Wall clock time and date at job start Tue Mar 31 2020 16:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99732 * 2 1 4 4 C 1.52998 * 109.47137 * 124.99808 * 3 2 1 5 5 H 1.08994 * 109.46974 * 304.99627 * 4 3 2 6 6 C 1.53003 * 109.47106 * 65.00052 * 4 3 2 7 7 O 1.42906 * 109.46876 * 185.97889 * 6 4 3 8 8 C 1.53007 * 109.46793 * 185.00011 * 4 3 2 9 9 N 1.46505 * 109.46881 * 173.31041 * 8 4 3 10 10 C 1.34774 * 119.99956 * 180.50467 * 9 8 4 11 11 O 1.21676 * 119.99958 * 354.78705 * 10 9 8 12 12 C 1.46884 * 119.99970 * 174.78371 * 10 9 8 13 13 C 1.36126 * 125.43655 * 186.12393 * 12 10 9 14 14 C 1.41695 * 107.74805 * 179.88510 * 13 12 10 15 15 C 1.40021 * 133.35017 * 180.15295 * 14 13 12 16 16 C 1.36581 * 119.82972 * 180.26545 * 15 14 13 17 17 C 1.38853 * 120.60331 * 0.02562 * 16 15 14 18 18 C 1.37847 * 120.63238 * 359.97438 * 17 16 15 19 19 C 1.39097 * 119.81215 * 0.02562 * 18 17 16 20 20 N 1.37835 * 133.16348 * 180.02562 * 19 18 17 21 21 C 1.36892 * 125.61667 * 359.97438 * 20 19 18 22 22 H 1.07993 * 120.00207 * 224.12461 * 21 20 19 23 23 C 1.39014 * 120.00181 * 44.13566 * 21 20 19 24 24 N 1.31351 * 119.99860 * 7.17780 * 23 21 20 25 25 Si 1.86798 * 120.00211 * 187.18668 * 23 21 20 26 26 H 1.48498 * 109.47179 * 95.01802 * 25 23 21 27 27 H 1.48496 * 109.47019 * 215.02153 * 25 23 21 28 28 H 1.48502 * 109.46950 * 335.02309 * 25 23 21 29 29 H 1.07992 * 120.00376 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99647 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00462 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.46837 * 244.99833 * 3 2 1 33 33 H 1.08997 * 109.46945 * 4.99552 * 3 2 1 34 34 H 1.08999 * 109.47139 * 305.97757 * 6 4 3 35 35 H 1.09000 * 109.46953 * 65.98129 * 6 4 3 36 36 H 0.96693 * 114.00008 * 179.97438 * 7 6 4 37 37 H 1.09000 * 109.47265 * 293.30573 * 8 4 3 38 38 H 1.08992 * 109.46974 * 53.31123 * 8 4 3 39 39 H 0.96995 * 119.99911 * 0.49925 * 9 8 4 40 40 H 1.08000 * 126.12547 * 359.97438 * 13 12 10 41 41 H 1.07994 * 120.08659 * 0.24643 * 15 14 13 42 42 H 1.08002 * 119.69836 * 180.02562 * 16 15 14 43 43 H 1.07996 * 119.68962 * 179.97438 * 17 16 15 44 44 H 1.08004 * 120.09514 * 180.02562 * 18 17 16 45 45 H 0.97005 * 120.00087 * 184.99903 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 1 2.4881 1.1471 2.1060 6 6 4.0998 0.2511 0.9921 7 8 4.9231 0.1836 2.1583 8 6 3.7090 2.7048 1.2552 9 7 4.5164 2.7874 2.4749 10 6 5.1976 3.9155 2.7570 11 8 5.2193 4.8299 1.9545 12 6 5.9138 4.0413 4.0333 13 6 6.5349 5.1663 4.4822 14 6 7.0991 4.8722 5.7483 15 6 7.8375 5.6246 6.6698 16 6 8.2594 5.0488 7.8342 17 6 7.9633 3.7215 8.1143 18 6 7.2378 2.9605 7.2228 19 6 6.7973 3.5248 6.0302 20 7 6.0709 3.0341 4.9666 21 6 5.5844 1.7596 4.8538 22 1 5.6802 1.2257 3.9200 23 6 4.9667 1.1526 5.9412 24 7 4.7232 1.8463 7.0296 25 14 4.4834 -0.6497 5.8547 26 1 5.5588 -1.4800 6.4540 27 1 3.2194 -0.8598 6.6052 28 1 4.2878 -1.0422 4.4358 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 2.6212 1.4026 -0.9314 33 1 1.3584 2.1316 0.0895 34 1 3.6149 -0.7121 0.8335 35 1 4.7155 0.4949 0.1263 36 1 5.6217 -0.4831 2.1085 37 1 4.3507 2.8415 0.3848 38 1 2.9468 3.4838 1.2706 39 1 4.5605 2.0301 3.0794 40 1 6.5869 6.1138 3.9665 41 1 8.0732 6.6575 6.4602 42 1 8.8285 5.6313 8.5437 43 1 8.3046 3.2810 9.0394 44 1 7.0121 1.9289 7.4496 45 1 4.3590 1.4065 7.8138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611407350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:17 Heat of formation + Delta-G solvation = -32.585747 kcal Electronic energy + Delta-G solvation = -28482.261866 eV Core-core repulsion = 24657.588549 eV Total energy + Delta-G solvation = -3824.673317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17919 -40.33578 -38.83705 -37.56225 -36.41641 -35.58561 -35.07384 -32.61717 -32.31516 -30.63462 -29.76537 -27.13967 -26.74689 -26.64696 -24.18880 -22.67729 -21.93930 -21.67132 -20.89193 -20.32527 -19.74514 -18.45577 -17.88131 -17.39238 -17.12899 -16.68445 -16.42516 -16.20844 -15.94235 -15.72140 -15.48542 -14.97133 -14.85740 -14.67882 -14.58860 -14.17926 -14.04541 -13.67269 -13.59751 -13.51672 -13.31138 -13.02189 -12.85068 -12.63344 -12.50677 -12.30456 -12.06020 -11.84177 -11.76050 -11.55955 -11.42952 -11.10122 -10.94899 -10.72100 -10.35289 -10.21396 -9.93736 -8.91827 -8.57149 -8.23531 -6.43968 0.14769 1.13267 1.40513 1.40967 1.41879 1.48124 1.60124 2.16756 2.40208 2.54196 2.86521 2.99006 3.32917 3.38870 3.67287 3.87217 4.17199 4.24586 4.28316 4.28866 4.32423 4.44357 4.50731 4.57185 4.60847 4.65183 4.73171 4.77643 4.84648 4.90256 4.99615 5.04165 5.13162 5.22561 5.24684 5.27652 5.38820 5.47898 5.62975 5.76849 5.83659 5.90026 5.94492 5.99838 6.23595 6.33847 6.63190 6.72869 6.95129 7.04558 7.39862 7.55552 8.46291 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.004367 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.190989 B = 6410.423924 C = 7877.504259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.091 4.091 5 H 0.069 0.931 6 C 0.078 3.922 7 O -0.588 6.588 8 C 0.121 3.879 9 N -0.708 5.708 10 C 0.583 3.417 11 O -0.591 6.591 12 C -0.047 4.047 13 C -0.184 4.184 14 C -0.156 4.156 15 C -0.093 4.093 16 C -0.153 4.153 17 C -0.139 4.139 18 C -0.080 4.080 19 C 0.073 3.927 20 N -0.271 5.271 21 C -0.388 4.388 22 H 0.140 0.860 23 C 0.018 3.982 24 N -0.861 5.861 25 Si 0.985 3.015 26 H -0.270 1.270 27 H -0.288 1.288 28 H -0.220 1.220 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.427 0.573 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 -7.998 -8.256 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.180 4.180 3 C -0.115 4.115 4 C -0.110 4.110 5 H 0.087 0.913 6 C 0.001 3.999 7 O -0.397 6.397 8 C -0.002 4.002 9 N -0.369 5.369 10 C 0.371 3.629 11 O -0.474 6.474 12 C -0.162 4.162 13 C -0.212 4.212 14 C -0.161 4.161 15 C -0.112 4.112 16 C -0.172 4.172 17 C -0.159 4.159 18 C -0.100 4.100 19 C -0.042 4.042 20 N 0.065 4.935 21 C -0.514 4.514 22 H 0.157 0.843 23 C -0.192 4.192 24 N -0.491 5.491 25 Si 0.805 3.195 26 H -0.195 1.195 27 H -0.214 1.214 28 H -0.142 1.142 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.243 0.757 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.276 0.724 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.119 0.881 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.800 -7.318 -8.543 11.873 hybrid contribution -0.088 -1.186 0.437 1.268 sum -3.888 -8.504 -8.105 12.375 Atomic orbital electron populations 1.24042 0.96033 1.02560 1.00564 1.23016 0.96251 0.98342 1.00357 1.20623 0.97186 0.96572 0.97128 1.21362 0.96211 0.92902 1.00486 0.91293 1.22365 0.91733 0.98161 0.87649 1.86443 1.49037 1.63330 1.40904 1.21479 0.93893 0.97627 0.87243 1.46832 1.47219 1.16963 1.25874 1.17330 0.78514 0.82746 0.84276 1.90651 1.65758 1.41646 1.49326 1.20568 1.09797 0.90776 0.95035 1.20594 1.06365 0.97622 0.96590 1.18425 1.06154 0.94702 0.96816 1.20459 0.97843 0.99265 0.93650 1.20729 1.03475 0.95272 0.97731 1.21018 1.00762 0.94900 0.99230 1.20163 0.98102 0.99701 0.91992 1.18728 0.98228 0.94090 0.93126 1.40245 1.33137 1.08016 1.12118 1.20466 1.38915 0.88995 1.03037 0.84303 1.26639 0.93094 1.04872 0.94557 1.70090 1.37083 1.38180 1.03746 0.85021 0.77394 0.75494 0.81552 1.19491 1.21384 1.14160 0.88437 0.87413 0.86226 0.88978 0.90539 0.91155 0.92540 0.75720 0.91646 0.92623 0.72359 0.84350 0.84992 0.83622 0.84543 0.88125 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.05 14.32 67.78 0.97 -2.08 16 2 C -0.16 -2.64 9.03 25.65 0.23 -2.41 16 3 C -0.08 -1.40 5.13 29.85 0.15 -1.25 16 4 C -0.09 -2.23 2.25 -10.79 -0.02 -2.26 16 5 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 6 C 0.08 1.67 6.32 71.98 0.46 2.13 16 7 O -0.59 -15.89 9.15 -148.98 -1.36 -17.25 16 8 C 0.12 3.92 5.06 86.38 0.44 4.36 16 9 N -0.71 -29.53 4.97 -466.87 -2.32 -31.85 16 10 C 0.58 28.68 7.76 86.51 0.67 29.35 16 11 O -0.59 -30.45 16.86 -4.27 -0.07 -30.52 16 12 C -0.05 -2.46 6.77 39.91 0.27 -2.19 16 13 C -0.18 -9.30 10.55 22.63 0.24 -9.07 16 14 C -0.16 -7.74 6.16 -21.34 -0.13 -7.87 16 15 C -0.09 -3.83 10.06 22.31 0.22 -3.61 16 16 C -0.15 -5.65 9.97 22.03 0.22 -5.43 16 17 C -0.14 -5.54 10.02 22.32 0.22 -5.31 16 18 C -0.08 -3.83 8.54 22.38 0.19 -3.64 16 19 C 0.07 3.83 6.03 39.06 0.24 4.07 16 20 N -0.27 -14.40 2.81 -331.35 -0.93 -15.33 16 21 C -0.39 -19.16 7.77 84.09 0.65 -18.51 16 22 H 0.14 6.32 4.48 -2.91 -0.01 6.30 16 23 C 0.02 0.84 4.80 84.95 0.41 1.25 16 24 N -0.86 -44.77 10.65 21.67 0.23 -44.54 16 25 Si 0.99 36.15 29.56 68.60 2.03 38.18 16 26 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 27 H -0.29 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.22 -7.07 6.87 99.48 0.68 -6.39 16 29 H 0.10 1.48 7.84 -2.91 -0.02 1.46 16 30 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.12 1.68 6.84 -2.91 -0.02 1.66 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.39 7.79 -2.39 -0.02 1.37 16 34 H 0.07 1.16 6.51 -2.39 -0.02 1.15 16 35 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 36 H 0.39 7.47 9.12 -74.06 -0.68 6.80 16 37 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.43 18.01 2.67 -92.71 -0.25 17.76 16 40 H 0.14 6.50 8.06 -2.91 -0.02 6.48 16 41 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 44 H 0.10 5.00 6.65 -2.91 -0.02 4.98 16 45 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -68.88 366.82 3.08 -65.80 By element: Atomic # 1 Polarization: 57.90 SS G_CDS: 0.08 Total: 57.98 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 5.43 Total: -22.47 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -3.02 Total: -91.72 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.43 Total: -47.77 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -68.88 3.08 -65.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611407350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.217 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds