Wall clock time and date at job start Tue Mar 31 2020 16:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00148 * 2 1 4 4 C 1.52999 * 109.47012 * 124.99839 * 3 2 1 5 5 H 1.09000 * 109.46817 * 55.00261 * 4 3 2 6 6 C 1.52998 * 109.47145 * 295.00463 * 4 3 2 7 7 O 1.42902 * 109.47632 * 64.79925 * 6 4 3 8 8 C 1.52995 * 109.47144 * 175.00302 * 4 3 2 9 9 N 1.46505 * 109.47280 * 183.50679 * 8 4 3 10 10 C 1.34775 * 119.99992 * 185.58703 * 9 8 4 11 11 O 1.21671 * 119.99762 * 4.40505 * 10 9 8 12 12 C 1.46886 * 120.00058 * 184.39772 * 10 9 8 13 13 C 1.36121 * 125.43596 * 174.22209 * 12 10 9 14 14 C 1.41706 * 107.74679 * 180.24167 * 13 12 10 15 15 C 1.40015 * 133.35121 * 179.82125 * 14 13 12 16 16 C 1.36583 * 119.83284 * 179.97438 * 15 14 13 17 17 C 1.38853 * 120.59488 * 359.97438 * 16 15 14 18 18 C 1.37845 * 120.63865 * 359.97438 * 17 16 15 19 19 C 1.39082 * 119.81272 * 0.02562 * 18 17 16 20 20 N 1.37833 * 133.16553 * 180.02562 * 19 18 17 21 21 C 1.36889 * 125.61970 * 359.95274 * 20 19 18 22 22 H 1.07993 * 120.00442 * 137.15411 * 21 20 19 23 23 C 1.39013 * 119.99436 * 317.15008 * 21 20 19 24 24 N 1.31351 * 120.00448 * 335.30581 * 23 21 20 25 25 Si 1.86801 * 119.99557 * 155.03266 * 23 21 20 26 26 H 1.48507 * 109.46994 * 275.30295 * 25 23 21 27 27 H 1.48491 * 109.47547 * 35.30229 * 25 23 21 28 28 H 1.48495 * 109.47213 * 155.30836 * 25 23 21 29 29 H 1.08000 * 119.99915 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99737 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99951 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46573 * 5.00169 * 3 2 1 33 33 H 1.08995 * 109.47321 * 245.00008 * 3 2 1 34 34 H 1.09004 * 109.47307 * 184.79842 * 6 4 3 35 35 H 1.08995 * 109.47205 * 304.79670 * 6 4 3 36 36 H 0.96693 * 114.00067 * 179.97438 * 7 6 4 37 37 H 1.08999 * 109.47093 * 63.50398 * 8 4 3 38 38 H 1.09002 * 109.47227 * 303.50565 * 8 4 3 39 39 H 0.97001 * 119.99799 * 5.58684 * 9 8 4 40 40 H 1.07997 * 126.13093 * 0.02562 * 13 12 10 41 41 H 1.08000 * 120.08439 * 359.93806 * 15 14 13 42 42 H 1.07993 * 119.70328 * 180.02562 * 16 15 14 43 43 H 1.08009 * 119.67869 * 180.02562 * 17 16 15 44 44 H 1.07997 * 120.09358 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99539 * 357.01416 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6826 0.4573 1.1403 6 6 2.2450 1.3217 2.4918 7 8 1.5355 0.0869 2.6097 8 6 3.8875 2.6015 1.1111 9 7 4.8740 2.5879 2.1942 10 6 5.6639 3.6603 2.3998 11 8 5.5039 4.6693 1.7389 12 6 6.7177 3.6112 3.4218 13 6 7.6457 4.5815 3.6460 14 6 8.4774 4.1469 4.7078 15 6 9.5809 4.7126 5.3577 16 6 10.1908 4.0357 6.3752 17 6 9.7262 2.7891 6.7730 18 6 8.6409 2.2120 6.1491 19 6 8.0033 2.8823 5.1105 20 7 6.9226 2.5742 4.3124 21 6 6.1791 1.4271 4.3851 22 1 5.1023 1.4764 4.3184 23 6 6.8101 0.1989 4.5449 24 7 8.0543 0.0438 4.1535 25 14 5.8910 -1.2290 5.3233 26 1 5.9942 -1.1369 6.8019 27 1 4.4622 -1.1755 4.9225 28 1 6.4862 -2.5098 4.8645 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 2.9321 1.4275 3.3314 35 1 1.5362 2.1498 2.4959 36 1 1.0118 0.0099 3.4189 37 1 3.2460 3.4766 1.2149 38 1 4.4024 2.6404 0.1512 39 1 4.9586 1.8069 2.7632 40 1 7.7346 5.5139 3.1084 41 1 9.9493 5.6817 5.0550 42 1 11.0416 4.4742 6.8753 43 1 10.2195 2.2670 7.5796 44 1 8.2866 1.2423 6.4659 45 1 8.5188 0.7730 3.7137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611407353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:21 Heat of formation + Delta-G solvation = -19.468027 kcal Electronic energy + Delta-G solvation = -28204.150761 eV Core-core repulsion = 24380.046271 eV Total energy + Delta-G solvation = -3824.104490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.73389 -38.96808 -37.74338 -36.14822 -35.27335 -34.29162 -33.70140 -31.37194 -30.72924 -29.11833 -28.21529 -26.10015 -25.69874 -24.83754 -22.77612 -21.12135 -20.51497 -20.28252 -19.74029 -19.38508 -18.57407 -17.27477 -16.53299 -15.79619 -15.72311 -15.65065 -15.14540 -14.87707 -14.57120 -14.34377 -14.08412 -14.03216 -13.55846 -13.27449 -13.20733 -13.08269 -12.72301 -12.49445 -12.24243 -12.19150 -11.86672 -11.55783 -11.41437 -11.25333 -10.95316 -10.84036 -10.80489 -10.61514 -10.53757 -10.43027 -10.01453 -9.96614 -9.51393 -9.22247 -9.04146 -8.89301 -8.59356 -7.60989 -7.14846 -6.86206 -4.77582 1.65522 2.44041 2.55211 2.93844 3.02676 3.04199 3.19932 3.71040 3.77348 4.12038 4.20708 4.28985 4.59368 4.77999 4.81617 4.83961 5.10356 5.28238 5.38382 5.47371 5.56308 5.60642 5.63266 5.67750 5.76999 5.78077 5.86456 5.95793 5.97370 6.06062 6.24309 6.26092 6.33523 6.48801 6.70160 6.72517 6.82007 6.89953 6.90595 6.94737 7.15081 7.32147 7.41382 7.48561 7.66543 7.71182 7.73320 8.06709 8.16986 8.55988 8.85196 9.03131 9.95523 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.004108 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.574896 B = 6814.273601 C = 8390.401824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.096 4.096 5 H 0.088 0.912 6 C 0.080 3.920 7 O -0.562 6.562 8 C 0.124 3.876 9 N -0.730 5.730 10 C 0.595 3.405 11 O -0.558 6.558 12 C -0.022 4.022 13 C -0.165 4.165 14 C -0.129 4.129 15 C -0.080 4.080 16 C -0.160 4.160 17 C -0.134 4.134 18 C -0.082 4.082 19 C 0.070 3.930 20 N -0.263 5.263 21 C -0.458 4.458 22 H 0.101 0.899 23 C 0.033 3.967 24 N -0.809 5.809 25 Si 1.073 2.927 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.373 0.627 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.418 0.582 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 -1.100 -1.420 8.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.133 4.133 3 C -0.121 4.121 4 C -0.114 4.114 5 H 0.106 0.894 6 C 0.002 3.998 7 O -0.367 6.367 8 C 0.000 4.000 9 N -0.391 5.391 10 C 0.384 3.616 11 O -0.438 6.438 12 C -0.137 4.137 13 C -0.193 4.193 14 C -0.134 4.134 15 C -0.099 4.099 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.102 4.102 19 C -0.044 4.044 20 N 0.073 4.927 21 C -0.584 4.584 22 H 0.118 0.882 23 C -0.185 4.185 24 N -0.434 5.434 25 Si 0.895 3.105 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.220 0.780 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.265 0.735 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.361 -2.436 -2.067 8.951 hybrid contribution -0.284 1.329 0.363 1.407 sum -8.645 -1.107 -1.704 8.881 Atomic orbital electron populations 1.23545 0.95834 1.00892 1.03808 1.22635 0.95793 0.97765 0.97141 1.20700 0.97691 0.96171 0.97549 1.21377 0.96646 0.98918 0.94494 0.89364 1.22184 0.94367 0.86057 0.97159 1.86533 1.66328 1.38083 1.45729 1.21255 0.90513 0.96900 0.91354 1.46795 1.37200 1.20037 1.35039 1.17234 0.79999 0.82550 0.81814 1.90720 1.71267 1.31844 1.49940 1.20217 1.02018 0.94366 0.97094 1.20410 0.97354 0.99970 1.01544 1.18012 0.99286 0.95571 1.00492 1.20132 0.94989 0.98746 0.96041 1.20333 1.01438 0.96310 0.99816 1.20603 0.97528 0.96243 1.01107 1.20127 0.95862 0.99194 0.95036 1.18430 0.94345 0.95318 0.96326 1.40128 1.20642 1.12632 1.19341 1.20380 0.92212 0.84454 1.61392 0.88188 1.26819 0.96855 1.00201 0.94608 1.70613 1.11338 1.35662 1.25742 0.83436 0.75376 0.74525 0.77114 1.19945 1.19834 1.19793 0.89155 0.89409 0.87715 0.91453 0.90714 0.93240 0.93841 0.78037 0.91413 0.91439 0.73546 0.84820 0.87425 0.87518 0.87202 0.86656 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.07 29.01 0.41 -1.73 16 2 C -0.12 -1.31 7.30 -36.02 -0.26 -1.57 16 3 C -0.08 -0.94 5.13 -27.88 -0.14 -1.08 16 4 C -0.10 -1.26 2.26 -90.62 -0.21 -1.46 16 5 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 6 C 0.08 1.03 6.33 37.16 0.24 1.27 16 7 O -0.56 -6.82 11.20 -35.23 -0.39 -7.21 16 8 C 0.12 1.90 5.11 -4.04 -0.02 1.88 16 9 N -0.73 -13.89 5.08 -61.55 -0.31 -14.20 16 10 C 0.59 13.26 7.77 -12.76 -0.10 13.17 16 11 O -0.56 -13.20 16.82 5.21 0.09 -13.11 16 12 C -0.02 -0.53 6.77 -82.25 -0.56 -1.08 16 13 C -0.17 -3.79 10.55 -39.02 -0.41 -4.20 16 14 C -0.13 -2.93 6.16 -106.89 -0.66 -3.59 16 15 C -0.08 -1.58 10.06 -39.51 -0.40 -1.97 16 16 C -0.16 -2.93 9.97 -39.95 -0.40 -3.33 16 17 C -0.13 -2.61 10.02 -39.50 -0.40 -3.01 16 18 C -0.08 -1.85 8.90 -39.41 -0.35 -2.20 16 19 C 0.07 1.68 5.57 -83.84 -0.47 1.22 16 20 N -0.26 -6.37 2.52 -56.08 -0.14 -6.51 16 21 C -0.46 -10.63 7.69 -15.01 -0.12 -10.75 16 22 H 0.10 2.20 6.29 -52.49 -0.33 1.87 16 23 C 0.03 0.77 4.16 -17.47 -0.07 0.70 16 24 N -0.81 -20.29 12.48 55.50 0.69 -19.60 16 25 Si 1.07 20.08 29.99 -169.99 -5.10 14.98 16 26 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 27 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 28 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 29 H 0.09 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 31 H 0.10 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.71 7.04 -51.93 -0.37 0.35 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.37 3.16 9.12 45.56 0.42 3.57 16 37 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.42 8.15 3.53 -40.82 -0.14 8.01 16 40 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 44 H 0.12 2.65 7.01 -52.49 -0.37 2.28 16 45 H 0.29 7.79 7.43 -40.82 -0.30 7.48 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -28.24 372.28 -8.82 -37.07 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -5.36 Total: 20.72 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -3.91 Total: -17.74 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.24 Total: -40.30 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.31 Total: -20.32 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.10 Total: 14.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.24 -8.82 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611407353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.599 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds