Wall clock time and date at job start Tue Mar 31 2020 15:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46890 * 2 1 4 4 O 1.42895 * 109.47094 * 119.99572 * 2 1 3 5 5 C 1.52991 * 109.47340 * 240.00305 * 2 1 3 6 6 C 1.53950 * 113.73826 * 276.67590 * 5 2 1 7 7 N 1.47583 * 86.11172 * 222.04318 * 6 5 2 8 8 C 1.34781 * 134.48801 * 204.63617 * 7 6 5 9 9 O 1.21667 * 119.99652 * 174.91574 * 8 7 6 10 10 C 1.46887 * 120.00390 * 354.91249 * 8 7 6 11 11 C 1.36125 * 125.43633 * 354.36764 * 10 8 7 12 12 C 1.41692 * 107.74929 * 179.97438 * 11 10 8 13 13 C 1.40023 * 133.35485 * 180.02562 * 12 11 10 14 14 C 1.36569 * 119.83481 * 179.97438 * 13 12 11 15 15 C 1.38851 * 120.60085 * 359.97438 * 14 13 12 16 16 C 1.37847 * 120.63477 * 0.04167 * 15 14 13 17 17 C 1.39085 * 119.80951 * 359.95625 * 16 15 14 18 18 N 1.37837 * 133.16105 * 180.35761 * 17 16 15 19 19 C 1.36897 * 125.61990 * 359.91076 * 18 17 16 20 20 H 1.07999 * 120.00217 * 220.72328 * 19 18 17 21 21 C 1.39009 * 119.99837 * 40.72445 * 19 18 17 22 22 N 1.31347 * 120.00211 * 15.19552 * 21 19 18 23 23 Si 1.86800 * 119.99843 * 195.19515 * 21 19 18 24 24 H 1.48497 * 109.47011 * 60.00344 * 23 21 19 25 25 H 1.48504 * 109.46900 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47471 * 300.00419 * 23 21 19 27 27 C 1.47578 * 91.01722 * 24.64173 * 7 6 5 28 28 H 1.09000 * 109.47058 * 299.99783 * 1 2 3 29 29 H 1.08998 * 109.47353 * 59.99419 * 1 2 3 30 30 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46907 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47077 * 300.00461 * 3 2 1 33 33 H 1.09000 * 109.47093 * 60.00238 * 3 2 1 34 34 H 0.96703 * 113.99702 * 60.00478 * 4 2 1 35 35 H 1.09003 * 112.94501 * 48.40470 * 5 2 1 36 36 H 1.08999 * 113.76797 * 336.34394 * 6 5 2 37 37 H 1.09002 * 113.77032 * 107.74946 * 6 5 2 38 38 H 1.08004 * 126.12218 * 359.97129 * 11 10 8 39 39 H 1.08001 * 120.08095 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.70018 * 180.02562 * 14 13 12 41 41 H 1.08006 * 119.68474 * 180.02562 * 15 14 13 42 42 H 1.07998 * 120.09539 * 179.97438 * 16 15 14 43 43 H 0.96995 * 120.00379 * 184.92087 * 22 21 19 44 44 H 1.09005 * 113.76567 * 221.05551 * 27 7 6 45 45 H 1.09000 * 113.77094 * 89.66001 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7211 -1.2492 6 6 2.0922 -2.2528 -1.1027 7 7 3.3941 -2.1739 -1.7933 8 6 4.1244 -3.0318 -2.5330 9 8 5.1504 -2.6540 -3.0667 10 6 3.6817 -4.4230 -2.6948 11 6 2.6177 -4.9912 -2.0638 12 6 2.5312 -6.3392 -2.4916 13 6 1.6566 -7.3897 -2.1882 14 6 1.8310 -8.6102 -2.7757 15 6 2.8692 -8.8206 -3.6734 16 6 3.7433 -7.8022 -3.9877 17 6 3.5857 -6.5504 -3.4022 18 7 4.2752 -5.3624 -3.5167 19 6 5.3699 -5.1492 -4.3106 20 1 6.1973 -4.5605 -3.9428 21 6 5.4165 -5.6904 -5.5901 22 7 4.3191 -6.1436 -6.1520 23 14 7.0399 -5.7733 -6.5106 24 1 8.0055 -6.5953 -5.7380 25 1 6.8219 -6.3894 -7.8441 26 1 7.5828 -4.4017 -6.6812 27 6 3.5752 -0.7784 -1.3485 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.7210 -1.5951 1.2329 35 1 1.5534 -0.3824 -2.1639 36 1 2.1627 -2.5931 -0.0697 37 1 1.3236 -2.7750 -1.6726 38 1 1.9578 -4.5020 -1.3626 39 1 0.8460 -7.2352 -1.4914 40 1 1.1549 -9.4189 -2.5404 41 1 2.9932 -9.7917 -4.1297 42 1 4.5480 -7.9756 -4.6868 43 1 4.3626 -6.5857 -7.0142 44 1 3.9907 -0.1236 -2.1145 45 1 4.0814 -0.6858 -0.3876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614904226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:00 Heat of formation + Delta-G solvation = 13.070149 kcal Electronic energy + Delta-G solvation = -28313.752171 eV Core-core repulsion = 24491.058642 eV Total energy + Delta-G solvation = -3822.693529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.76200 -40.07924 -37.94060 -36.29828 -35.66076 -33.62114 -32.59461 -30.76990 -29.43322 -28.95496 -27.93431 -27.44341 -25.79981 -24.75689 -23.55542 -21.92687 -20.79976 -20.15970 -19.70618 -18.84085 -17.84170 -17.17495 -16.18947 -15.92354 -15.65094 -15.30202 -14.92901 -14.76979 -14.50617 -14.13973 -13.63731 -13.47367 -13.22585 -12.98028 -12.88957 -12.76772 -12.53568 -12.45526 -12.26540 -12.21062 -11.98113 -11.86130 -11.82801 -11.61314 -11.28317 -11.17425 -11.11939 -10.74729 -10.60128 -10.44657 -10.20439 -10.12451 -9.79195 -9.14826 -9.05959 -8.60738 -8.31908 -7.14911 -6.81857 -6.50812 -4.40902 1.84075 2.78470 3.01712 3.06996 3.08920 3.13013 3.18211 3.88849 3.99133 4.15062 4.23348 4.51756 4.63040 4.72781 4.79740 4.95564 5.04759 5.10899 5.21448 5.36220 5.38833 5.47933 5.54569 5.55697 5.63242 5.73858 5.75403 5.81598 5.88778 5.96647 6.01921 6.08223 6.18293 6.24691 6.35014 6.56561 6.73265 6.88970 7.04159 7.10826 7.21301 7.46613 7.50358 7.59048 7.71099 7.94896 8.03827 8.14751 8.47397 8.74823 8.97981 9.36004 10.27734 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.003955 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.260194 B = 7078.417332 C = 8769.936121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.137 3.863 3 C -0.138 4.138 4 O -0.558 6.558 5 C -0.153 4.153 6 C 0.106 3.894 7 N -0.641 5.641 8 C 0.610 3.390 9 O -0.531 6.531 10 C -0.018 4.018 11 C -0.210 4.210 12 C -0.125 4.125 13 C -0.093 4.093 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.048 4.048 17 C 0.087 3.913 18 N -0.231 5.231 19 C -0.335 4.335 20 H 0.116 0.884 21 C 0.052 3.948 22 N -0.826 5.826 23 Si 0.930 3.070 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.264 1.264 27 C 0.122 3.878 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.376 0.624 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.281 0.719 44 H 0.077 0.923 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 7.739 9.543 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.095 3.905 3 C -0.196 4.196 4 O -0.366 6.366 5 C -0.173 4.173 6 C -0.017 4.017 7 N -0.378 5.378 8 C 0.404 3.596 9 O -0.407 6.407 10 C -0.135 4.135 11 C -0.237 4.237 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.175 4.175 15 C -0.175 4.175 16 C -0.067 4.067 17 C -0.027 4.027 18 N 0.109 4.891 19 C -0.464 4.464 20 H 0.134 0.866 21 C -0.160 4.160 22 N -0.455 5.455 23 Si 0.754 3.246 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.189 1.189 27 C 0.000 4.000 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.766 8.437 8.745 13.908 hybrid contribution 0.260 -0.693 -0.814 1.100 sum -6.506 7.744 7.931 12.853 Atomic orbital electron populations 1.22468 0.95410 1.02803 1.02799 1.21057 0.92626 0.92824 0.83963 1.21740 1.02235 0.93213 1.02374 1.86574 1.77342 1.29198 1.43496 1.23973 0.97289 0.96113 0.99901 1.23249 0.86352 0.94616 0.97461 1.49437 1.22096 1.14056 1.52241 1.16896 0.81959 0.83288 0.77500 1.90774 1.24453 1.77998 1.47491 1.19539 0.98489 0.89894 1.05556 1.20476 1.00719 0.94475 1.08065 1.17959 0.98730 0.94423 1.01818 1.20001 0.98402 0.92309 1.00465 1.20261 0.99702 0.96675 1.00816 1.20539 0.97337 0.98011 1.01582 1.20098 0.99155 0.90140 0.97352 1.18172 0.96557 0.87656 1.00336 1.39921 1.18904 1.04227 1.26024 1.20018 0.95294 1.36098 0.94964 0.86609 1.25672 0.98911 0.95468 0.95981 1.69994 1.26984 1.31719 1.16829 0.85934 0.80828 0.79627 0.78232 1.18967 1.20230 1.18895 1.23036 0.94738 0.82504 0.99729 0.91786 0.91430 0.91977 0.91616 0.91067 0.91880 0.77457 0.87341 0.90015 0.89238 0.85481 0.87953 0.87994 0.87709 0.86939 0.90867 0.90435 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 8.81 37.16 0.33 -0.91 16 2 C 0.14 1.15 0.99 -90.62 -0.09 1.06 16 3 C -0.14 -1.09 8.65 37.16 0.32 -0.77 16 4 O -0.56 -5.29 12.26 -35.23 -0.43 -5.73 16 5 C -0.15 -1.58 3.25 -89.70 -0.29 -1.87 16 6 C 0.11 1.30 5.98 -2.97 -0.02 1.28 16 7 N -0.64 -11.04 3.60 -179.85 -0.65 -11.68 16 8 C 0.61 14.12 8.00 -12.76 -0.10 14.02 16 9 O -0.53 -14.06 15.72 5.22 0.08 -13.98 16 10 C -0.02 -0.43 6.76 -82.25 -0.56 -0.99 16 11 C -0.21 -4.56 9.83 -39.02 -0.38 -4.94 16 12 C -0.12 -2.90 6.16 -106.89 -0.66 -3.56 16 13 C -0.09 -1.86 10.06 -39.52 -0.40 -2.26 16 14 C -0.16 -3.00 9.97 -39.96 -0.40 -3.39 16 15 C -0.15 -3.19 10.02 -39.50 -0.40 -3.59 16 16 C -0.05 -1.16 8.57 -39.41 -0.34 -1.50 16 17 C 0.09 2.27 6.06 -83.84 -0.51 1.76 16 18 N -0.23 -6.29 2.82 -56.08 -0.16 -6.45 16 19 C -0.34 -9.37 8.81 -15.00 -0.13 -9.50 16 20 H 0.12 3.31 6.89 -52.49 -0.36 2.95 16 21 C 0.05 1.36 4.52 -17.47 -0.08 1.28 16 22 N -0.83 -22.27 10.95 55.50 0.61 -21.66 16 23 Si 0.93 20.19 29.58 -169.99 -5.03 15.17 16 24 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 27 C 0.12 1.64 7.35 -2.98 -0.02 1.62 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.56 7.43 -51.93 -0.39 0.17 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.38 2.68 6.81 45.56 0.31 2.99 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.82 5.88 -51.93 -0.31 0.52 16 37 H 0.09 1.11 6.95 -51.93 -0.36 0.75 16 38 H 0.13 2.22 5.34 -52.48 -0.28 1.94 16 39 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.11 2.79 6.57 -52.49 -0.35 2.45 16 43 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.11 7.76 -51.93 -0.40 0.71 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -33.33 363.18 -9.32 -42.65 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.50 Total: 8.49 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.72 Total: -12.27 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.20 Total: -39.80 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.35 Total: -19.70 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.33 -9.32 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614904226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.719 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds