Wall clock time and date at job start Tue Mar 31 2020 15:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31003 * 119.99871 * 2 1 4 4 C 1.50694 * 119.99885 * 185.11590 * 3 2 1 5 5 C 1.53002 * 109.46784 * 121.12060 * 4 3 2 6 6 H 1.09000 * 109.47120 * 54.92858 * 5 4 3 7 7 C 1.53005 * 109.47523 * 174.92932 * 5 4 3 8 8 O 1.42905 * 109.46890 * 54.99447 * 7 5 4 9 9 N 1.46504 * 109.47271 * 294.92562 * 5 4 3 10 10 C 1.34772 * 120.00073 * 153.21789 * 9 5 4 11 11 O 1.21665 * 120.00189 * 5.05878 * 10 9 5 12 12 C 1.46887 * 119.99994 * 185.05497 * 10 9 5 13 13 C 1.36126 * 125.44081 * 186.18505 * 12 10 9 14 14 C 1.41692 * 107.75385 * 180.02562 * 13 12 10 15 15 C 1.40019 * 133.35294 * 180.02562 * 14 13 12 16 16 C 1.36576 * 119.83253 * 180.02562 * 15 14 13 17 17 C 1.38855 * 120.60112 * 359.95558 * 16 15 14 18 18 C 1.37845 * 120.63248 * 0.02562 * 17 16 15 19 19 C 1.39089 * 119.81536 * 0.02562 * 18 17 16 20 20 N 1.37827 * 133.16741 * 179.97438 * 19 18 17 21 21 C 1.36894 * 125.61886 * 359.73173 * 20 19 18 22 22 H 1.08000 * 119.99937 * 221.66980 * 21 20 19 23 23 C 1.39008 * 119.99814 * 41.66969 * 21 20 19 24 24 N 1.31352 * 120.00095 * 11.15531 * 23 21 20 25 25 Si 1.86799 * 119.99924 * 191.15251 * 23 21 20 26 26 H 1.48495 * 109.47490 * 5.04288 * 25 23 21 27 27 H 1.48500 * 109.47012 * 125.04820 * 25 23 21 28 28 H 1.48502 * 109.47131 * 245.04394 * 25 23 21 29 29 H 1.09004 * 109.46692 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47225 * 299.99126 * 1 2 3 31 31 H 1.08990 * 109.47703 * 59.99662 * 1 2 3 32 32 H 1.07998 * 120.00097 * 180.02562 * 2 1 3 33 33 H 1.08000 * 120.00119 * 5.12604 * 3 2 1 34 34 H 1.09005 * 109.47606 * 1.12095 * 4 3 2 35 35 H 1.09001 * 109.47697 * 241.11441 * 4 3 2 36 36 H 1.08991 * 109.47575 * 174.99763 * 7 5 4 37 37 H 1.09004 * 109.46499 * 294.99894 * 7 5 4 38 38 H 0.96697 * 113.99856 * 180.02562 * 8 7 5 39 39 H 0.97002 * 119.99938 * 333.22834 * 9 5 4 40 40 H 1.08004 * 126.11964 * 0.02562 * 13 12 10 41 41 H 1.07997 * 120.08408 * 359.96470 * 15 14 13 42 42 H 1.07997 * 119.70178 * 179.97438 * 16 15 14 43 43 H 1.07995 * 119.68390 * 180.02562 * 17 16 15 44 44 H 1.08000 * 120.09214 * 179.97438 * 18 17 16 45 45 H 0.96999 * 120.00082 * 184.95519 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6644 1.1371 -0.1164 5 6 4.0787 1.9379 -1.3525 6 1 3.6440 2.9362 -1.3013 7 6 5.6040 2.0478 -1.4015 8 8 6.1777 0.7399 -1.3511 9 7 3.5993 1.2577 -2.5583 10 6 3.3491 1.9661 -3.6772 11 8 3.6080 3.1543 -3.7156 12 6 2.7639 1.3037 -4.8503 13 6 2.5762 1.8789 -6.0698 14 6 1.9886 0.9089 -6.9192 15 6 1.5782 0.9255 -8.2577 16 6 1.0307 -0.1950 -8.8145 17 6 0.8772 -1.3539 -8.0652 18 6 1.2740 -1.3948 -6.7457 19 6 1.8333 -0.2659 -6.1564 20 7 2.3139 -0.0024 -4.8918 21 6 2.3376 -0.8873 -3.8476 22 1 2.0728 -0.5572 -2.8539 23 6 2.7026 -2.2107 -4.0662 24 7 3.2323 -2.5648 -5.2148 25 14 2.4400 -3.4855 -2.7263 26 1 1.7220 -2.8634 -1.5849 27 1 1.6336 -4.6104 -3.2645 28 1 3.7556 -3.9963 -2.2643 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8898 32 1 2.0470 -0.9353 -0.0004 33 1 1.6252 2.0680 0.0836 34 1 4.0235 0.1122 -0.2103 35 1 4.0971 1.5936 0.7739 36 1 5.9034 2.5404 -2.3265 37 1 5.9537 2.6310 -0.5496 38 1 7.1442 0.7331 -1.3779 39 1 3.4618 0.2975 -2.5513 40 1 2.8299 2.8930 -6.3412 41 1 1.6934 1.8225 -8.8482 42 1 0.7145 -0.1797 -9.8471 43 1 0.4429 -2.2316 -8.5205 44 1 1.1502 -2.3008 -6.1709 45 1 3.4205 -3.4992 -5.3946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613847726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:57 Heat of formation + Delta-G solvation = -35.174718 kcal Electronic energy + Delta-G solvation = -28876.069721 eV Core-core repulsion = 25051.284138 eV Total energy + Delta-G solvation = -3824.785583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.21843 -40.48995 -38.39084 -37.57522 -36.73908 -35.50115 -34.96558 -32.52360 -32.09896 -30.59927 -29.72194 -28.82628 -26.79946 -25.46723 -24.79732 -22.73677 -22.18517 -21.41966 -21.06677 -20.37574 -19.80553 -18.59188 -17.94029 -17.34522 -17.20855 -16.50031 -16.27835 -16.19254 -15.87356 -15.46093 -15.08580 -14.90392 -14.73489 -14.66491 -14.61356 -14.44658 -14.17680 -13.90856 -13.62927 -13.48503 -13.35517 -13.04949 -12.99238 -12.84549 -12.48079 -12.32241 -12.15520 -12.08470 -11.87881 -11.79853 -11.46697 -11.17071 -10.98413 -10.87977 -10.39436 -10.03512 -9.77900 -8.96958 -8.61064 -8.28290 -6.47697 0.12945 1.10983 1.31080 1.35970 1.36824 1.44074 1.49872 2.08531 2.31167 2.50568 2.80715 2.94620 3.37284 3.42271 3.74269 3.98004 4.08667 4.18063 4.25015 4.32269 4.39119 4.43489 4.49350 4.55151 4.60939 4.69175 4.75043 4.78008 4.83060 4.87120 5.01104 5.02141 5.04474 5.10139 5.19685 5.23279 5.37196 5.46113 5.58462 5.74964 5.80282 5.91368 5.96168 5.97249 6.21990 6.27266 6.57395 6.62963 6.87964 6.94615 7.30332 7.49830 8.38847 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.005520 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.381038 B = 5070.840763 C = 6168.453502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.168 4.168 3 C -0.165 4.165 4 C -0.082 4.082 5 C 0.141 3.859 6 H 0.095 0.905 7 C 0.069 3.931 8 O -0.582 6.582 9 N -0.704 5.704 10 C 0.591 3.409 11 O -0.583 6.583 12 C -0.047 4.047 13 C -0.181 4.181 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.153 4.153 17 C -0.138 4.138 18 C -0.082 4.082 19 C 0.072 3.928 20 N -0.268 5.268 21 C -0.383 4.383 22 H 0.116 0.884 23 C 0.025 3.975 24 N -0.849 5.849 25 Si 0.978 3.022 26 H -0.241 1.241 27 H -0.269 1.269 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.393 0.607 39 H 0.414 0.586 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.101 0.899 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 1.535 8.157 8.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.186 4.186 3 C -0.183 4.183 4 C -0.120 4.120 5 C 0.037 3.963 6 H 0.113 0.887 7 C -0.010 4.010 8 O -0.390 6.390 9 N -0.360 5.360 10 C 0.380 3.620 11 O -0.466 6.466 12 C -0.162 4.162 13 C -0.209 4.209 14 C -0.160 4.160 15 C -0.111 4.111 16 C -0.172 4.172 17 C -0.158 4.158 18 C -0.102 4.102 19 C -0.042 4.042 20 N 0.067 4.933 21 C -0.510 4.510 22 H 0.133 0.867 23 C -0.185 4.185 24 N -0.478 5.478 25 Si 0.798 3.202 26 H -0.164 1.164 27 H -0.193 1.193 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.242 0.758 39 H 0.258 0.742 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.154 0.846 44 H 0.119 0.881 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.521 1.775 8.475 8.674 hybrid contribution 0.738 -0.923 0.155 1.192 sum 0.218 0.853 8.630 8.674 Atomic orbital electron populations 1.20824 0.92534 1.02595 1.01963 1.22994 0.96975 0.97944 1.00683 1.22818 0.95803 0.98268 1.01411 1.20805 0.93182 1.01335 0.96666 1.21266 0.92872 0.97640 0.84507 0.88734 1.22586 0.93074 0.84734 1.00577 1.86481 1.26556 1.28498 1.97443 1.46609 1.65773 1.13044 1.10590 1.17227 0.76978 0.85446 0.82304 1.90656 1.56413 1.15744 1.83741 1.20535 1.10459 0.88419 0.96822 1.20591 1.09062 0.99506 0.91761 1.18416 1.07832 0.93897 0.95870 1.20457 0.99180 0.99326 0.92133 1.20725 1.03146 0.92764 1.00542 1.21017 1.02725 0.99196 0.92865 1.20174 0.99250 0.95223 0.95506 1.18677 1.02540 0.96180 0.86834 1.40152 1.37532 1.07231 1.08340 1.19958 1.50142 0.91175 0.89718 0.86693 1.26436 0.92156 1.00186 0.99767 1.70068 1.33135 1.19611 1.24996 0.85114 0.78985 0.77557 0.78550 1.16382 1.19339 1.19668 0.91867 0.90167 0.92846 0.88211 0.86950 0.91292 0.87095 0.95248 0.89380 0.75784 0.74191 0.84248 0.84967 0.83662 0.84601 0.88140 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 10.17 71.24 0.72 -2.36 16 2 C -0.17 -4.70 9.86 25.64 0.25 -4.44 16 3 C -0.17 -4.43 8.88 25.64 0.23 -4.20 16 4 C -0.08 -2.13 4.93 29.85 0.15 -1.98 16 5 C 0.14 4.40 2.34 44.99 0.11 4.50 16 6 H 0.09 2.96 7.60 -2.39 -0.02 2.94 16 7 C 0.07 1.88 6.87 71.98 0.49 2.38 16 8 O -0.58 -16.10 12.83 -148.98 -1.91 -18.01 16 9 N -0.70 -28.29 4.50 -446.30 -2.01 -30.30 16 10 C 0.59 27.79 7.74 86.51 0.67 28.46 16 11 O -0.58 -28.36 16.53 -4.24 -0.07 -28.43 16 12 C -0.05 -2.42 6.77 39.91 0.27 -2.15 16 13 C -0.18 -8.92 10.55 22.63 0.24 -8.68 16 14 C -0.16 -7.53 6.16 -21.34 -0.13 -7.66 16 15 C -0.09 -3.70 10.06 22.31 0.22 -3.48 16 16 C -0.15 -5.53 9.97 22.03 0.22 -5.31 16 17 C -0.14 -5.40 10.02 22.32 0.22 -5.18 16 18 C -0.08 -3.86 8.53 22.38 0.19 -3.67 16 19 C 0.07 3.73 6.05 39.06 0.24 3.97 16 20 N -0.27 -14.00 2.82 -331.34 -0.93 -14.93 16 21 C -0.38 -18.86 7.73 84.09 0.65 -18.21 16 22 H 0.12 5.38 6.38 -2.91 -0.02 5.37 16 23 C 0.03 1.20 4.67 84.95 0.40 1.59 16 24 N -0.85 -43.21 10.66 21.67 0.23 -42.98 16 25 Si 0.98 36.44 29.57 68.60 2.03 38.46 16 26 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 27 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 28 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 29 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 2.90 7.84 -2.91 -0.02 2.87 16 33 H 0.11 2.84 8.05 -2.91 -0.02 2.82 16 34 H 0.07 1.97 7.38 -2.38 -0.02 1.95 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.39 7.17 9.12 -74.06 -0.68 6.50 16 39 H 0.41 17.65 4.69 -92.71 -0.43 17.22 16 40 H 0.14 6.35 8.06 -2.91 -0.02 6.32 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 44 H 0.10 4.92 6.51 -2.91 -0.02 4.90 16 45 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -65.42 376.51 2.39 -63.03 By element: Atomic # 1 Polarization: 59.67 SS G_CDS: -0.09 Total: 59.58 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 5.14 Total: -26.42 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -2.71 Total: -88.21 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -1.98 Total: -46.44 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.46 kcal Total: -65.42 2.39 -63.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613847726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.856 kcal (2) G-P(sol) polarization free energy of solvation -65.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds