Wall clock time and date at job start Tue Mar 31 2020 16:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99732 * 2 1 4 4 C 1.52998 * 109.47137 * 124.99808 * 3 2 1 5 5 H 1.08994 * 109.46974 * 304.99627 * 4 3 2 6 6 C 1.53003 * 109.47106 * 65.00052 * 4 3 2 7 7 O 1.42906 * 109.46876 * 185.97889 * 6 4 3 8 8 C 1.53007 * 109.46793 * 185.00011 * 4 3 2 9 9 N 1.46505 * 109.46881 * 173.31041 * 8 4 3 10 10 C 1.34774 * 119.99956 * 180.50467 * 9 8 4 11 11 O 1.21676 * 119.99958 * 354.78705 * 10 9 8 12 12 C 1.46884 * 119.99970 * 174.78371 * 10 9 8 13 13 C 1.36126 * 125.43655 * 186.12393 * 12 10 9 14 14 C 1.41695 * 107.74805 * 179.88510 * 13 12 10 15 15 C 1.40021 * 133.35017 * 180.15295 * 14 13 12 16 16 C 1.36581 * 119.82972 * 180.26545 * 15 14 13 17 17 C 1.38853 * 120.60331 * 0.02562 * 16 15 14 18 18 C 1.37847 * 120.63238 * 359.97438 * 17 16 15 19 19 C 1.39097 * 119.81215 * 0.02562 * 18 17 16 20 20 N 1.37835 * 133.16348 * 180.02562 * 19 18 17 21 21 C 1.36892 * 125.61667 * 359.97438 * 20 19 18 22 22 H 1.07993 * 120.00207 * 224.12461 * 21 20 19 23 23 C 1.39014 * 120.00181 * 44.13566 * 21 20 19 24 24 N 1.31351 * 119.99860 * 7.17780 * 23 21 20 25 25 Si 1.86798 * 120.00211 * 187.18668 * 23 21 20 26 26 H 1.48498 * 109.47179 * 95.01802 * 25 23 21 27 27 H 1.48496 * 109.47019 * 215.02153 * 25 23 21 28 28 H 1.48502 * 109.46950 * 335.02309 * 25 23 21 29 29 H 1.07992 * 120.00376 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99647 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00462 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.46837 * 244.99833 * 3 2 1 33 33 H 1.08997 * 109.46945 * 4.99552 * 3 2 1 34 34 H 1.08999 * 109.47139 * 305.97757 * 6 4 3 35 35 H 1.09000 * 109.46953 * 65.98129 * 6 4 3 36 36 H 0.96693 * 114.00008 * 179.97438 * 7 6 4 37 37 H 1.09000 * 109.47265 * 293.30573 * 8 4 3 38 38 H 1.08992 * 109.46974 * 53.31123 * 8 4 3 39 39 H 0.96995 * 119.99911 * 0.49925 * 9 8 4 40 40 H 1.08000 * 126.12547 * 359.97438 * 13 12 10 41 41 H 1.07994 * 120.08659 * 0.24643 * 15 14 13 42 42 H 1.08002 * 119.69836 * 180.02562 * 16 15 14 43 43 H 1.07996 * 119.68962 * 179.97438 * 17 16 15 44 44 H 1.08004 * 120.09514 * 180.02562 * 18 17 16 45 45 H 0.97005 * 120.00087 * 184.99903 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 1 2.4881 1.1471 2.1060 6 6 4.0998 0.2511 0.9921 7 8 4.9231 0.1836 2.1583 8 6 3.7090 2.7048 1.2552 9 7 4.5164 2.7874 2.4749 10 6 5.1976 3.9155 2.7570 11 8 5.2193 4.8299 1.9545 12 6 5.9138 4.0413 4.0333 13 6 6.5349 5.1663 4.4822 14 6 7.0991 4.8722 5.7483 15 6 7.8375 5.6246 6.6698 16 6 8.2594 5.0488 7.8342 17 6 7.9633 3.7215 8.1143 18 6 7.2378 2.9605 7.2228 19 6 6.7973 3.5248 6.0302 20 7 6.0709 3.0341 4.9666 21 6 5.5844 1.7596 4.8538 22 1 5.6802 1.2257 3.9200 23 6 4.9667 1.1526 5.9412 24 7 4.7232 1.8463 7.0296 25 14 4.4834 -0.6497 5.8547 26 1 5.5588 -1.4800 6.4540 27 1 3.2194 -0.8598 6.6052 28 1 4.2878 -1.0422 4.4358 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 2.6212 1.4026 -0.9314 33 1 1.3584 2.1316 0.0895 34 1 3.6149 -0.7121 0.8335 35 1 4.7155 0.4949 0.1263 36 1 5.6217 -0.4831 2.1085 37 1 4.3507 2.8415 0.3848 38 1 2.9468 3.4838 1.2706 39 1 4.5605 2.0301 3.0794 40 1 6.5869 6.1138 3.9665 41 1 8.0732 6.6575 6.4602 42 1 8.8285 5.6313 8.5437 43 1 8.3046 3.2810 9.0394 44 1 7.0121 1.9289 7.4496 45 1 4.3590 1.4065 7.8138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611407350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:18 Heat of formation + Delta-G solvation = -14.157132 kcal Electronic energy + Delta-G solvation = -28481.462741 eV Core-core repulsion = 24657.588549 eV Total energy + Delta-G solvation = -3823.874192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.38972 -38.80073 -37.56483 -35.83867 -35.47361 -34.05514 -33.42385 -31.40483 -30.58952 -28.92910 -28.04496 -25.92705 -25.67767 -24.90716 -22.57994 -20.90911 -20.76303 -20.03168 -19.66065 -18.96663 -18.02230 -17.36798 -16.25645 -16.02415 -15.49921 -15.23426 -15.05091 -14.75878 -14.44540 -14.37020 -14.11420 -13.51501 -13.30465 -13.14586 -12.93280 -12.88527 -12.74765 -12.36485 -12.21468 -11.85521 -11.81551 -11.62104 -11.56879 -11.32343 -11.05894 -10.90209 -10.68540 -10.61307 -10.51980 -10.07423 -9.79539 -9.69526 -9.55332 -9.22732 -9.16451 -8.55329 -8.28953 -7.12764 -6.76248 -6.44928 -4.58170 1.93585 2.10127 2.82282 2.98567 3.03023 3.08210 3.25894 3.79272 3.92564 4.27631 4.36565 4.63744 4.67149 4.75455 4.84573 5.03785 5.14650 5.16580 5.25820 5.43287 5.48516 5.61060 5.70732 5.75934 5.81081 5.88536 5.98649 6.02821 6.11322 6.24888 6.30762 6.44496 6.51498 6.59166 6.65697 6.78431 6.98506 7.05428 7.18452 7.20439 7.26284 7.57746 7.66008 7.73772 7.78365 8.02176 8.06258 8.42877 8.51042 8.81875 9.15572 9.37774 10.23900 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.004367 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.190989 B = 6410.423924 C = 7877.504259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.084 4.084 4 C -0.098 4.098 5 H 0.088 0.912 6 C 0.080 3.920 7 O -0.558 6.558 8 C 0.128 3.872 9 N -0.717 5.717 10 C 0.591 3.409 11 O -0.568 6.568 12 C -0.016 4.016 13 C -0.169 4.169 14 C -0.134 4.134 15 C -0.087 4.087 16 C -0.161 4.161 17 C -0.150 4.150 18 C -0.052 4.052 19 C 0.104 3.896 20 N -0.259 5.259 21 C -0.372 4.372 22 H 0.128 0.872 23 C 0.057 3.943 24 N -0.824 5.824 25 Si 0.921 3.079 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.246 1.246 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.378 0.622 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.428 0.572 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 -6.700 -8.176 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.122 4.122 4 C -0.117 4.117 5 H 0.106 0.894 6 C 0.002 3.998 7 O -0.364 6.364 8 C 0.003 3.997 9 N -0.380 5.380 10 C 0.380 3.620 11 O -0.449 6.449 12 C -0.131 4.131 13 C -0.197 4.197 14 C -0.139 4.139 15 C -0.106 4.106 16 C -0.181 4.181 17 C -0.170 4.170 18 C -0.072 4.072 19 C -0.011 4.011 20 N 0.077 4.923 21 C -0.499 4.499 22 H 0.145 0.855 23 C -0.156 4.156 24 N -0.453 5.453 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.206 1.206 28 H -0.169 1.169 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.226 0.774 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.277 0.723 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.954 -5.999 -8.436 11.081 hybrid contribution -0.077 -1.659 0.343 1.696 sum -4.031 -7.658 -8.093 11.848 Atomic orbital electron populations 1.23860 0.95964 1.01851 1.01455 1.22974 0.96049 0.98451 0.99607 1.20670 0.97692 0.95901 0.97917 1.21393 0.95678 0.94679 0.99978 0.89412 1.22245 0.92029 0.97477 0.88077 1.86521 1.48067 1.62281 1.39528 1.21186 0.94292 0.95304 0.88919 1.46790 1.48060 1.18287 1.24822 1.17308 0.78029 0.82009 0.84658 1.90693 1.64567 1.40777 1.48813 1.20160 1.08745 0.90171 0.94064 1.20365 1.06023 0.97304 0.96029 1.18035 1.05145 0.94488 0.96200 1.20045 0.98721 0.97996 0.93846 1.20250 1.04539 0.95539 0.97736 1.20560 1.02891 0.94535 0.99043 1.20079 0.96062 0.99659 0.91368 1.18246 0.97395 0.93099 0.92368 1.40013 1.32797 1.07544 1.11936 1.20006 1.38737 0.89110 1.02088 0.85502 1.25709 0.93788 1.00772 0.95364 1.69972 1.36031 1.36316 1.02980 0.85976 0.78359 0.80918 0.80319 1.19854 1.20591 1.16865 0.88497 0.88620 0.87326 0.90444 0.90456 0.93716 0.93731 0.77450 0.92184 0.92188 0.72275 0.85159 0.87869 0.88039 0.87814 0.86799 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 14.32 29.02 0.42 -1.31 16 2 C -0.15 -1.43 9.03 -36.02 -0.33 -1.75 16 3 C -0.08 -0.83 5.13 -27.88 -0.14 -0.98 16 4 C -0.10 -1.26 2.25 -90.62 -0.20 -1.47 16 5 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 6 C 0.08 0.93 6.32 37.16 0.23 1.17 16 7 O -0.56 -7.92 9.15 -35.23 -0.32 -8.24 16 8 C 0.13 2.06 5.06 -4.04 -0.02 2.04 16 9 N -0.72 -14.63 4.97 -61.55 -0.31 -14.94 16 10 C 0.59 14.04 7.76 -12.76 -0.10 13.94 16 11 O -0.57 -14.17 16.86 5.21 0.09 -14.08 16 12 C -0.02 -0.41 6.77 -82.25 -0.56 -0.97 16 13 C -0.17 -4.15 10.55 -39.02 -0.41 -4.56 16 14 C -0.13 -3.27 6.16 -106.89 -0.66 -3.92 16 15 C -0.09 -1.85 10.06 -39.51 -0.40 -2.25 16 16 C -0.16 -3.21 9.97 -39.95 -0.40 -3.61 16 17 C -0.15 -3.12 10.02 -39.50 -0.40 -3.52 16 18 C -0.05 -1.24 8.54 -39.41 -0.34 -1.57 16 19 C 0.10 2.66 6.03 -83.83 -0.51 2.16 16 20 N -0.26 -6.65 2.81 -56.08 -0.16 -6.81 16 21 C -0.37 -8.99 7.77 -15.00 -0.12 -9.11 16 22 H 0.13 2.85 4.48 -52.49 -0.24 2.61 16 23 C 0.06 1.34 4.80 -17.47 -0.08 1.26 16 24 N -0.82 -20.88 10.65 55.50 0.59 -20.29 16 25 Si 0.92 17.71 29.56 -169.99 -5.03 12.69 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.25 -4.36 6.87 56.52 0.39 -3.97 16 29 H 0.10 0.82 7.84 -52.49 -0.41 0.40 16 30 H 0.10 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.11 0.93 6.84 -52.49 -0.36 0.57 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 34 H 0.04 0.44 6.51 -51.93 -0.34 0.10 16 35 H 0.04 0.48 8.13 -51.93 -0.42 0.05 16 36 H 0.38 3.91 9.12 45.56 0.42 4.33 16 37 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.43 8.88 2.67 -40.82 -0.11 8.77 16 40 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 41 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 42 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.11 2.75 6.65 -52.48 -0.35 2.40 16 45 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -30.70 366.82 -8.77 -39.48 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -5.17 Total: 21.13 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.00 Total: -14.45 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.13 Total: -42.04 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.23 Total: -22.33 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.70 -8.77 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611407350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.318 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds