.83 5.39 -13.06 -0.07 -9.90 16 9 C 0.51 9.71 7.54 -10.98 -0.08 9.63 16 10 O -0.45 -10.95 13.75 -16.30 -0.22 -11.17 16 11 C -0.11 -1.85 4.96 -27.88 -0.14 -1.99 16 12 C 0.05 0.99 1.21 -92.93 -0.11 0.88 16 13 H 0.06 1.41 4.70 -51.93 -0.24 1.16 16 14 C -0.50 -13.17 6.87 -34.44 -0.24 -13.41 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 17 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 18 Si 0.87 22.32 27.15 -169.99 -4.62 17.71 16 19 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.26 -6.44 6.06 56.52 0.34 -6.10 16 22 C -0.04 -0.82 4.55 -104.63 -0.48 -1.30 16 23 C -0.10 -1.86 8.87 -39.58 -0.35 -2.21 16 24 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 25 C -0.15 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 27 C -0.14 -2.61 9.43 -39.58 -0.37 -2.98 16 28 N -0.52 -8.32 11.33 -10.57 -0.12 -8.44 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.43 7.28 -51.93 -0.38 0.05 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.21 2.26 7.37 -52.48 -0.39 1.88 16 37 H 0.43 4.95 8.82 -40.82 -0.36 4.59 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.46 7.86 -51.93 -0.41 1.05 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 41 H 0.12 2.18 7.80 -52.48 -0.41 1.77 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.98 7.95 -52.48 -0.42 1.57 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -34.89 376.85 -8.83 -43.72 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.45 Total: 5.92 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.64 Total: -13.16 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.58 Total: -45.14 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.39 Total: -14.73 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.62 Total: 17.71 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.89 -8.83 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602394751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.330 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds