Wall clock time and date at job start Tue Mar 31 2020 15:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.31002 * 119.99729 * 2 1 4 4 C 1.50697 * 120.00131 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46956 * 125.00476 * 4 3 2 6 6 H 1.09008 * 109.47056 * 303.14014 * 5 4 3 7 7 C 1.52997 * 109.47368 * 183.13861 * 5 4 3 8 8 O 1.42905 * 109.46959 * 304.99738 * 7 5 4 9 9 N 1.46508 * 109.47051 * 63.13619 * 5 4 3 10 10 C 1.34769 * 120.00051 * 201.94599 * 9 5 4 11 11 O 1.21668 * 120.00207 * 4.77930 * 10 9 5 12 12 C 1.46892 * 120.00226 * 184.78347 * 10 9 5 13 13 C 1.36121 * 125.44064 * 173.95931 * 12 10 9 14 14 C 1.41702 * 107.74771 * 180.27996 * 13 12 10 15 15 C 1.40017 * 133.34682 * 179.77853 * 14 13 12 16 16 C 1.36584 * 119.82946 * 179.97438 * 15 14 13 17 17 C 1.38854 * 120.59659 * 359.96334 * 16 15 14 18 18 C 1.37843 * 120.63380 * 0.02562 * 17 16 15 19 19 C 1.39084 * 119.81626 * 0.02562 * 18 17 16 20 20 N 1.37837 * 133.16094 * 180.02562 * 19 18 17 21 21 C 1.36888 * 125.62472 * 359.97005 * 20 19 18 22 22 H 1.08005 * 120.00107 * 137.15272 * 21 20 19 23 23 C 1.39007 * 119.99990 * 317.16021 * 21 20 19 24 24 N 1.31349 * 120.00011 * 334.70760 * 23 21 20 25 25 Si 1.86800 * 119.99881 * 154.71535 * 23 21 20 26 26 H 1.48507 * 109.47172 * 184.98351 * 25 23 21 27 27 H 1.48497 * 109.47238 * 304.98230 * 25 23 21 28 28 H 1.48502 * 109.47309 * 64.98592 * 25 23 21 29 29 H 1.08995 * 109.47082 * 300.00674 * 1 2 3 30 30 H 1.09006 * 109.46741 * 60.00569 * 1 2 3 31 31 H 1.08994 * 109.46646 * 180.02562 * 1 2 3 32 32 H 1.07992 * 119.99890 * 179.97438 * 2 1 3 33 33 H 1.08005 * 119.99767 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47066 * 5.01009 * 4 3 2 35 35 H 1.09000 * 109.47721 * 245.00361 * 4 3 2 36 36 H 1.08994 * 109.47247 * 65.00161 * 7 5 4 37 37 H 1.08996 * 109.47177 * 185.00257 * 7 5 4 38 38 H 0.96704 * 113.99944 * 179.97438 * 8 7 5 39 39 H 0.97002 * 119.99537 * 21.94498 * 9 5 4 40 40 H 1.07997 * 126.12348 * 0.02562 * 13 12 10 41 41 H 1.08003 * 120.08974 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.70028 * 179.97438 * 16 15 14 43 43 H 1.07999 * 119.68143 * 180.02562 * 17 16 15 44 44 H 1.08009 * 120.09088 * 179.97438 * 18 17 16 45 45 H 0.97005 * 119.99882 * 356.41503 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 -0.0006 5 6 1.8697 3.2953 1.1810 6 1 1.7264 2.7411 2.1087 7 6 1.0501 4.5864 1.2264 8 8 1.1450 5.2553 -0.0329 9 7 3.2888 3.6230 1.0221 10 6 4.0248 3.9691 2.0967 11 8 3.5347 3.9255 3.2095 12 6 5.4188 4.3990 1.9246 13 6 6.2236 4.8813 2.9108 14 6 7.4811 5.1850 2.3324 15 6 8.6755 5.7035 2.8470 16 6 9.7471 5.8897 2.0207 17 6 9.6640 5.5684 0.6724 18 6 8.4989 5.0564 0.1428 19 6 7.3941 4.8590 0.9643 20 7 6.1235 4.3760 0.7358 21 6 5.6381 3.9481 -0.4705 22 1 5.0442 3.0476 -0.5250 23 6 5.9098 4.6724 -1.6255 24 7 6.1718 5.9572 -1.5486 25 14 5.9020 3.8185 -3.2869 26 1 6.3364 4.7746 -4.3369 27 1 6.8337 2.6627 -3.2538 28 1 4.5296 3.3395 -3.5909 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 2.0470 -0.9352 0.0004 33 1 3.2421 1.1345 -0.0004 34 1 0.3402 2.2424 0.0888 35 1 1.6032 2.9713 -0.9320 36 1 0.0069 4.3475 1.4332 37 1 1.4370 5.2349 2.0123 38 1 0.6481 6.0838 -0.0766 39 1 3.6985 3.5908 0.1435 40 1 5.9511 5.0130 3.9475 41 1 8.7495 5.9557 3.8945 42 1 10.6672 6.2902 2.4197 43 1 10.5205 5.7212 0.0325 44 1 8.4439 4.8099 -0.9073 45 1 6.1248 6.4114 -0.6927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613847727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:04 Heat of formation + Delta-G solvation = -38.052002 kcal Electronic energy + Delta-G solvation = -28578.988942 eV Core-core repulsion = 24754.078591 eV Total energy + Delta-G solvation = -3824.910352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -42.42732 -40.61437 -38.52719 -37.76767 -36.94727 -35.70610 -35.08111 -32.48160 -31.85887 -30.57268 -29.63594 -28.66177 -26.63406 -26.26855 -25.06111 -22.81650 -22.42936 -21.56800 -21.18747 -20.26751 -19.43079 -18.65364 -18.03220 -17.48473 -17.19799 -16.76832 -16.44014 -16.33084 -15.89481 -15.75310 -15.57700 -15.04137 -14.91425 -14.83057 -14.67894 -14.31192 -14.22237 -13.98232 -13.82850 -13.51217 -13.27756 -12.85255 -12.70268 -12.50757 -12.45710 -12.34072 -12.17322 -12.14842 -11.97667 -11.69576 -11.58385 -11.24902 -10.97628 -10.91027 -10.59476 -10.11384 -9.85710 -9.38906 -8.86787 -8.56263 -6.57086 -0.01334 0.94627 1.25615 1.27556 1.47067 1.53231 1.74029 2.15297 2.25172 2.41144 2.61219 2.88833 3.18077 3.35518 3.73031 3.88954 4.01279 4.08991 4.13022 4.28753 4.31457 4.32940 4.40515 4.43199 4.52156 4.60249 4.65392 4.68652 4.72714 4.85171 4.85853 5.04223 5.08968 5.12740 5.15112 5.18729 5.25934 5.40933 5.51735 5.65725 5.72632 5.73509 5.81678 5.91903 6.03615 6.06316 6.41846 6.56030 6.82797 6.84051 7.20781 7.28208 8.09750 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.004712 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.483240 B = 5940.654637 C = 7034.982517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.154 4.154 3 C -0.182 4.182 4 C -0.084 4.084 5 C 0.142 3.858 6 H 0.090 0.910 7 C 0.069 3.931 8 O -0.580 6.580 9 N -0.704 5.704 10 C 0.589 3.411 11 O -0.583 6.583 12 C -0.049 4.049 13 C -0.179 4.179 14 C -0.149 4.149 15 C -0.085 4.085 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.114 4.114 19 C 0.045 3.955 20 N -0.276 5.276 21 C -0.465 4.465 22 H 0.103 0.897 23 C 0.008 3.992 24 N -0.830 5.830 25 Si 1.112 2.888 26 H -0.273 1.273 27 H -0.264 1.264 28 H -0.254 1.254 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.393 0.607 39 H 0.415 0.585 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.100 0.900 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -5.184 -0.451 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.172 4.172 3 C -0.200 4.200 4 C -0.121 4.121 5 C 0.038 3.962 6 H 0.108 0.892 7 C -0.010 4.010 8 O -0.388 6.388 9 N -0.361 5.361 10 C 0.378 3.622 11 O -0.466 6.466 12 C -0.164 4.164 13 C -0.207 4.207 14 C -0.153 4.153 15 C -0.103 4.103 16 C -0.170 4.170 17 C -0.141 4.141 18 C -0.134 4.134 19 C -0.069 4.069 20 N 0.059 4.941 21 C -0.591 4.591 22 H 0.120 0.880 23 C -0.205 4.205 24 N -0.455 5.455 25 Si 0.928 3.072 26 H -0.197 1.197 27 H -0.189 1.189 28 H -0.178 1.178 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.242 0.758 39 H 0.260 0.740 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.170 0.830 43 H 0.161 0.839 44 H 0.118 0.882 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.229 -5.575 -1.792 9.303 hybrid contribution -0.261 0.499 1.630 1.724 sum -7.489 -5.076 -0.162 9.049 Atomic orbital electron populations 1.20921 0.91483 1.03266 1.02493 1.23033 0.97638 0.97206 0.99337 1.22750 0.99034 0.95109 1.03121 1.20858 1.01202 0.92777 0.97274 1.21262 0.79874 0.94733 1.00375 0.89238 1.22573 0.99815 0.93269 0.85329 1.86504 1.76622 1.41449 1.34184 1.46713 1.10663 1.67336 1.11379 1.17250 0.84200 0.76281 0.84499 1.90659 1.73216 1.57240 1.25446 1.20658 0.93678 1.13037 0.89004 1.20641 0.93138 1.08475 0.98405 1.18384 0.96007 1.08117 0.92825 1.20557 0.90870 0.98624 1.00275 1.20821 0.99276 1.03686 0.93206 1.21076 0.96618 1.00037 0.96384 1.20223 0.92065 1.03014 0.98082 1.18877 0.86821 1.05991 0.95183 1.40267 1.06236 1.41529 1.06062 1.20556 1.41733 1.12648 0.84169 0.88010 1.28066 0.91571 0.94266 1.06567 1.70747 1.36611 1.08908 1.29258 0.83018 0.79357 0.75140 0.69649 1.19748 1.18866 1.17798 0.91000 0.90875 0.90785 0.86878 0.89787 0.87022 0.90821 0.89257 0.95572 0.75827 0.74017 0.83956 0.84436 0.83019 0.83895 0.88175 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.65 71.24 0.62 -1.46 16 2 C -0.15 -3.48 10.26 25.65 0.26 -3.22 16 3 C -0.18 -5.10 9.22 25.64 0.24 -4.86 16 4 C -0.08 -2.27 4.75 29.85 0.14 -2.13 16 5 C 0.14 4.62 2.38 44.99 0.11 4.72 16 6 H 0.09 2.98 7.61 -2.38 -0.02 2.97 16 7 C 0.07 1.99 6.81 71.98 0.49 2.48 16 8 O -0.58 -17.15 12.79 -148.98 -1.91 -19.06 16 9 N -0.70 -29.12 4.61 -446.29 -2.06 -31.17 16 10 C 0.59 28.11 7.66 86.51 0.66 28.77 16 11 O -0.58 -28.83 16.53 -4.25 -0.07 -28.90 16 12 C -0.05 -2.51 6.77 39.91 0.27 -2.24 16 13 C -0.18 -8.68 10.55 22.63 0.24 -8.44 16 14 C -0.15 -6.99 6.16 -21.34 -0.13 -7.12 16 15 C -0.08 -3.24 10.06 22.31 0.22 -3.02 16 16 C -0.15 -5.17 9.97 22.03 0.22 -4.95 16 17 C -0.12 -4.56 10.02 22.32 0.22 -4.33 16 18 C -0.11 -5.27 8.94 22.38 0.20 -5.07 16 19 C 0.05 2.28 5.61 39.06 0.22 2.50 16 20 N -0.28 -14.35 2.52 -331.35 -0.83 -15.19 16 21 C -0.46 -23.33 7.68 84.09 0.65 -22.69 16 22 H 0.10 4.93 6.36 -2.91 -0.02 4.91 16 23 C 0.01 0.37 4.14 84.95 0.35 0.73 16 24 N -0.83 -44.21 12.49 21.67 0.27 -43.94 16 25 Si 1.11 42.07 29.99 68.60 2.06 44.13 16 26 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 27 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 28 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 29 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 30 H 0.07 1.13 7.85 -2.38 -0.02 1.11 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.08 2.77 7.99 -2.91 -0.02 2.74 16 34 H 0.11 2.31 5.79 -2.39 -0.01 2.30 16 35 H 0.07 2.22 7.67 -2.39 -0.02 2.20 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.03 0.88 8.11 -2.39 -0.02 0.86 16 38 H 0.39 7.93 9.12 -74.05 -0.68 7.25 16 39 H 0.41 18.11 4.35 -92.71 -0.40 17.71 16 40 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 42 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 44 H 0.10 4.83 7.02 -2.91 -0.02 4.81 16 45 H 0.27 15.43 7.51 -92.70 -0.70 14.74 16 Total: -1.00 -66.71 373.50 2.46 -64.25 By element: Atomic # 1 Polarization: 60.20 SS G_CDS: 0.02 Total: 60.22 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.98 Total: -30.34 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -2.62 Total: -90.30 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -1.98 Total: -47.95 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.06 Total: 44.13 kcal Total: -66.71 2.46 -64.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613847727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.197 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds