Wall clock time and date at job start Tue Mar 31 2020 16:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46818 * 2 1 4 4 C 1.52995 * 109.47010 * 239.99990 * 2 1 3 5 5 C 1.50697 * 109.46744 * 119.99789 * 2 1 3 6 6 O 1.20759 * 120.00804 * 0.02562 * 5 2 1 7 7 C 1.50706 * 119.99422 * 179.97438 * 5 2 1 8 8 N 1.46502 * 109.46942 * 185.73534 * 7 5 2 9 9 C 1.34778 * 119.99999 * 185.54088 * 8 7 5 10 10 O 1.21667 * 120.00241 * 6.83145 * 9 8 7 11 11 C 1.46885 * 119.99829 * 186.83361 * 9 8 7 12 12 C 1.36132 * 125.43650 * 173.57423 * 11 9 8 13 13 C 1.41699 * 107.74826 * 180.24325 * 12 11 9 14 14 C 1.40020 * 133.35088 * 179.82296 * 13 12 11 15 15 C 1.36578 * 119.83300 * 179.97438 * 14 13 12 16 16 C 1.38862 * 120.59978 * 359.97438 * 15 14 13 17 17 C 1.37844 * 120.63034 * 359.97438 * 16 15 14 18 18 C 1.39086 * 119.81817 * 0.02562 * 17 16 15 19 19 N 1.37836 * 133.16494 * 180.02562 * 18 17 16 20 20 C 1.36883 * 125.62099 * 359.93757 * 19 18 17 21 21 H 1.07997 * 120.00266 * 133.48973 * 20 19 18 22 22 C 1.39013 * 119.99989 * 313.48252 * 20 19 18 23 23 N 1.31354 * 120.00042 * 351.44451 * 22 20 19 24 24 Si 1.86795 * 120.00254 * 171.16214 * 22 20 19 25 25 H 1.48505 * 109.47566 * 275.33835 * 24 22 20 26 26 H 1.48504 * 109.47142 * 35.34013 * 24 22 20 27 27 H 1.48507 * 109.47473 * 155.33825 * 24 22 20 28 28 H 1.09001 * 109.46752 * 300.00328 * 1 2 3 29 29 H 1.09003 * 109.46934 * 60.00098 * 1 2 3 30 30 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46432 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46907 * 299.99996 * 3 2 1 33 33 H 1.08994 * 109.47087 * 60.00223 * 3 2 1 34 34 H 1.09002 * 109.47378 * 299.99727 * 4 2 1 35 35 H 1.09003 * 109.47344 * 60.00163 * 4 2 1 36 36 H 1.09000 * 109.46676 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47286 * 65.73951 * 7 5 2 38 38 H 1.08999 * 109.47328 * 305.73011 * 7 5 2 39 39 H 0.97002 * 119.99777 * 5.53763 * 8 7 5 40 40 H 1.08000 * 126.12320 * 0.02562 * 12 11 9 41 41 H 1.07994 * 120.08386 * 359.93705 * 14 13 12 42 42 H 1.08000 * 119.70025 * 180.02562 * 15 14 13 43 43 H 1.07991 * 119.68529 * 180.02562 * 16 15 14 44 44 H 1.08005 * 120.09218 * 180.02562 * 17 16 15 45 45 H 0.96993 * 120.00333 * 174.75681 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2476 -1.1697 2.0252 7 6 3.5140 -0.8485 1.4686 8 7 3.7429 -1.6881 2.6472 9 6 4.9935 -1.8604 3.1193 10 8 5.9155 -1.2228 2.6462 11 6 5.2434 -2.8177 4.2049 12 6 6.4695 -3.1698 4.6801 13 6 6.2755 -4.1170 5.7160 14 6 7.1516 -4.8206 6.5516 15 6 6.6538 -5.6887 7.4810 16 6 5.2844 -5.8811 7.6067 17 6 4.4021 -5.1992 6.7963 18 6 4.8852 -4.3098 5.8423 19 7 4.2709 -3.5017 4.9098 20 6 2.9207 -3.3989 4.7100 21 1 2.4609 -2.4261 4.6175 22 6 2.1411 -4.5469 4.6258 23 7 2.7144 -5.7273 4.5689 24 14 0.2783 -4.4112 4.6014 25 1 -0.2306 -4.3310 5.9942 26 1 -0.1193 -3.1886 3.8580 27 1 -0.2965 -5.6061 3.9325 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 3.9488 0.1371 1.6348 38 1 3.9805 -1.3095 0.5981 39 1 2.9944 -2.1201 3.0877 40 1 7.4199 -2.7969 4.3281 41 1 8.2181 -4.6775 6.4609 42 1 7.3315 -6.2299 8.1247 43 1 4.9069 -6.5708 8.3469 44 1 3.3386 -5.3552 6.9018 45 1 2.1721 -6.5313 4.5869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000677799857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:17 Heat of formation + Delta-G solvation = -40.848430 kcal Electronic energy + Delta-G solvation = -28303.093266 eV Core-core repulsion = 24478.061652 eV Total energy + Delta-G solvation = -3825.031614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28787 -41.37458 -39.98058 -37.63038 -36.84149 -35.81143 -35.19850 -32.53741 -31.01229 -30.27052 -29.13761 -28.23874 -27.79344 -26.86206 -24.90545 -23.30546 -22.73166 -21.71322 -21.20479 -20.14553 -19.33080 -18.21982 -17.56784 -17.43754 -16.96554 -16.75876 -16.50895 -16.15747 -16.04574 -15.88552 -15.16261 -14.89932 -14.76750 -14.64498 -14.59299 -14.58098 -14.17462 -13.65023 -13.51369 -13.46886 -13.31374 -13.10794 -13.05457 -13.03132 -12.90064 -12.62305 -12.36334 -12.23473 -11.93429 -11.92801 -11.84469 -11.48064 -11.30517 -11.05742 -10.62781 -10.42314 -10.20631 -8.99225 -8.66480 -8.32429 -6.61216 0.07727 0.76971 1.08452 1.29379 1.32368 1.35789 1.44789 2.04162 2.09502 2.43075 2.75210 2.77061 2.92866 3.33745 3.63399 3.86278 3.89813 3.98934 4.19772 4.26173 4.31029 4.39112 4.41516 4.52812 4.68776 4.72187 4.72306 4.82324 4.82441 4.92759 4.93174 4.98293 5.00121 5.02242 5.16555 5.18764 5.25784 5.33166 5.33609 5.39214 5.42640 5.71946 5.87480 5.93820 6.17146 6.22223 6.31997 6.45447 6.54493 6.85874 7.15425 7.43883 8.33064 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.004263 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.482965 B = 6567.327923 C = 8176.953620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.139 4.139 4 C -0.141 4.141 5 C 0.357 3.643 6 O -0.476 6.476 7 C 0.056 3.944 8 N -0.726 5.726 9 C 0.595 3.405 10 O -0.572 6.572 11 C -0.048 4.048 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.087 4.087 15 C -0.154 4.154 16 C -0.130 4.130 17 C -0.092 4.092 18 C 0.080 3.920 19 N -0.277 5.277 20 C -0.390 4.390 21 H 0.103 0.897 22 C 0.033 3.967 23 N -0.848 5.848 24 Si 0.975 3.025 25 H -0.259 1.259 26 H -0.257 1.257 27 H -0.270 1.270 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.418 0.582 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 7.384 -7.458 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.233 3.767 6 O -0.350 6.350 7 C -0.067 4.067 8 N -0.387 5.387 9 C 0.384 3.616 10 O -0.453 6.453 11 C -0.163 4.163 12 C -0.197 4.197 13 C -0.160 4.160 14 C -0.105 4.105 15 C -0.173 4.173 16 C -0.150 4.150 17 C -0.112 4.112 18 C -0.034 4.034 19 N 0.057 4.943 20 C -0.517 4.517 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.477 5.477 24 Si 0.796 3.204 25 H -0.183 1.183 26 H -0.181 1.181 27 H -0.194 1.194 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.265 0.735 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.115 0.885 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.068 7.417 -7.597 11.052 hybrid contribution -1.244 -0.488 0.229 1.356 sum -4.312 6.929 -7.369 10.995 Atomic orbital electron populations 1.21748 0.92355 1.02030 1.02957 1.21181 0.97909 0.98142 0.93258 1.21904 1.02305 0.91539 1.03844 1.21926 1.02280 0.99980 0.95614 1.25344 0.89810 0.74898 0.86603 1.90450 1.59146 1.39542 1.45884 1.22021 0.96427 0.98256 0.90013 1.46608 1.09899 1.50798 1.31345 1.17185 0.82706 0.80470 0.81207 1.90670 1.44331 1.48588 1.61752 1.20562 0.90292 1.04985 1.00414 1.20662 0.95806 1.02524 1.00688 1.18436 0.93030 1.02868 1.01647 1.20501 0.98840 0.96287 0.94910 1.20769 0.95087 1.00880 1.00526 1.21042 0.93563 1.00393 1.00001 1.20124 0.99048 0.96615 0.95367 1.18770 0.91758 0.98823 0.94073 1.40104 1.04416 1.28699 1.21037 1.19643 0.80717 0.94841 1.56496 0.88011 1.26351 1.04986 0.94015 0.92440 1.70007 1.39211 0.98690 1.39812 0.85191 0.76229 0.79211 0.79766 1.18347 1.18075 1.19440 0.93254 0.88937 0.93691 0.90756 0.88645 0.92738 0.93201 0.88530 0.90782 0.86429 0.86974 0.73506 0.83462 0.84487 0.83343 0.84370 0.88535 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 7.76 71.98 0.56 -2.05 16 2 C -0.10 -2.01 0.87 -52.93 -0.05 -2.05 16 3 C -0.14 -1.98 8.28 71.98 0.60 -1.39 16 4 C -0.14 -2.17 8.25 71.98 0.59 -1.58 16 5 C 0.36 10.42 6.03 29.10 0.18 10.59 16 6 O -0.48 -18.02 15.33 -1.45 -0.02 -18.04 16 7 C 0.06 1.76 5.46 85.63 0.47 2.23 16 8 N -0.73 -30.79 5.44 -470.61 -2.56 -33.35 16 9 C 0.60 28.22 7.76 86.51 0.67 28.89 16 10 O -0.57 -27.29 16.82 -4.24 -0.07 -27.36 16 11 C -0.05 -2.49 6.77 39.91 0.27 -2.22 16 12 C -0.17 -8.15 10.55 22.63 0.24 -7.91 16 13 C -0.16 -7.41 6.16 -21.33 -0.13 -7.55 16 14 C -0.09 -3.38 10.06 22.31 0.22 -3.16 16 15 C -0.15 -5.43 9.97 22.03 0.22 -5.21 16 16 C -0.13 -5.03 10.02 22.33 0.22 -4.81 16 17 C -0.09 -4.36 8.67 22.38 0.19 -4.16 16 18 C 0.08 4.16 6.03 39.06 0.24 4.40 16 19 N -0.28 -14.87 2.78 -331.33 -0.92 -15.79 16 20 C -0.39 -20.46 7.64 84.09 0.64 -19.82 16 21 H 0.10 5.28 6.46 -2.91 -0.02 5.26 16 22 C 0.03 1.68 4.76 84.95 0.40 2.09 16 23 N -0.85 -44.66 11.13 21.67 0.24 -44.42 16 24 Si 0.98 40.08 29.56 68.60 2.03 42.11 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 28 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.07 0.97 7.43 -2.39 -0.02 0.96 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.05 7.15 -2.39 -0.02 1.03 16 37 H 0.12 3.29 7.57 -2.39 -0.02 3.27 16 38 H 0.11 3.10 7.14 -2.39 -0.02 3.08 16 39 H 0.42 19.25 3.36 -92.71 -0.31 18.93 16 40 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 41 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 43 H 0.14 4.37 8.06 -2.92 -0.02 4.34 16 44 H 0.10 4.79 6.92 -2.91 -0.02 4.77 16 45 H 0.29 13.97 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -68.74 370.91 4.93 -63.81 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: 0.70 Total: 46.76 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 5.54 Total: -13.71 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -3.24 Total: -93.56 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.09 Total: -45.40 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -68.74 4.93 -63.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000677799857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.960 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds