Wall clock time and date at job start Tue Mar 31 2020 15:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.31002 * 119.99729 * 2 1 4 4 C 1.50697 * 120.00131 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46956 * 125.00476 * 4 3 2 6 6 H 1.09008 * 109.47056 * 303.14014 * 5 4 3 7 7 C 1.52997 * 109.47368 * 183.13861 * 5 4 3 8 8 O 1.42905 * 109.46959 * 304.99738 * 7 5 4 9 9 N 1.46508 * 109.47051 * 63.13619 * 5 4 3 10 10 C 1.34769 * 120.00051 * 201.94599 * 9 5 4 11 11 O 1.21668 * 120.00207 * 4.77930 * 10 9 5 12 12 C 1.46892 * 120.00226 * 184.78347 * 10 9 5 13 13 C 1.36121 * 125.44064 * 173.95931 * 12 10 9 14 14 C 1.41702 * 107.74771 * 180.27996 * 13 12 10 15 15 C 1.40017 * 133.34682 * 179.77853 * 14 13 12 16 16 C 1.36584 * 119.82946 * 179.97438 * 15 14 13 17 17 C 1.38854 * 120.59659 * 359.96334 * 16 15 14 18 18 C 1.37843 * 120.63380 * 0.02562 * 17 16 15 19 19 C 1.39084 * 119.81626 * 0.02562 * 18 17 16 20 20 N 1.37837 * 133.16094 * 180.02562 * 19 18 17 21 21 C 1.36888 * 125.62472 * 359.97005 * 20 19 18 22 22 H 1.08005 * 120.00107 * 137.15272 * 21 20 19 23 23 C 1.39007 * 119.99990 * 317.16021 * 21 20 19 24 24 N 1.31349 * 120.00011 * 334.70760 * 23 21 20 25 25 Si 1.86800 * 119.99881 * 154.71535 * 23 21 20 26 26 H 1.48507 * 109.47172 * 184.98351 * 25 23 21 27 27 H 1.48497 * 109.47238 * 304.98230 * 25 23 21 28 28 H 1.48502 * 109.47309 * 64.98592 * 25 23 21 29 29 H 1.08995 * 109.47082 * 300.00674 * 1 2 3 30 30 H 1.09006 * 109.46741 * 60.00569 * 1 2 3 31 31 H 1.08994 * 109.46646 * 180.02562 * 1 2 3 32 32 H 1.07992 * 119.99890 * 179.97438 * 2 1 3 33 33 H 1.08005 * 119.99767 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47066 * 5.01009 * 4 3 2 35 35 H 1.09000 * 109.47721 * 245.00361 * 4 3 2 36 36 H 1.08994 * 109.47247 * 65.00161 * 7 5 4 37 37 H 1.08996 * 109.47177 * 185.00257 * 7 5 4 38 38 H 0.96704 * 113.99944 * 179.97438 * 8 7 5 39 39 H 0.97002 * 119.99537 * 21.94498 * 9 5 4 40 40 H 1.07997 * 126.12348 * 0.02562 * 13 12 10 41 41 H 1.08003 * 120.08974 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.70028 * 179.97438 * 16 15 14 43 43 H 1.07999 * 119.68143 * 180.02562 * 17 16 15 44 44 H 1.08009 * 120.09088 * 179.97438 * 18 17 16 45 45 H 0.97005 * 119.99882 * 356.41503 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 -0.0006 5 6 1.8697 3.2953 1.1810 6 1 1.7264 2.7411 2.1087 7 6 1.0501 4.5864 1.2264 8 8 1.1450 5.2553 -0.0329 9 7 3.2888 3.6230 1.0221 10 6 4.0248 3.9691 2.0967 11 8 3.5347 3.9255 3.2095 12 6 5.4188 4.3990 1.9246 13 6 6.2236 4.8813 2.9108 14 6 7.4811 5.1850 2.3324 15 6 8.6755 5.7035 2.8470 16 6 9.7471 5.8897 2.0207 17 6 9.6640 5.5684 0.6724 18 6 8.4989 5.0564 0.1428 19 6 7.3941 4.8590 0.9643 20 7 6.1235 4.3760 0.7358 21 6 5.6381 3.9481 -0.4705 22 1 5.0442 3.0476 -0.5250 23 6 5.9098 4.6724 -1.6255 24 7 6.1718 5.9572 -1.5486 25 14 5.9020 3.8185 -3.2869 26 1 6.3364 4.7746 -4.3369 27 1 6.8337 2.6627 -3.2538 28 1 4.5296 3.3395 -3.5909 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 2.0470 -0.9352 0.0004 33 1 3.2421 1.1345 -0.0004 34 1 0.3402 2.2424 0.0888 35 1 1.6032 2.9713 -0.9320 36 1 0.0069 4.3475 1.4332 37 1 1.4370 5.2349 2.0123 38 1 0.6481 6.0838 -0.0766 39 1 3.6985 3.5908 0.1435 40 1 5.9511 5.0130 3.9475 41 1 8.7495 5.9557 3.8945 42 1 10.6672 6.2902 2.4197 43 1 10.5205 5.7212 0.0325 44 1 8.4439 4.8099 -0.9073 45 1 6.1248 6.4114 -0.6927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613847727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:08 Heat of formation + Delta-G solvation = -20.735232 kcal Electronic energy + Delta-G solvation = -28578.238031 eV Core-core repulsion = 24754.078591 eV Total energy + Delta-G solvation = -3824.159440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.68541 -39.04766 -37.15331 -36.08736 -35.85917 -34.07183 -33.53255 -30.76183 -30.43747 -28.92212 -28.05302 -27.56019 -25.24478 -24.80426 -23.43960 -21.14011 -20.92765 -20.00236 -19.45151 -18.63080 -18.27853 -17.35842 -16.47551 -15.77150 -15.70448 -15.46388 -14.90668 -14.83912 -14.39917 -14.25672 -14.01898 -13.70139 -13.35415 -13.30634 -13.14516 -13.09833 -12.95019 -12.56687 -12.17978 -12.02933 -11.85361 -11.79509 -11.36179 -11.21219 -11.13572 -10.90436 -10.65583 -10.57399 -10.46263 -10.36956 -9.93958 -9.91279 -9.39151 -9.14988 -8.89323 -8.83819 -8.48356 -7.54559 -7.09133 -6.80620 -4.68921 1.70792 2.30412 2.60026 2.98686 3.06751 3.10338 3.26492 3.76455 3.83400 4.17966 4.34669 4.46481 4.68232 4.84825 4.87625 5.10286 5.16301 5.26272 5.43558 5.45131 5.54191 5.60069 5.61894 5.71215 5.81278 5.82954 5.88716 5.93579 6.03473 6.20275 6.26557 6.28887 6.38096 6.54023 6.73989 6.75661 6.87141 6.90762 6.95210 7.07650 7.22488 7.36949 7.45830 7.55511 7.76345 7.77405 7.79666 8.14115 8.28582 8.63560 8.93700 9.09489 10.02322 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.004712 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.483240 B = 5940.654637 C = 7034.982517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.175 4.175 3 C -0.148 4.148 4 C -0.099 4.099 5 C 0.152 3.848 6 H 0.094 0.906 7 C 0.064 3.936 8 O -0.561 6.561 9 N -0.712 5.712 10 C 0.595 3.405 11 O -0.564 6.564 12 C -0.021 4.021 13 C -0.169 4.169 14 C -0.128 4.128 15 C -0.081 4.081 16 C -0.160 4.160 17 C -0.136 4.136 18 C -0.081 4.081 19 C 0.069 3.931 20 N -0.260 5.260 21 C -0.455 4.455 22 H 0.101 0.899 23 C 0.036 3.964 24 N -0.808 5.808 25 Si 1.069 2.931 26 H -0.271 1.271 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.374 0.626 39 H 0.420 0.580 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -4.541 -0.176 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.193 4.193 3 C -0.167 4.167 4 C -0.137 4.137 5 C 0.046 3.954 6 H 0.112 0.888 7 C -0.015 4.015 8 O -0.366 6.366 9 N -0.372 5.372 10 C 0.384 3.616 11 O -0.444 6.444 12 C -0.136 4.136 13 C -0.196 4.196 14 C -0.133 4.133 15 C -0.100 4.100 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.101 4.101 19 C -0.045 4.045 20 N 0.076 4.924 21 C -0.582 4.582 22 H 0.119 0.881 23 C -0.182 4.182 24 N -0.432 5.432 25 Si 0.892 3.108 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.220 0.780 39 H 0.266 0.734 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.056 -4.930 -1.518 8.740 hybrid contribution -0.380 0.318 1.453 1.535 sum -7.436 -4.612 -0.066 8.750 Atomic orbital electron populations 1.20840 0.93624 1.01746 1.01756 1.22729 0.96009 0.97770 1.02837 1.22887 1.00119 0.94086 0.99558 1.20966 0.99733 0.93665 0.99309 1.20919 0.81826 0.93262 0.99346 0.88822 1.22644 0.98080 0.94651 0.86160 1.86552 1.75724 1.40107 1.34206 1.46711 1.09129 1.68747 1.12585 1.17259 0.84294 0.75948 0.84053 1.90700 1.72926 1.55902 1.24882 1.20228 0.92595 1.12212 0.88570 1.20388 0.92723 1.08500 0.98007 1.17998 0.94894 1.07306 0.93125 1.20123 0.91835 0.99676 0.98378 1.20321 0.98108 1.05442 0.94042 1.20587 0.96995 1.02882 0.95204 1.20123 0.90952 1.00363 0.98633 1.18416 0.86445 1.05640 0.94044 1.40130 1.05762 1.40612 1.05906 1.20348 1.41330 1.12649 0.83860 0.88133 1.26774 0.93064 0.94611 1.03792 1.70622 1.33775 1.07921 1.30931 0.83510 0.78124 0.75805 0.73394 1.19498 1.19989 1.19878 0.91790 0.91799 0.92537 0.87555 0.87126 0.89988 0.89299 0.93410 0.93078 0.78028 0.73383 0.84943 0.87503 0.87584 0.87246 0.86687 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.65 36.01 0.31 -0.90 16 2 C -0.18 -2.12 10.26 -36.02 -0.37 -2.49 16 3 C -0.15 -2.08 9.22 -36.03 -0.33 -2.41 16 4 C -0.10 -1.38 4.75 -27.88 -0.13 -1.51 16 5 C 0.15 2.45 2.38 -67.93 -0.16 2.29 16 6 H 0.09 1.54 7.61 -51.92 -0.40 1.15 16 7 C 0.06 0.93 6.81 37.16 0.25 1.19 16 8 O -0.56 -8.40 12.79 -35.23 -0.45 -8.85 16 9 N -0.71 -14.08 4.61 -55.04 -0.25 -14.34 16 10 C 0.60 13.52 7.66 -12.76 -0.10 13.42 16 11 O -0.56 -13.38 16.53 5.22 0.09 -13.30 16 12 C -0.02 -0.51 6.77 -82.24 -0.56 -1.07 16 13 C -0.17 -3.95 10.55 -39.02 -0.41 -4.36 16 14 C -0.13 -2.98 6.16 -106.90 -0.66 -3.64 16 15 C -0.08 -1.63 10.06 -39.51 -0.40 -2.03 16 16 C -0.16 -3.00 9.97 -39.95 -0.40 -3.40 16 17 C -0.14 -2.70 10.02 -39.50 -0.40 -3.09 16 18 C -0.08 -1.85 8.94 -39.41 -0.35 -2.20 16 19 C 0.07 1.69 5.61 -83.84 -0.47 1.22 16 20 N -0.26 -6.45 2.52 -56.08 -0.14 -6.59 16 21 C -0.46 -10.92 7.68 -15.01 -0.12 -11.04 16 22 H 0.10 2.31 6.36 -52.48 -0.33 1.97 16 23 C 0.04 0.85 4.14 -17.47 -0.07 0.78 16 24 N -0.81 -20.70 12.49 55.50 0.69 -20.01 16 25 Si 1.07 20.64 29.99 -169.99 -5.10 15.54 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 28 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 29 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.11 1.72 7.99 -52.48 -0.42 1.30 16 34 H 0.08 0.95 5.79 -51.93 -0.30 0.65 16 35 H 0.09 1.35 7.67 -51.93 -0.40 0.95 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.37 3.91 9.12 45.56 0.42 4.33 16 39 H 0.42 8.71 4.35 -40.82 -0.18 8.53 16 40 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 41 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.12 2.68 7.02 -52.48 -0.37 2.31 16 45 H 0.29 7.94 7.51 -40.82 -0.31 7.63 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -29.08 373.50 -9.16 -38.24 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -5.27 Total: 22.93 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -4.36 Total: -19.24 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.30 Total: -40.94 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.36 Total: -22.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.10 Total: 15.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.08 -9.16 -38.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613847727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.500 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds