Wall clock time and date at job start Tue Mar 31 2020 16:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46818 * 2 1 4 4 C 1.52995 * 109.47010 * 239.99990 * 2 1 3 5 5 C 1.50697 * 109.46744 * 119.99789 * 2 1 3 6 6 O 1.20759 * 120.00804 * 0.02562 * 5 2 1 7 7 C 1.50706 * 119.99422 * 179.97438 * 5 2 1 8 8 N 1.46502 * 109.46942 * 185.73534 * 7 5 2 9 9 C 1.34778 * 119.99999 * 185.54088 * 8 7 5 10 10 O 1.21667 * 120.00241 * 6.83145 * 9 8 7 11 11 C 1.46885 * 119.99829 * 186.83361 * 9 8 7 12 12 C 1.36132 * 125.43650 * 173.57423 * 11 9 8 13 13 C 1.41699 * 107.74826 * 180.24325 * 12 11 9 14 14 C 1.40020 * 133.35088 * 179.82296 * 13 12 11 15 15 C 1.36578 * 119.83300 * 179.97438 * 14 13 12 16 16 C 1.38862 * 120.59978 * 359.97438 * 15 14 13 17 17 C 1.37844 * 120.63034 * 359.97438 * 16 15 14 18 18 C 1.39086 * 119.81817 * 0.02562 * 17 16 15 19 19 N 1.37836 * 133.16494 * 180.02562 * 18 17 16 20 20 C 1.36883 * 125.62099 * 359.93757 * 19 18 17 21 21 H 1.07997 * 120.00266 * 133.48973 * 20 19 18 22 22 C 1.39013 * 119.99989 * 313.48252 * 20 19 18 23 23 N 1.31354 * 120.00042 * 351.44451 * 22 20 19 24 24 Si 1.86795 * 120.00254 * 171.16214 * 22 20 19 25 25 H 1.48505 * 109.47566 * 275.33835 * 24 22 20 26 26 H 1.48504 * 109.47142 * 35.34013 * 24 22 20 27 27 H 1.48507 * 109.47473 * 155.33825 * 24 22 20 28 28 H 1.09001 * 109.46752 * 300.00328 * 1 2 3 29 29 H 1.09003 * 109.46934 * 60.00098 * 1 2 3 30 30 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46432 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46907 * 299.99996 * 3 2 1 33 33 H 1.08994 * 109.47087 * 60.00223 * 3 2 1 34 34 H 1.09002 * 109.47378 * 299.99727 * 4 2 1 35 35 H 1.09003 * 109.47344 * 60.00163 * 4 2 1 36 36 H 1.09000 * 109.46676 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47286 * 65.73951 * 7 5 2 38 38 H 1.08999 * 109.47328 * 305.73011 * 7 5 2 39 39 H 0.97002 * 119.99777 * 5.53763 * 8 7 5 40 40 H 1.08000 * 126.12320 * 0.02562 * 12 11 9 41 41 H 1.07994 * 120.08386 * 359.93705 * 14 13 12 42 42 H 1.08000 * 119.70025 * 180.02562 * 15 14 13 43 43 H 1.07991 * 119.68529 * 180.02562 * 16 15 14 44 44 H 1.08005 * 120.09218 * 180.02562 * 17 16 15 45 45 H 0.96993 * 120.00333 * 174.75681 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2476 -1.1697 2.0252 7 6 3.5140 -0.8485 1.4686 8 7 3.7429 -1.6881 2.6472 9 6 4.9935 -1.8604 3.1193 10 8 5.9155 -1.2228 2.6462 11 6 5.2434 -2.8177 4.2049 12 6 6.4695 -3.1698 4.6801 13 6 6.2755 -4.1170 5.7160 14 6 7.1516 -4.8206 6.5516 15 6 6.6538 -5.6887 7.4810 16 6 5.2844 -5.8811 7.6067 17 6 4.4021 -5.1992 6.7963 18 6 4.8852 -4.3098 5.8423 19 7 4.2709 -3.5017 4.9098 20 6 2.9207 -3.3989 4.7100 21 1 2.4609 -2.4261 4.6175 22 6 2.1411 -4.5469 4.6258 23 7 2.7144 -5.7273 4.5689 24 14 0.2783 -4.4112 4.6014 25 1 -0.2306 -4.3310 5.9942 26 1 -0.1193 -3.1886 3.8580 27 1 -0.2965 -5.6061 3.9325 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 3.9488 0.1371 1.6348 38 1 3.9805 -1.3095 0.5981 39 1 2.9944 -2.1201 3.0877 40 1 7.4199 -2.7969 4.3281 41 1 8.2181 -4.6775 6.4609 42 1 7.3315 -6.2299 8.1247 43 1 4.9069 -6.5708 8.3469 44 1 3.3386 -5.3552 6.9018 45 1 2.1721 -6.5313 4.5869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000677799857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:18 Heat of formation + Delta-G solvation = -24.467207 kcal Electronic energy + Delta-G solvation = -28302.382923 eV Core-core repulsion = 24478.061652 eV Total energy + Delta-G solvation = -3824.321271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.58249 -40.09030 -38.31573 -35.93211 -35.88785 -34.15604 -33.43002 -30.74306 -29.43038 -28.64003 -27.73402 -27.57066 -26.80346 -25.00809 -23.45221 -21.99607 -20.98141 -20.03513 -19.51437 -18.54778 -17.98378 -16.67700 -16.13281 -15.82413 -15.51328 -15.45569 -14.81111 -14.57847 -14.53965 -14.46704 -13.89875 -13.79804 -13.33376 -13.11261 -13.00237 -12.92540 -12.49548 -12.44282 -12.43074 -12.25202 -12.13915 -11.94346 -11.87104 -11.67595 -11.35672 -11.20515 -11.15078 -11.06720 -10.75342 -10.57482 -10.18394 -9.78490 -9.61320 -9.39458 -9.23982 -8.66974 -8.57748 -7.18905 -6.85908 -6.53630 -4.70754 1.82585 1.92535 2.76798 2.98699 3.02734 3.08456 3.13622 3.49328 3.78578 4.08223 4.25088 4.49904 4.54639 4.64581 4.69526 4.75094 5.06795 5.26410 5.35621 5.40598 5.45709 5.48475 5.55263 5.61985 5.65918 5.73073 5.75340 5.88208 5.91213 5.95365 6.02185 6.09346 6.16018 6.42553 6.56075 6.68740 6.86163 6.89917 6.92703 7.09768 7.12186 7.46319 7.48316 7.57387 7.65129 7.91750 7.94131 8.20491 8.34598 8.67580 8.91652 9.27999 10.16475 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.004263 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.482965 B = 6567.327923 C = 8176.953620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.353 3.647 6 O -0.432 6.432 7 C 0.067 3.933 8 N -0.725 5.725 9 C 0.599 3.401 10 O -0.559 6.559 11 C -0.018 4.018 12 C -0.163 4.163 13 C -0.134 4.134 14 C -0.084 4.084 15 C -0.161 4.161 16 C -0.144 4.144 17 C -0.059 4.059 18 C 0.109 3.891 19 N -0.260 5.260 20 C -0.377 4.377 21 H 0.108 0.892 22 C 0.065 3.935 23 N -0.818 5.818 24 Si 0.915 3.085 25 H -0.267 1.267 26 H -0.249 1.249 27 H -0.276 1.276 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.425 0.575 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 7.218 -7.024 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.226 3.774 6 O -0.302 6.302 7 C -0.058 4.058 8 N -0.388 5.388 9 C 0.389 3.611 10 O -0.439 6.439 11 C -0.132 4.132 12 C -0.191 4.191 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.180 4.180 16 C -0.165 4.165 17 C -0.078 4.078 18 C -0.006 4.006 19 N 0.076 4.924 20 C -0.504 4.504 21 H 0.125 0.875 22 C -0.150 4.150 23 N -0.446 5.446 24 Si 0.738 3.262 25 H -0.192 1.192 26 H -0.173 1.173 27 H -0.201 1.201 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.273 0.727 40 H 0.151 0.849 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.552 7.234 -7.145 10.770 hybrid contribution -1.202 -0.413 0.037 1.272 sum -4.754 6.821 -7.108 10.938 Atomic orbital electron populations 1.21727 0.92467 1.02864 1.02088 1.21138 0.97872 0.97180 0.95026 1.21862 1.01837 0.93255 1.02810 1.21877 1.01819 1.00541 0.95618 1.24783 0.90850 0.75909 0.85827 1.90458 1.58500 1.37313 1.43965 1.21609 0.94785 0.98124 0.91285 1.46586 1.11081 1.50777 1.30352 1.17263 0.82023 0.80550 0.81291 1.90706 1.43981 1.47980 1.61235 1.20098 0.89719 1.04064 0.99343 1.20380 0.95491 1.02539 1.00697 1.18034 0.92934 1.02081 1.00777 1.20063 0.97518 0.97043 0.95712 1.20274 0.95007 1.01790 1.00956 1.20576 0.93155 1.01688 1.01040 1.20035 0.99090 0.94901 0.93806 1.18270 0.90689 0.98206 0.93431 1.39941 1.04211 1.27938 1.20303 1.19513 0.80329 0.94666 1.55886 0.87466 1.25655 1.01540 0.94584 0.93187 1.69931 1.37851 0.98135 1.38709 0.86066 0.80842 0.79636 0.79631 1.19227 1.17267 1.20132 0.92016 0.91974 0.91963 0.91429 0.91311 0.92088 0.91991 0.91301 0.91440 0.88058 0.88760 0.72658 0.84928 0.87697 0.87863 0.87637 0.86964 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 7.76 37.16 0.29 -1.10 16 2 C -0.11 -1.15 0.87 -155.66 -0.14 -1.29 16 3 C -0.14 -1.17 8.28 37.16 0.31 -0.86 16 4 C -0.14 -1.24 8.25 37.16 0.31 -0.93 16 5 C 0.35 5.11 6.03 -29.03 -0.18 4.94 16 6 O -0.43 -7.87 15.33 6.00 0.09 -7.77 16 7 C 0.07 1.04 5.46 -5.19 -0.03 1.01 16 8 N -0.72 -14.84 5.44 -62.73 -0.34 -15.18 16 9 C 0.60 13.75 7.76 -12.76 -0.10 13.65 16 10 O -0.56 -13.14 16.82 5.22 0.09 -13.05 16 11 C -0.02 -0.44 6.77 -82.24 -0.56 -0.99 16 12 C -0.16 -3.87 10.55 -39.02 -0.41 -4.28 16 13 C -0.13 -3.18 6.16 -106.89 -0.66 -3.84 16 14 C -0.08 -1.74 10.06 -39.51 -0.40 -2.14 16 15 C -0.16 -3.12 9.97 -39.95 -0.40 -3.51 16 16 C -0.14 -2.94 10.02 -39.49 -0.40 -3.33 16 17 C -0.06 -1.38 8.67 -39.41 -0.34 -1.72 16 18 C 0.11 2.76 6.03 -83.83 -0.51 2.25 16 19 N -0.26 -6.68 2.78 -56.08 -0.16 -6.83 16 20 C -0.38 -9.43 7.64 -15.01 -0.11 -9.55 16 21 H 0.11 2.62 6.46 -52.49 -0.34 2.28 16 22 C 0.06 1.58 4.76 -17.47 -0.08 1.50 16 23 N -0.82 -20.88 11.13 55.50 0.62 -20.26 16 24 Si 0.92 18.88 29.56 -169.99 -5.03 13.85 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.25 -5.21 7.11 56.52 0.40 -4.81 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.53 7.43 -51.93 -0.39 0.14 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.55 7.15 -51.93 -0.37 0.18 16 37 H 0.10 1.44 7.57 -51.93 -0.39 1.04 16 38 H 0.09 1.33 7.14 -51.93 -0.37 0.96 16 39 H 0.42 9.31 3.36 -40.82 -0.14 9.17 16 40 H 0.13 2.87 8.06 -52.49 -0.42 2.44 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.11 2.69 6.92 -52.48 -0.36 2.32 16 45 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -30.24 370.91 -8.68 -38.92 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -6.14 Total: 14.93 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.40 Total: -10.19 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.12 Total: -42.28 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.18 Total: -20.83 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.24 -8.68 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000677799857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.451 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds