Wall clock time and date at job start Tue Mar 31 2020 15:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47294 * 2 1 4 4 C 1.50706 * 109.46748 * 119.99635 * 2 1 3 5 5 C 1.34175 * 126.11366 * 274.99874 * 4 2 1 6 6 O 1.35018 * 107.25617 * 179.76420 * 5 4 2 7 7 C 1.34195 * 107.74280 * 0.41904 * 6 5 4 8 8 N 1.38642 * 125.70496 * 179.83887 * 7 6 5 9 9 C 1.34780 * 119.99726 * 359.69267 * 8 7 6 10 10 O 1.21279 * 120.00145 * 0.27466 * 9 8 7 11 11 C 1.50704 * 120.00200 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.47342 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47125 * 54.99916 * 12 11 9 14 14 C 1.50701 * 109.47037 * 295.00144 * 12 11 9 15 15 H 1.08001 * 120.00389 * 325.12658 * 14 12 11 16 16 C 1.37879 * 120.00009 * 145.12651 * 14 12 11 17 17 N 1.31519 * 119.99849 * 184.98974 * 16 14 12 18 18 Si 1.86803 * 120.00045 * 4.98752 * 16 14 12 19 19 H 1.48500 * 109.47027 * 84.72923 * 18 16 14 20 20 H 1.48494 * 109.47160 * 204.73253 * 18 16 14 21 21 H 1.48501 * 109.47185 * 324.73030 * 18 16 14 22 22 C 1.50695 * 109.47258 * 175.00080 * 12 11 9 23 23 C 1.38239 * 120.00042 * 64.69223 * 22 12 11 24 24 C 1.38233 * 120.00240 * 179.78937 * 23 22 12 25 25 C 1.38243 * 119.99735 * 0.43896 * 24 23 22 26 26 C 1.38233 * 120.00090 * 359.81364 * 25 24 23 27 27 C 1.38231 * 120.00404 * 244.96542 * 22 12 11 28 28 N 1.30954 * 108.59894 * 359.57501 * 7 6 5 29 29 H 1.09002 * 109.47094 * 300.00435 * 1 2 3 30 30 H 1.08995 * 109.47059 * 59.99992 * 1 2 3 31 31 H 1.08997 * 109.47704 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47330 * 239.99496 * 2 1 3 33 33 H 1.09002 * 109.47405 * 59.99756 * 3 2 1 34 34 H 1.09006 * 109.47528 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46735 * 299.99740 * 3 2 1 36 36 H 1.08006 * 126.37297 * 0.02562 * 5 4 2 37 37 H 0.97005 * 120.00674 * 179.69165 * 8 7 6 38 38 H 1.09006 * 109.47060 * 300.00546 * 11 9 8 39 39 H 1.09003 * 109.46986 * 59.99567 * 11 9 8 40 40 H 0.96998 * 119.99467 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.00049 * 359.97438 * 23 22 12 42 42 H 1.08001 * 120.00259 * 180.27577 * 24 23 22 43 43 H 1.08002 * 119.99509 * 179.83743 * 25 24 23 44 44 H 1.07993 * 119.99808 * 180.02562 * 26 25 24 45 45 H 1.08010 * 119.99855 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 2.2068 -0.1637 2.4434 6 8 2.6634 -1.1374 3.2597 7 6 2.7708 -2.2617 2.5349 8 7 3.2095 -3.4895 3.0064 9 6 3.5791 -3.6233 4.2956 10 8 3.5231 -2.6710 5.0445 11 6 4.0554 -4.9580 4.8083 12 6 4.4095 -4.8377 6.2918 13 1 3.5535 -4.4423 6.8387 14 6 5.5831 -3.9063 6.4542 15 1 6.3616 -3.8830 5.7060 16 6 5.6629 -3.0838 7.5579 17 7 6.6341 -2.2020 7.6520 18 14 4.3915 -3.2219 8.9195 19 1 4.7908 -4.2975 9.8623 20 1 4.3051 -1.9313 9.6489 21 1 3.0679 -3.5467 8.3298 22 6 4.7681 -6.1970 6.8345 23 6 5.8867 -6.8571 6.3612 24 6 6.2181 -8.1021 6.8621 25 6 5.4260 -8.6910 7.8300 26 6 4.3046 -8.0332 8.2996 27 6 3.9756 -6.7863 7.8017 28 7 2.3865 -2.0068 1.3093 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 2.0135 0.8631 2.7170 37 1 3.2504 -4.2522 2.4084 38 1 3.2654 -5.6985 4.6825 39 1 4.9372 -5.2688 4.2479 40 1 6.6904 -1.6236 8.4286 41 1 6.5033 -6.3989 5.6020 42 1 7.0945 -8.6160 6.4955 43 1 5.6835 -9.6649 8.2195 44 1 3.6860 -8.4930 9.0560 45 1 3.0994 -6.2722 8.1687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602394751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:36 Heat of formation + Delta-G solvation = -13.516759 kcal Electronic energy + Delta-G solvation = -27344.647509 eV Core-core repulsion = 23520.801086 eV Total energy + Delta-G solvation = -3823.846424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.37992 -41.08894 -39.89260 -37.34894 -36.47467 -35.85813 -34.45570 -33.76253 -31.60091 -30.82209 -29.61075 -28.09832 -27.79244 -24.94687 -24.47670 -23.47631 -23.16184 -22.45503 -21.08872 -20.37670 -19.10365 -19.05342 -18.21510 -17.94325 -17.47321 -17.21200 -16.51092 -16.20968 -15.90247 -15.73461 -15.46719 -15.10169 -15.01484 -14.69236 -14.48824 -14.18425 -13.95555 -13.91539 -13.77229 -13.38389 -13.07304 -13.01532 -12.79910 -12.65075 -12.39599 -12.18066 -12.10240 -11.96860 -11.88960 -11.86878 -11.53924 -11.53077 -11.39417 -11.10475 -11.04632 -10.64435 -9.62261 -9.32369 -9.26202 -8.25339 -6.22700 0.37726 0.67737 0.71774 1.04988 1.28538 1.31676 1.33621 1.36385 1.92961 2.15344 2.36462 3.06582 3.18973 3.37170 3.81169 3.85914 4.08603 4.16777 4.24856 4.27461 4.31947 4.33319 4.41131 4.44217 4.48267 4.59259 4.76085 4.82082 4.82497 4.85785 4.93025 5.00209 5.02514 5.10777 5.16524 5.19857 5.32517 5.35684 5.39702 5.40656 5.43948 5.65283 5.77262 5.81742 5.94490 6.00792 6.30916 6.35522 6.77698 6.80749 7.05381 7.41591 8.91755 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.003052 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.625374 B = 9172.906683 C =10083.404421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.006 3.994 5 C -0.103 4.103 6 O -0.214 6.214 7 C 0.410 3.590 8 N -0.609 5.609 9 C 0.511 3.489 10 O -0.512 6.512 11 C -0.102 4.102 12 C 0.047 3.953 13 H 0.040 0.960 14 C -0.470 4.470 15 H 0.039 0.961 16 C 0.027 3.973 17 N -0.951 5.951 18 Si 0.917 3.083 19 H -0.264 1.264 20 H -0.301 1.301 21 H -0.249 1.249 22 C -0.064 4.064 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.124 4.124 27 C -0.155 4.155 28 N -0.516 5.516 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.241 0.759 37 H 0.450 0.550 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.227 -4.908 -13.035 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 C -0.202 4.202 4 C -0.113 4.113 5 C -0.173 4.173 6 O -0.099 6.099 7 C 0.114 3.886 8 N -0.272 5.272 9 C 0.299 3.701 10 O -0.382 6.382 11 C -0.142 4.142 12 C 0.027 3.973 13 H 0.059 0.941 14 C -0.508 4.508 15 H 0.057 0.943 16 C -0.170 4.170 17 N -0.592 5.592 18 Si 0.744 3.256 19 H -0.189 1.189 20 H -0.228 1.228 21 H -0.174 1.174 22 C -0.064 4.064 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.157 4.157 26 C -0.142 4.142 27 C -0.174 4.174 28 N -0.256 5.256 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.257 0.743 37 H 0.294 0.706 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.132 0.868 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.164 -4.566 -12.702 17.516 hybrid contribution 0.076 0.815 1.325 1.558 sum -11.088 -3.751 -11.377 16.323 Atomic orbital electron populations 1.21803 0.92610 1.01858 1.03237 1.19599 0.96558 0.95377 0.91423 1.21887 1.01014 0.93545 1.03762 1.22106 1.02743 0.88994 0.97502 1.25264 1.07458 0.94939 0.89641 1.84721 1.65882 1.18403 1.40910 1.22009 0.97933 0.83965 0.84673 1.42887 1.64699 1.06698 1.12887 1.21834 0.75605 0.92893 0.79767 1.90843 1.49384 1.41877 1.56056 1.21662 1.03658 0.91102 0.97791 1.18182 0.96285 0.90343 0.92449 0.94140 1.20863 1.05676 1.18402 1.05865 0.94250 1.25582 0.96590 0.94408 1.00390 1.70029 1.35251 1.23378 1.30519 0.86199 0.81987 0.77010 0.80373 1.18866 1.22794 1.17358 1.20415 0.95038 0.94733 0.96231 1.21046 0.96367 0.95042 1.01038 1.21415 1.00101 0.95175 0.97504 1.21351 0.95382 1.01005 0.97996 1.21334 0.98153 0.94587 1.00112 1.21216 1.00397 0.96786 0.98970 1.70627 1.22380 1.17531 1.15020 0.92319 0.89574 0.93648 0.89549 0.91557 0.93146 0.89501 0.74254 0.70594 0.85777 0.86883 0.93267 0.86777 0.84255 0.83672 0.84291 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.18 71.98 0.66 -1.44 16 2 C -0.01 -0.19 3.37 -11.54 -0.04 -0.23 16 3 C -0.14 -2.04 8.77 71.98 0.63 -1.41 16 4 C 0.01 0.18 6.03 41.20 0.25 0.42 16 5 C -0.10 -3.00 11.32 66.89 0.76 -2.25 16 6 O -0.21 -8.43 9.09 12.28 0.11 -8.32 16 7 C 0.41 14.61 8.88 178.95 1.59 16.20 16 8 N -0.61 -19.17 5.39 -423.80 -2.28 -21.46 16 9 C 0.51 19.87 7.54 87.66 0.66 20.53 16 10 O -0.51 -26.04 13.75 17.87 0.25 -25.79 16 11 C -0.10 -3.45 4.96 29.85 0.15 -3.31 16 12 C 0.05 2.05 1.21 -12.29 -0.01 2.03 16 13 H 0.04 1.93 4.70 -2.39 -0.01 1.92 16 14 C -0.47 -26.00 6.87 25.60 0.18 -25.83 16 15 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 16 C 0.03 1.63 5.47 84.65 0.46 2.09 16 17 N -0.95 -61.87 13.96 21.45 0.30 -61.57 16 18 Si 0.92 47.50 27.15 68.60 1.86 49.36 16 19 H -0.26 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 21 H -0.25 -12.23 6.06 99.48 0.60 -11.63 16 22 C -0.06 -2.47 4.55 -19.87 -0.09 -2.56 16 23 C -0.12 -4.13 8.87 22.27 0.20 -3.93 16 24 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 25 C -0.14 -3.71 10.05 22.27 0.22 -3.48 16 26 C -0.12 -3.60 10.05 22.27 0.22 -3.37 16 27 C -0.16 -5.50 9.43 22.27 0.21 -5.29 16 28 N -0.52 -16.47 11.33 -301.68 -3.42 -19.89 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 0.83 7.28 -2.39 -0.02 0.81 16 34 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.24 4.99 7.37 -2.91 -0.02 4.97 16 37 H 0.45 9.95 8.82 -92.70 -0.82 9.13 16 38 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 39 H 0.11 3.40 7.86 -2.39 -0.02 3.38 16 40 H 0.26 16.11 8.31 -92.71 -0.77 15.33 16 41 H 0.11 4.08 7.80 -2.91 -0.02 4.06 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 44 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 45 H 0.11 3.77 7.95 -2.91 -0.02 3.74 16 Total: -1.00 -81.39 376.85 3.17 -78.22 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.08 Total: 24.64 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 6.27 Total: -15.19 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -5.40 Total: -102.92 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: 0.36 Total: -34.11 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.86 Total: 49.36 kcal Total: -81.39 3.17 -78.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602394751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.700 kcal (2) G-P(sol) polarization free energy of solvation -81.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds