Wall clock time and date at job start Tue Mar 31 2020 15:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31003 * 119.99871 * 2 1 4 4 C 1.50694 * 119.99885 * 185.11590 * 3 2 1 5 5 C 1.53002 * 109.46784 * 121.12060 * 4 3 2 6 6 H 1.09000 * 109.47120 * 54.92858 * 5 4 3 7 7 C 1.53005 * 109.47523 * 174.92932 * 5 4 3 8 8 O 1.42905 * 109.46890 * 54.99447 * 7 5 4 9 9 N 1.46504 * 109.47271 * 294.92562 * 5 4 3 10 10 C 1.34772 * 120.00073 * 153.21789 * 9 5 4 11 11 O 1.21665 * 120.00189 * 5.05878 * 10 9 5 12 12 C 1.46887 * 119.99994 * 185.05497 * 10 9 5 13 13 C 1.36126 * 125.44081 * 186.18505 * 12 10 9 14 14 C 1.41692 * 107.75385 * 180.02562 * 13 12 10 15 15 C 1.40019 * 133.35294 * 180.02562 * 14 13 12 16 16 C 1.36576 * 119.83253 * 180.02562 * 15 14 13 17 17 C 1.38855 * 120.60112 * 359.95558 * 16 15 14 18 18 C 1.37845 * 120.63248 * 0.02562 * 17 16 15 19 19 C 1.39089 * 119.81536 * 0.02562 * 18 17 16 20 20 N 1.37827 * 133.16741 * 179.97438 * 19 18 17 21 21 C 1.36894 * 125.61886 * 359.73173 * 20 19 18 22 22 H 1.08000 * 119.99937 * 221.66980 * 21 20 19 23 23 C 1.39008 * 119.99814 * 41.66969 * 21 20 19 24 24 N 1.31352 * 120.00095 * 11.15531 * 23 21 20 25 25 Si 1.86799 * 119.99924 * 191.15251 * 23 21 20 26 26 H 1.48495 * 109.47490 * 5.04288 * 25 23 21 27 27 H 1.48500 * 109.47012 * 125.04820 * 25 23 21 28 28 H 1.48502 * 109.47131 * 245.04394 * 25 23 21 29 29 H 1.09004 * 109.46692 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47225 * 299.99126 * 1 2 3 31 31 H 1.08990 * 109.47703 * 59.99662 * 1 2 3 32 32 H 1.07998 * 120.00097 * 180.02562 * 2 1 3 33 33 H 1.08000 * 120.00119 * 5.12604 * 3 2 1 34 34 H 1.09005 * 109.47606 * 1.12095 * 4 3 2 35 35 H 1.09001 * 109.47697 * 241.11441 * 4 3 2 36 36 H 1.08991 * 109.47575 * 174.99763 * 7 5 4 37 37 H 1.09004 * 109.46499 * 294.99894 * 7 5 4 38 38 H 0.96697 * 113.99856 * 180.02562 * 8 7 5 39 39 H 0.97002 * 119.99938 * 333.22834 * 9 5 4 40 40 H 1.08004 * 126.11964 * 0.02562 * 13 12 10 41 41 H 1.07997 * 120.08408 * 359.96470 * 15 14 13 42 42 H 1.07997 * 119.70178 * 179.97438 * 16 15 14 43 43 H 1.07995 * 119.68390 * 180.02562 * 17 16 15 44 44 H 1.08000 * 120.09214 * 179.97438 * 18 17 16 45 45 H 0.96999 * 120.00082 * 184.95519 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6644 1.1371 -0.1164 5 6 4.0787 1.9379 -1.3525 6 1 3.6440 2.9362 -1.3013 7 6 5.6040 2.0478 -1.4015 8 8 6.1777 0.7399 -1.3511 9 7 3.5993 1.2577 -2.5583 10 6 3.3491 1.9661 -3.6772 11 8 3.6080 3.1543 -3.7156 12 6 2.7639 1.3037 -4.8503 13 6 2.5762 1.8789 -6.0698 14 6 1.9886 0.9089 -6.9192 15 6 1.5782 0.9255 -8.2577 16 6 1.0307 -0.1950 -8.8145 17 6 0.8772 -1.3539 -8.0652 18 6 1.2740 -1.3948 -6.7457 19 6 1.8333 -0.2659 -6.1564 20 7 2.3139 -0.0024 -4.8918 21 6 2.3376 -0.8873 -3.8476 22 1 2.0728 -0.5572 -2.8539 23 6 2.7026 -2.2107 -4.0662 24 7 3.2323 -2.5648 -5.2148 25 14 2.4400 -3.4855 -2.7263 26 1 1.7220 -2.8634 -1.5849 27 1 1.6336 -4.6104 -3.2645 28 1 3.7556 -3.9963 -2.2643 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8898 32 1 2.0470 -0.9353 -0.0004 33 1 1.6252 2.0680 0.0836 34 1 4.0235 0.1122 -0.2103 35 1 4.0971 1.5936 0.7739 36 1 5.9034 2.5404 -2.3265 37 1 5.9537 2.6310 -0.5496 38 1 7.1442 0.7331 -1.3779 39 1 3.4618 0.2975 -2.5513 40 1 2.8299 2.8930 -6.3412 41 1 1.6934 1.8225 -8.8482 42 1 0.7145 -0.1797 -9.8471 43 1 0.4429 -2.2316 -8.5205 44 1 1.1502 -2.3008 -6.1709 45 1 3.4205 -3.4992 -5.3946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613847726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:58 Heat of formation + Delta-G solvation = -18.019460 kcal Electronic energy + Delta-G solvation = -28875.325813 eV Core-core repulsion = 25051.284138 eV Total energy + Delta-G solvation = -3824.041675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.47254 -38.92556 -37.02997 -35.87845 -35.60505 -33.87927 -33.44784 -30.92683 -30.56014 -28.93440 -28.19772 -27.48572 -24.99670 -24.31565 -23.21385 -21.01655 -20.69227 -19.91927 -19.49492 -19.03313 -18.08993 -17.34335 -16.35266 -15.82631 -15.57721 -14.87845 -14.75701 -14.59138 -14.46368 -13.99771 -13.82010 -13.59522 -13.31678 -13.09031 -12.97300 -12.92746 -12.79738 -12.46183 -12.25966 -11.93822 -11.84539 -11.69798 -11.37875 -11.34889 -11.20821 -10.88174 -10.77620 -10.68462 -10.55714 -10.20037 -9.88194 -9.77451 -9.33571 -9.21564 -8.73240 -8.63153 -8.41253 -7.20552 -6.83603 -6.52742 -4.64072 1.87207 2.42742 2.76886 2.94334 2.96870 3.00629 3.18204 3.71414 3.85237 4.27000 4.47003 4.57023 4.73013 4.88697 5.10522 5.17029 5.27700 5.45199 5.50988 5.53904 5.67186 5.68149 5.80666 5.85388 5.89810 5.98438 6.01533 6.11487 6.13444 6.19802 6.33835 6.46126 6.60153 6.72549 6.86604 6.90062 6.94830 7.03226 7.12399 7.14983 7.16179 7.49587 7.60502 7.67072 7.76764 7.95758 7.98238 8.32450 8.33739 8.72424 9.02315 9.29231 10.14306 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.005520 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.381038 B = 5070.840763 C = 6168.453502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.155 4.155 3 C -0.163 4.163 4 C -0.092 4.092 5 C 0.152 3.848 6 H 0.096 0.904 7 C 0.064 3.936 8 O -0.564 6.564 9 N -0.712 5.712 10 C 0.596 3.404 11 O -0.565 6.565 12 C -0.019 4.019 13 C -0.167 4.167 14 C -0.133 4.133 15 C -0.086 4.086 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.053 4.053 19 C 0.103 3.897 20 N -0.256 5.256 21 C -0.370 4.370 22 H 0.112 0.888 23 C 0.059 3.941 24 N -0.815 5.815 25 Si 0.918 3.082 26 H -0.256 1.256 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.374 0.626 39 H 0.419 0.581 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 1.876 7.713 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.173 4.173 3 C -0.181 4.181 4 C -0.129 4.129 5 C 0.046 3.954 6 H 0.114 0.886 7 C -0.016 4.016 8 O -0.369 6.369 9 N -0.371 5.371 10 C 0.386 3.614 11 O -0.445 6.445 12 C -0.134 4.134 13 C -0.195 4.195 14 C -0.138 4.138 15 C -0.105 4.105 16 C -0.180 4.180 17 C -0.169 4.169 18 C -0.073 4.073 19 C -0.012 4.012 20 N 0.080 4.920 21 C -0.497 4.497 22 H 0.129 0.871 23 C -0.155 4.155 24 N -0.443 5.443 25 Si 0.741 3.259 26 H -0.180 1.180 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.220 0.780 39 H 0.265 0.735 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.195 2.109 8.008 8.283 hybrid contribution 0.632 -1.040 0.388 1.277 sum 0.436 1.069 8.396 8.475 Atomic orbital electron populations 1.20822 0.93345 1.02201 1.01659 1.22866 0.96173 0.98023 1.00198 1.22687 0.95507 0.98062 1.01833 1.20844 0.93255 1.02156 0.96675 1.20917 0.91458 0.97677 0.85329 0.88639 1.22678 0.94386 0.84469 1.00021 1.86532 1.24561 1.28340 1.97436 1.46605 1.66819 1.13438 1.10210 1.17288 0.76739 0.85564 0.81803 1.90692 1.55265 1.15253 1.83322 1.20087 1.09665 0.88012 0.95670 1.20358 1.08712 0.98958 0.91497 1.18023 1.07119 0.94283 0.94392 1.20047 0.99817 0.97510 0.93157 1.20255 1.04921 0.94026 0.98781 1.20568 1.04684 0.97591 0.94051 1.20091 0.97252 0.95926 0.94044 1.18198 1.01612 0.95029 0.86388 1.39957 1.37131 1.06979 1.07906 1.19672 1.49786 0.90712 0.89534 0.87090 1.25625 0.92992 0.98881 0.97965 1.69975 1.32071 1.19170 1.23114 0.86002 0.79082 0.80089 0.80693 1.17971 1.19659 1.19661 0.92257 0.92237 0.91448 0.87562 0.87661 0.90159 0.90309 0.92875 0.93427 0.78046 0.73550 0.85142 0.87837 0.87999 0.87776 0.86815 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 10.17 36.01 0.37 -1.24 16 2 C -0.15 -2.23 9.86 -36.03 -0.36 -2.58 16 3 C -0.16 -2.27 8.88 -36.03 -0.32 -2.59 16 4 C -0.09 -1.26 4.93 -27.89 -0.14 -1.39 16 5 C 0.15 2.41 2.34 -67.92 -0.16 2.25 16 6 H 0.10 1.52 7.60 -51.93 -0.39 1.13 16 7 C 0.06 0.90 6.87 37.16 0.26 1.16 16 8 O -0.56 -8.13 12.83 -35.23 -0.45 -8.58 16 9 N -0.71 -14.05 4.50 -55.04 -0.25 -14.30 16 10 C 0.60 13.57 7.74 -12.76 -0.10 13.47 16 11 O -0.57 -13.37 16.53 5.22 0.09 -13.28 16 12 C -0.02 -0.47 6.77 -82.25 -0.56 -1.03 16 13 C -0.17 -4.00 10.55 -39.02 -0.41 -4.41 16 14 C -0.13 -3.19 6.16 -106.89 -0.66 -3.85 16 15 C -0.09 -1.80 10.06 -39.51 -0.40 -2.20 16 16 C -0.16 -3.14 9.97 -39.95 -0.40 -3.53 16 17 C -0.15 -3.04 10.02 -39.50 -0.40 -3.44 16 18 C -0.05 -1.25 8.53 -39.41 -0.34 -1.59 16 19 C 0.10 2.59 6.05 -83.84 -0.51 2.08 16 20 N -0.26 -6.45 2.82 -56.08 -0.16 -6.60 16 21 C -0.37 -8.85 7.73 -15.01 -0.12 -8.96 16 22 H 0.11 2.53 6.38 -52.49 -0.34 2.19 16 23 C 0.06 1.39 4.67 -17.47 -0.08 1.30 16 24 N -0.81 -20.25 10.66 55.50 0.59 -19.66 16 25 Si 0.92 17.72 29.57 -169.99 -5.03 12.69 16 26 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 28 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.11 1.58 7.84 -52.49 -0.41 1.17 16 33 H 0.11 1.39 8.05 -52.49 -0.42 0.97 16 34 H 0.08 1.20 7.38 -51.93 -0.38 0.81 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.37 3.67 9.12 45.56 0.42 4.09 16 39 H 0.42 8.74 4.69 -40.82 -0.19 8.55 16 40 H 0.13 2.88 8.06 -52.48 -0.42 2.45 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.11 2.71 6.51 -52.49 -0.34 2.36 16 45 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -29.28 376.51 -9.27 -38.55 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -5.43 Total: 22.07 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -4.31 Total: -16.56 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.19 Total: -40.56 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.37 Total: -21.87 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.28 -9.27 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613847726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.530 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds