Wall clock time and date at job start Tue Mar 31 2020 14:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 N 1.46491 * 110.45329 * 52.73969 * 3 2 1 5 5 C 1.34778 * 120.00506 * 67.01633 * 4 3 2 6 6 O 1.21667 * 119.99275 * 355.36976 * 5 4 3 7 7 C 1.46885 * 120.00530 * 175.37853 * 5 4 3 8 8 C 1.36118 * 125.43913 * 186.41253 * 7 5 4 9 9 C 1.41701 * 107.74880 * 179.84654 * 8 7 5 10 10 C 1.40017 * 133.35118 * 180.10125 * 9 8 7 11 11 C 1.36579 * 119.83261 * 180.27458 * 10 9 8 12 12 C 1.38858 * 120.59772 * 0.03807 * 11 10 9 13 13 C 1.37843 * 120.63405 * 0.02562 * 12 11 10 14 14 C 1.39085 * 119.81286 * 359.97438 * 13 12 11 15 15 N 1.37837 * 133.15982 * 180.02562 * 14 13 12 16 16 C 1.36893 * 125.62332 * 359.94309 * 15 14 13 17 17 H 1.07992 * 119.99944 * 224.77803 * 16 15 14 18 18 C 1.39016 * 119.99647 * 44.77318 * 16 15 14 19 19 N 1.31344 * 120.00083 * 5.71873 * 18 16 15 20 20 Si 1.86791 * 119.99725 * 185.71318 * 18 16 15 21 21 H 1.48496 * 109.47298 * 64.99960 * 20 18 16 22 22 H 1.48503 * 109.47057 * 185.00346 * 20 18 16 23 23 H 1.48502 * 109.47223 * 305.00133 * 20 18 16 24 24 C 1.54508 * 110.50924 * 175.34238 * 3 2 1 25 25 C 1.54484 * 104.06071 * 118.64251 * 24 3 2 26 26 O 1.44431 * 104.80255 * 23.98184 * 25 24 3 27 27 C 1.44429 * 105.27186 * 319.48160 * 26 25 24 28 28 H 1.08993 * 109.46845 * 304.83725 * 1 2 3 29 29 H 1.09000 * 109.46826 * 64.83794 * 1 2 3 30 30 H 1.08996 * 109.46582 * 184.83648 * 1 2 3 31 31 H 1.09003 * 109.46812 * 239.99822 * 2 1 3 32 32 H 1.09004 * 109.47184 * 120.00394 * 2 1 3 33 33 H 0.97009 * 119.99826 * 247.00628 * 4 3 2 34 34 H 1.07997 * 126.12341 * 359.97438 * 8 7 5 35 35 H 1.08001 * 120.08935 * 0.29593 * 10 9 8 36 36 H 1.08005 * 119.70215 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.67821 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.09314 * 179.97438 * 13 12 11 39 39 H 0.96995 * 120.00111 * 185.00076 * 19 18 16 40 40 H 1.08997 * 110.51174 * 0.02562 * 24 3 2 41 41 H 1.08997 * 110.51095 * 237.28917 * 24 3 2 42 42 H 1.08997 * 110.37579 * 265.15054 * 25 24 3 43 43 H 1.09001 * 110.46179 * 142.85497 * 25 24 3 44 44 H 1.08998 * 110.37067 * 159.34252 * 27 26 25 45 45 H 1.08994 * 110.37349 * 281.68663 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4272 2.2021 1.0924 5 6 1.7183 1.8961 2.3723 6 8 2.4230 0.9366 2.6231 7 6 1.1847 2.7209 3.4644 8 6 1.5044 2.5901 4.7810 9 6 0.7812 3.5732 5.5009 10 6 0.7094 3.9124 6.8574 11 6 -0.1040 4.9329 7.2605 12 6 -0.8631 5.6388 6.3365 13 6 -0.8102 5.3226 4.9959 14 6 0.0107 4.2873 4.5615 15 7 0.2720 3.7488 3.3199 16 6 -0.2804 4.1643 2.1383 17 1 -0.6465 3.4375 1.4283 18 6 -0.3703 5.5218 1.8525 19 7 0.1745 6.4009 2.6621 20 14 -1.2657 6.0955 0.3169 21 1 -2.7062 5.7519 0.4263 22 1 -1.1168 7.5665 0.1775 23 1 -0.6859 5.4243 -0.8742 24 6 3.5804 1.4721 0.1175 25 6 4.0430 2.1616 -1.1852 26 8 2.9087 2.9489 -1.6089 27 6 1.7542 2.1176 -1.3598 28 1 -0.3633 0.5870 0.8434 29 1 -0.3633 0.4370 -0.9302 30 1 -0.3632 -1.0240 0.0866 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.8119 2.9256 0.8946 34 1 2.1884 1.8678 5.2013 35 1 1.2959 3.3688 7.5833 36 1 -0.1574 5.1931 8.3074 37 1 -1.5016 6.4428 6.6717 38 1 -1.4046 5.8771 4.2849 39 1 0.0503 7.3495 2.5025 40 1 3.9785 0.4591 0.1751 41 1 3.8860 2.0540 0.9870 42 1 4.2915 1.4168 -1.9412 43 1 4.9008 2.8057 -0.9916 44 1 0.8533 2.7280 -1.2984 45 1 1.6519 1.3660 -2.1425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616689984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:56 Heat of formation + Delta-G solvation = -36.451793 kcal Electronic energy + Delta-G solvation = -29294.127931 eV Core-core repulsion = 25469.286969 eV Total energy + Delta-G solvation = -3824.840961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.31348 -41.32483 -39.43023 -37.59554 -36.36089 -35.36592 -33.38751 -32.43578 -31.67810 -30.65030 -29.79551 -28.92518 -26.84181 -25.11892 -24.67935 -23.27626 -22.73937 -22.11022 -21.06071 -20.45305 -19.87746 -18.08187 -17.70692 -17.38653 -16.79495 -16.72851 -16.48387 -16.35294 -15.96811 -15.75427 -15.39576 -15.06401 -14.73008 -14.61125 -14.57546 -14.36927 -14.15836 -13.68690 -13.60586 -13.43886 -13.11664 -13.03027 -12.84853 -12.70131 -12.55488 -12.34291 -12.23061 -12.15398 -11.91810 -11.81132 -11.67216 -11.46387 -11.01687 -10.90926 -10.72875 -10.38411 -10.00760 -8.96970 -8.61429 -8.28235 -6.55121 0.12989 1.10800 1.35646 1.38750 1.45241 1.47351 2.07593 2.24991 2.51156 2.80110 2.91414 2.91966 3.36008 3.46808 3.73757 3.86780 4.01329 4.10949 4.22784 4.24553 4.37300 4.42651 4.43142 4.50187 4.55408 4.65810 4.73819 4.75762 4.81146 4.85038 4.88050 5.00582 5.03368 5.05499 5.06459 5.19585 5.23975 5.35382 5.36674 5.44961 5.61353 5.73703 5.79591 5.90012 5.96116 6.20438 6.24924 6.56228 6.60006 6.91571 7.31531 7.48597 8.38461 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.005359 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.685745 B = 5224.021191 C = 6591.334718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.133 3.867 4 N -0.707 5.707 5 C 0.597 3.403 6 O -0.568 6.568 7 C -0.045 4.045 8 C -0.180 4.180 9 C -0.156 4.156 10 C -0.093 4.093 11 C -0.153 4.153 12 C -0.138 4.138 13 C -0.081 4.081 14 C 0.077 3.923 15 N -0.273 5.273 16 C -0.391 4.391 17 H 0.113 0.887 18 C 0.024 3.976 19 N -0.851 5.851 20 Si 0.986 3.014 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.250 1.250 24 C -0.150 4.150 25 C 0.046 3.954 26 O -0.396 6.396 27 C 0.048 3.952 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.412 0.588 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -5.754 -6.690 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.047 3.953 4 N -0.365 5.365 5 C 0.386 3.614 6 O -0.449 6.449 7 C -0.159 4.159 8 C -0.209 4.209 9 C -0.161 4.161 10 C -0.112 4.112 11 C -0.172 4.172 12 C -0.158 4.158 13 C -0.101 4.101 14 C -0.038 4.038 15 N 0.062 4.938 16 C -0.517 4.517 17 H 0.130 0.870 18 C -0.186 4.186 19 N -0.480 5.480 20 Si 0.806 3.194 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.173 1.173 24 C -0.189 4.189 25 C -0.030 4.030 26 O -0.315 6.315 27 C -0.029 4.029 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.257 0.743 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.163 0.837 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.495 -5.872 -7.045 9.185 hybrid contribution -0.452 0.837 -0.186 0.969 sum 0.043 -5.035 -7.231 8.811 Atomic orbital electron populations 1.21730 0.95165 1.02051 1.01694 1.21848 0.96741 0.93533 1.03523 1.21971 0.92973 0.93144 0.87173 1.46755 1.48176 1.37201 1.04337 1.17082 0.79384 0.82518 0.82411 1.90655 1.40595 1.28962 1.84718 1.20643 1.00508 0.99179 0.95605 1.20601 1.05962 1.03010 0.91278 1.18434 1.03095 0.99892 0.94678 1.20461 0.99733 0.98398 0.92596 1.20734 0.98942 0.97481 1.00026 1.21027 1.01737 1.01265 0.91762 1.20165 0.98960 0.95355 0.95616 1.18725 1.01283 0.99188 0.84574 1.40113 1.26610 1.22135 1.04952 1.19781 1.43060 0.93031 0.95856 0.86964 1.26526 0.95097 0.95484 1.01531 1.70028 1.36370 1.03373 1.38267 0.85092 0.79073 0.77963 0.77285 1.18116 1.20092 1.17317 1.23244 0.94481 1.02592 0.98541 1.23606 0.89601 0.95299 0.94479 1.89139 1.16429 1.40730 1.85190 1.23828 0.89942 0.95012 0.94132 0.95303 0.90966 0.91473 0.87930 0.92323 0.74348 0.84239 0.84989 0.83660 0.84567 0.88084 0.90503 0.88423 0.93548 0.88806 0.88905 0.89194 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.59 71.98 0.69 -3.07 16 2 C -0.12 -3.07 4.56 30.60 0.14 -2.93 16 3 C 0.13 4.03 0.66 4.62 0.00 4.04 16 4 N -0.71 -27.46 3.96 -422.06 -1.67 -29.14 16 5 C 0.60 27.09 6.87 86.51 0.59 27.69 16 6 O -0.57 -26.39 14.28 -4.24 -0.06 -26.45 16 7 C -0.04 -2.24 6.77 39.91 0.27 -1.97 16 8 C -0.18 -8.78 10.55 22.63 0.24 -8.54 16 9 C -0.16 -7.52 6.16 -21.34 -0.13 -7.65 16 10 C -0.09 -3.72 10.06 22.31 0.22 -3.50 16 11 C -0.15 -5.51 9.97 22.03 0.22 -5.29 16 12 C -0.14 -5.38 10.02 22.32 0.22 -5.16 16 13 C -0.08 -3.82 8.54 22.38 0.19 -3.63 16 14 C 0.08 3.93 6.03 39.06 0.24 4.17 16 15 N -0.27 -14.08 2.81 -331.34 -0.93 -15.01 16 16 C -0.39 -18.93 7.72 84.09 0.65 -18.29 16 17 H 0.11 5.04 6.39 -2.91 -0.02 5.02 16 18 C 0.02 1.14 4.85 84.95 0.41 1.56 16 19 N -0.85 -43.22 10.61 21.67 0.23 -42.99 16 20 Si 0.99 35.94 29.56 68.60 2.03 37.97 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 22 H -0.28 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 24 C -0.15 -4.46 5.47 31.61 0.17 -4.28 16 25 C 0.05 1.14 7.63 72.49 0.55 1.70 16 26 O -0.40 -11.94 11.65 -148.98 -1.74 -13.68 16 27 C 0.05 1.24 6.27 72.49 0.45 1.69 16 28 H 0.03 0.90 7.30 -2.39 -0.02 0.88 16 29 H 0.07 1.49 7.76 -2.39 -0.02 1.47 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.92 7.97 -2.39 -0.02 1.90 16 32 H 0.06 1.85 6.80 -2.38 -0.02 1.83 16 33 H 0.41 16.71 4.14 -92.70 -0.38 16.33 16 34 H 0.14 6.27 8.06 -2.91 -0.02 6.25 16 35 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.10 4.92 6.66 -2.91 -0.02 4.90 16 39 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 40 H 0.10 2.55 7.73 -2.39 -0.02 2.53 16 41 H 0.05 1.73 7.04 -2.39 -0.02 1.71 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.09 2.43 7.75 -2.39 -0.02 2.41 16 45 H 0.11 2.04 7.75 -2.39 -0.02 2.02 16 Total: -1.00 -63.85 358.18 3.63 -60.22 By element: Atomic # 1 Polarization: 51.91 SS G_CDS: 0.63 Total: 52.54 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 5.14 Total: -23.47 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.37 Total: -87.14 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.80 Total: -40.12 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -63.85 3.63 -60.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616689984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.769 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds