Wall clock time and date at job start Tue Mar 31 2020 16:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00148 * 2 1 4 4 C 1.52999 * 109.47012 * 124.99839 * 3 2 1 5 5 H 1.09000 * 109.46817 * 55.00261 * 4 3 2 6 6 C 1.52998 * 109.47145 * 295.00463 * 4 3 2 7 7 O 1.42902 * 109.47632 * 64.79925 * 6 4 3 8 8 C 1.52995 * 109.47144 * 175.00302 * 4 3 2 9 9 N 1.46505 * 109.47280 * 183.50679 * 8 4 3 10 10 C 1.34775 * 119.99992 * 185.58703 * 9 8 4 11 11 O 1.21671 * 119.99762 * 4.40505 * 10 9 8 12 12 C 1.46886 * 120.00058 * 184.39772 * 10 9 8 13 13 C 1.36121 * 125.43596 * 174.22209 * 12 10 9 14 14 C 1.41706 * 107.74679 * 180.24167 * 13 12 10 15 15 C 1.40015 * 133.35121 * 179.82125 * 14 13 12 16 16 C 1.36583 * 119.83284 * 179.97438 * 15 14 13 17 17 C 1.38853 * 120.59488 * 359.97438 * 16 15 14 18 18 C 1.37845 * 120.63865 * 359.97438 * 17 16 15 19 19 C 1.39082 * 119.81272 * 0.02562 * 18 17 16 20 20 N 1.37833 * 133.16553 * 180.02562 * 19 18 17 21 21 C 1.36889 * 125.61970 * 359.95274 * 20 19 18 22 22 H 1.07993 * 120.00442 * 137.15411 * 21 20 19 23 23 C 1.39013 * 119.99436 * 317.15008 * 21 20 19 24 24 N 1.31351 * 120.00448 * 335.30581 * 23 21 20 25 25 Si 1.86801 * 119.99557 * 155.03266 * 23 21 20 26 26 H 1.48507 * 109.46994 * 275.30295 * 25 23 21 27 27 H 1.48491 * 109.47547 * 35.30229 * 25 23 21 28 28 H 1.48495 * 109.47213 * 155.30836 * 25 23 21 29 29 H 1.08000 * 119.99915 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99737 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99951 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46573 * 5.00169 * 3 2 1 33 33 H 1.08995 * 109.47321 * 245.00008 * 3 2 1 34 34 H 1.09004 * 109.47307 * 184.79842 * 6 4 3 35 35 H 1.08995 * 109.47205 * 304.79670 * 6 4 3 36 36 H 0.96693 * 114.00067 * 179.97438 * 7 6 4 37 37 H 1.08999 * 109.47093 * 63.50398 * 8 4 3 38 38 H 1.09002 * 109.47227 * 303.50565 * 8 4 3 39 39 H 0.97001 * 119.99799 * 5.58684 * 9 8 4 40 40 H 1.07997 * 126.13093 * 0.02562 * 13 12 10 41 41 H 1.08000 * 120.08439 * 359.93806 * 15 14 13 42 42 H 1.07993 * 119.70328 * 180.02562 * 16 15 14 43 43 H 1.08009 * 119.67869 * 180.02562 * 17 16 15 44 44 H 1.07997 * 120.09358 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99539 * 357.01416 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6826 0.4573 1.1403 6 6 2.2450 1.3217 2.4918 7 8 1.5355 0.0869 2.6097 8 6 3.8875 2.6015 1.1111 9 7 4.8740 2.5879 2.1942 10 6 5.6639 3.6603 2.3998 11 8 5.5039 4.6693 1.7389 12 6 6.7177 3.6112 3.4218 13 6 7.6457 4.5815 3.6460 14 6 8.4774 4.1469 4.7078 15 6 9.5809 4.7126 5.3577 16 6 10.1908 4.0357 6.3752 17 6 9.7262 2.7891 6.7730 18 6 8.6409 2.2120 6.1491 19 6 8.0033 2.8823 5.1105 20 7 6.9226 2.5742 4.3124 21 6 6.1791 1.4271 4.3851 22 1 5.1023 1.4764 4.3184 23 6 6.8101 0.1989 4.5449 24 7 8.0543 0.0438 4.1535 25 14 5.8910 -1.2290 5.3233 26 1 5.9942 -1.1369 6.8019 27 1 4.4622 -1.1755 4.9225 28 1 6.4862 -2.5098 4.8645 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 2.9321 1.4275 3.3314 35 1 1.5362 2.1498 2.4959 36 1 1.0118 0.0099 3.4189 37 1 3.2460 3.4766 1.2149 38 1 4.4024 2.6404 0.1512 39 1 4.9586 1.8069 2.7632 40 1 7.7346 5.5139 3.1084 41 1 9.9493 5.6817 5.0550 42 1 11.0416 4.4742 6.8753 43 1 10.2195 2.2670 7.5796 44 1 8.2866 1.2423 6.4659 45 1 8.5188 0.7730 3.7137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611407353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:20 Heat of formation + Delta-G solvation = -35.619105 kcal Electronic energy + Delta-G solvation = -28204.851124 eV Core-core repulsion = 24380.046271 eV Total energy + Delta-G solvation = -3824.804853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.43576 -40.49719 -38.94292 -37.78539 -36.41108 -35.69688 -35.22444 -32.63546 -32.37569 -30.73563 -29.85600 -27.14686 -26.98500 -26.54860 -24.31933 -22.80051 -21.91882 -21.68981 -21.09136 -20.59778 -20.21503 -18.41719 -18.03900 -17.50394 -17.08072 -16.89210 -16.71557 -16.31167 -15.82279 -15.78626 -15.51467 -15.48639 -14.97294 -14.85139 -14.73210 -14.26807 -14.20716 -13.82460 -13.66423 -13.50023 -13.48322 -12.85371 -12.58639 -12.50432 -12.38116 -12.19919 -12.15176 -11.97929 -11.86737 -11.73622 -11.58207 -11.22684 -10.98319 -10.94838 -10.60367 -10.15572 -9.91449 -9.40230 -8.87750 -8.57175 -6.60050 -0.02708 0.93857 1.24217 1.48083 1.52482 1.58482 1.72655 2.13825 2.23630 2.39424 2.59877 2.87006 3.17514 3.20510 3.72045 3.80528 3.92402 4.07951 4.13499 4.31253 4.31437 4.41027 4.44269 4.47403 4.50304 4.59698 4.62725 4.67890 4.72115 4.79214 4.85618 4.98390 5.06403 5.10632 5.15067 5.25330 5.26154 5.39703 5.40806 5.64279 5.72196 5.81622 5.88786 6.01874 6.04646 6.05932 6.40553 6.48290 6.81546 6.88653 7.15381 7.27035 8.08766 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.004108 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.574896 B = 6814.273601 C = 8390.401824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.077 4.077 4 C -0.088 4.088 5 H 0.073 0.927 6 C 0.085 3.915 7 O -0.568 6.568 8 C 0.122 3.878 9 N -0.721 5.721 10 C 0.589 3.411 11 O -0.579 6.579 12 C -0.050 4.050 13 C -0.175 4.175 14 C -0.149 4.149 15 C -0.084 4.084 16 C -0.152 4.152 17 C -0.120 4.120 18 C -0.114 4.114 19 C 0.046 3.954 20 N -0.278 5.278 21 C -0.465 4.465 22 H 0.107 0.893 23 C 0.005 3.995 24 N -0.833 5.833 25 Si 1.114 2.886 26 H -0.266 1.266 27 H -0.249 1.249 28 H -0.278 1.278 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.390 0.610 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.416 0.584 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.100 0.900 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 -1.035 -0.518 9.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.149 4.149 3 C -0.115 4.115 4 C -0.107 4.107 5 H 0.092 0.908 6 C 0.007 3.993 7 O -0.376 6.376 8 C -0.001 4.001 9 N -0.380 5.380 10 C 0.378 3.622 11 O -0.461 6.461 12 C -0.164 4.164 13 C -0.202 4.202 14 C -0.154 4.154 15 C -0.102 4.102 16 C -0.170 4.170 17 C -0.140 4.140 18 C -0.134 4.134 19 C -0.068 4.068 20 N 0.056 4.944 21 C -0.592 4.592 22 H 0.124 0.876 23 C -0.207 4.207 24 N -0.459 5.459 25 Si 0.931 3.069 26 H -0.191 1.191 27 H -0.173 1.173 28 H -0.203 1.203 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.262 0.738 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.160 0.840 44 H 0.118 0.882 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.875 -2.374 -1.163 9.260 hybrid contribution -0.083 1.380 0.136 1.389 sum -8.957 -0.994 -1.027 9.071 Atomic orbital electron populations 1.23693 0.95500 1.01727 1.02105 1.22592 0.96187 0.97386 0.98703 1.20660 0.97405 0.96667 0.96773 1.21290 0.96582 0.96855 0.95957 0.90833 1.22066 0.94323 0.86925 0.96023 1.86500 1.66479 1.37575 1.47016 1.21468 0.90031 0.98447 0.90117 1.46788 1.36946 1.18837 1.35401 1.17231 0.80281 0.83062 0.81613 1.90684 1.72056 1.32617 1.50753 1.20607 1.03021 0.94839 0.97910 1.20661 0.97467 1.00263 1.01854 1.18397 1.00521 0.95577 1.00899 1.20562 0.93800 1.00028 0.95829 1.20823 1.01914 0.95427 0.98869 1.21081 0.95790 0.96543 1.00619 1.20215 0.97812 0.99241 0.96161 1.18880 0.94567 0.96305 0.97029 1.40276 1.21261 1.12950 1.19877 1.20629 0.92595 0.84665 1.61261 0.87621 1.28091 0.96632 1.02214 0.93756 1.70738 1.12513 1.34684 1.27919 0.82967 0.75622 0.71550 0.76748 1.19105 1.17277 1.20310 0.88348 0.88536 0.88523 0.90393 0.90039 0.95209 0.92517 0.76127 0.90838 0.91241 0.73814 0.83827 0.84402 0.83060 0.83957 0.88173 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.63 14.07 67.78 0.95 -2.67 16 2 C -0.13 -2.78 7.30 25.65 0.19 -2.59 16 3 C -0.08 -1.63 5.13 29.85 0.15 -1.48 16 4 C -0.09 -2.27 2.26 -10.80 -0.02 -2.29 16 5 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 6 C 0.08 2.10 6.33 71.98 0.46 2.56 16 7 O -0.57 -12.88 11.20 -148.98 -1.67 -14.54 16 8 C 0.12 3.75 5.11 86.38 0.44 4.20 16 9 N -0.72 -28.15 5.08 -466.88 -2.37 -30.52 16 10 C 0.59 27.10 7.77 86.51 0.67 27.78 16 11 O -0.58 -28.02 16.82 -4.26 -0.07 -28.09 16 12 C -0.05 -2.43 6.77 39.91 0.27 -2.16 16 13 C -0.17 -8.20 10.55 22.63 0.24 -7.96 16 14 C -0.15 -6.82 6.16 -21.33 -0.13 -6.95 16 15 C -0.08 -3.11 10.06 22.31 0.22 -2.89 16 16 C -0.15 -5.05 9.97 22.03 0.22 -4.83 16 17 C -0.12 -4.41 10.02 22.32 0.22 -4.19 16 18 C -0.11 -5.15 8.90 22.38 0.20 -4.96 16 19 C 0.05 2.26 5.57 39.06 0.22 2.48 16 20 N -0.28 -13.95 2.52 -331.35 -0.84 -14.79 16 21 C -0.47 -22.26 7.69 84.09 0.65 -21.61 16 22 H 0.11 4.78 6.29 -2.91 -0.02 4.76 16 23 C 0.01 0.25 4.16 84.95 0.35 0.61 16 24 N -0.83 -43.22 12.48 21.67 0.27 -42.95 16 25 Si 1.11 40.44 29.99 68.60 2.06 42.50 16 26 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 27 H -0.25 -8.00 7.11 99.48 0.71 -7.29 16 28 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 29 H 0.10 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.10 1.64 7.84 -2.91 -0.02 1.62 16 31 H 0.10 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.08 1.48 7.79 -2.39 -0.02 1.47 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.03 0.85 7.04 -2.38 -0.02 0.83 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.39 5.83 9.12 -74.06 -0.68 5.15 16 37 H 0.07 2.19 8.09 -2.39 -0.02 2.17 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.42 16.72 3.53 -92.71 -0.33 16.39 16 40 H 0.14 6.21 8.06 -2.91 -0.02 6.19 16 41 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.10 4.72 7.01 -2.91 -0.02 4.70 16 45 H 0.27 15.10 7.43 -92.71 -0.69 14.41 16 Total: -1.00 -62.92 372.28 2.78 -60.14 By element: Atomic # 1 Polarization: 55.13 SS G_CDS: 0.09 Total: 55.23 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 5.30 Total: -26.98 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -2.93 Total: -88.25 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -1.74 Total: -42.63 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.06 Total: 42.50 kcal Total: -62.92 2.78 -60.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611407353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.525 kcal (2) G-P(sol) polarization free energy of solvation -62.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds