Wall clock time and date at job start Tue Mar 31 2020 15:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 C 1.52999 * 109.47744 * 169.22121 * 3 2 1 5 5 C 1.52994 * 109.47271 * 185.00302 * 4 3 2 6 6 C 1.53006 * 109.47118 * 289.22302 * 3 2 1 7 7 N 1.46497 * 109.46764 * 293.52194 * 6 3 2 8 8 C 1.46496 * 120.00083 * 276.76213 * 7 6 3 9 9 C 1.50697 * 109.47596 * 264.60661 * 8 7 6 10 10 H 1.07998 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00127 * 179.97438 * 9 8 7 12 12 N 1.31505 * 120.00094 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47499 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47218 * 120.00163 * 13 11 9 16 16 H 1.48507 * 109.46832 * 239.99862 * 13 11 9 17 17 C 1.34779 * 120.00026 * 96.76902 * 7 6 3 18 18 O 1.21277 * 119.99784 * 185.57938 * 17 7 6 19 19 C 1.50705 * 119.99859 * 5.57762 * 17 7 6 20 20 N 1.46504 * 109.46894 * 173.46457 * 19 17 7 21 21 C 1.44540 * 120.61142 * 269.99907 * 20 19 17 22 22 C 1.53430 * 111.71576 * 180.02562 * 21 20 19 23 23 S 1.82073 * 103.93516 * 359.78992 * 22 21 20 24 24 C 1.33005 * 120.61481 * 90.02384 * 20 19 17 25 25 O 1.21623 * 125.20050 * 359.93952 * 24 20 19 26 26 H 1.08999 * 109.47523 * 296.62433 * 1 2 3 27 27 H 1.09004 * 109.47384 * 56.62679 * 1 2 3 28 28 H 1.09005 * 109.46682 * 176.62363 * 1 2 3 29 29 H 1.09003 * 109.47380 * 239.99872 * 2 1 3 30 30 H 1.08998 * 109.47431 * 119.99810 * 2 1 3 31 31 H 1.09008 * 109.46762 * 49.21981 * 3 2 1 32 32 H 1.09003 * 109.46483 * 305.00436 * 4 3 2 33 33 H 1.08997 * 109.47189 * 64.99571 * 4 3 2 34 34 H 1.09003 * 109.46952 * 299.99488 * 5 4 3 35 35 H 1.08997 * 109.47421 * 60.00045 * 5 4 3 36 36 H 1.09001 * 109.47009 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47081 * 173.52254 * 6 3 2 38 38 H 1.09004 * 109.47031 * 53.52150 * 6 3 2 39 39 H 1.08997 * 109.47210 * 24.61093 * 8 7 6 40 40 H 1.09010 * 109.47158 * 144.60530 * 8 7 6 41 41 H 0.97002 * 120.00482 * 179.97438 * 12 11 9 42 42 H 1.08995 * 109.46950 * 53.46144 * 19 17 7 43 43 H 1.09004 * 109.46815 * 293.46281 * 19 17 7 44 44 H 1.08992 * 109.04205 * 300.61596 * 21 20 19 45 45 H 1.09004 * 109.03905 * 59.43471 * 21 20 19 46 46 H 1.09005 * 110.53423 * 118.61162 * 22 21 20 47 47 H 1.08998 * 110.53789 * 241.25256 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5460 1.4511 0.2698 5 6 4.0337 2.8959 0.3937 6 6 1.7622 2.0817 -1.3621 7 7 2.5707 1.4172 -2.3872 8 6 3.9631 1.8211 -2.5977 9 6 4.0310 2.8252 -3.7193 10 1 3.1272 3.1321 -4.2246 11 6 5.2467 3.3527 -4.0997 12 7 6.3471 2.9793 -3.4841 13 14 5.3306 4.5979 -5.4896 14 1 3.9638 4.8477 -6.0138 15 1 5.9063 5.8690 -4.9815 16 1 6.1886 4.0666 -6.5791 17 6 2.0335 0.4343 -3.1369 18 8 2.7290 -0.1843 -3.9143 19 6 0.5687 0.1041 -3.0090 20 7 0.1992 -0.8805 -4.0289 21 6 -0.2630 -0.4541 -5.3303 22 6 -0.5932 -1.6485 -6.2350 23 16 -0.2246 -3.0990 -5.1980 24 6 0.2824 -2.1833 -3.7743 25 8 0.6552 -2.6699 -2.7239 26 1 -0.3634 0.4605 0.9187 27 1 -0.3634 0.5653 -0.8582 28 1 -0.3633 -1.0260 -0.0605 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5282 2.0088 0.7782 32 1 3.7519 0.9173 1.1975 33 1 4.0654 0.9616 -0.5540 34 1 3.8277 3.4297 -0.5342 35 1 3.5142 3.3854 1.2175 36 1 5.1067 2.9020 0.5854 37 1 2.0196 3.1402 -1.3260 38 1 0.7054 1.9728 -1.6058 39 1 4.3533 2.2698 -1.6842 40 1 4.5600 0.9464 -2.8564 41 1 7.2025 3.3502 -3.7519 42 1 -0.0214 1.0100 -3.1477 43 1 0.3743 -0.3080 -2.0187 44 1 -1.1573 0.1568 -5.2075 45 1 0.5133 0.1469 -5.8040 46 1 -1.6457 -1.6344 -6.5180 47 1 0.0404 -1.6431 -7.1219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729433892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:23 Heat of formation + Delta-G solvation = -56.654191 kcal Electronic energy + Delta-G solvation = -28236.835880 eV Core-core repulsion = 24546.562828 eV Total energy + Delta-G solvation = -3690.273052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48316 -39.07503 -37.08618 -36.46178 -33.91993 -32.63975 -32.26831 -31.30281 -28.62363 -28.06265 -26.19907 -24.98208 -24.75737 -23.00002 -21.63592 -21.01050 -20.02035 -18.32633 -18.19856 -17.22494 -16.86517 -16.42975 -15.81957 -15.46345 -15.26938 -14.66120 -14.49958 -14.20880 -14.19460 -14.05515 -13.87512 -13.48822 -13.10033 -12.97923 -12.77840 -12.58233 -12.32222 -12.18913 -12.08579 -11.48146 -11.40530 -11.24670 -11.15340 -11.02872 -10.98388 -10.70985 -10.55121 -10.27293 -10.22075 -10.15320 -10.03029 -9.84197 -9.63295 -9.49200 -8.75217 -8.43720 -8.22091 -7.66410 -6.06933 -4.11093 1.10853 1.75055 2.29800 3.00274 3.25445 3.28984 3.34107 3.36629 3.91344 4.08365 4.40581 4.50495 4.89585 4.92683 5.04439 5.08956 5.14204 5.18140 5.18364 5.28073 5.32031 5.39488 5.45367 5.55005 5.71327 5.78891 5.80623 5.89839 5.94321 6.03643 6.11585 6.20965 6.26613 6.37794 6.47926 6.56390 6.80980 6.82448 6.85918 7.11003 7.44797 7.52286 7.63472 7.89831 8.21573 8.35730 8.85770 9.02266 9.53221 11.00792 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.005096 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.523830 B = 5492.918972 C = 7440.855447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.126 4.126 5 C -0.154 4.154 6 C 0.108 3.892 7 N -0.588 5.588 8 C 0.230 3.770 9 C -0.525 4.525 10 H 0.054 0.946 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.491 3.509 18 O -0.529 6.529 19 C 0.072 3.928 20 N -0.588 5.588 21 C 0.098 3.902 22 C -0.095 4.095 23 S -0.187 6.187 24 C 0.554 3.446 25 O -0.483 6.483 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 -2.797 2.482 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C -0.123 4.123 4 C -0.163 4.163 5 C -0.211 4.211 6 C -0.016 4.016 7 N -0.320 5.320 8 C 0.111 3.889 9 C -0.564 4.564 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.276 3.724 18 O -0.406 6.406 19 C -0.057 4.057 20 N -0.324 5.324 21 C -0.026 4.026 22 C -0.244 4.244 23 S 0.038 5.962 24 C 0.232 3.768 25 O -0.359 6.359 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.150 0.850 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.134 0.866 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.893 -4.561 2.402 16.708 hybrid contribution 0.302 2.076 -0.658 2.199 sum -15.591 -2.485 1.744 15.884 Atomic orbital electron populations 1.22015 0.96507 1.01766 1.01507 1.21693 0.95163 0.96932 1.02797 1.21659 0.97142 0.96079 0.97438 1.21730 0.94892 0.97780 1.01909 1.21890 1.00818 0.96513 1.01917 1.21621 0.94434 0.98098 0.87446 1.48161 1.15313 1.34535 1.34021 1.19726 0.75122 0.95999 0.98004 1.21453 0.93184 1.23866 1.17862 0.92727 1.24899 0.95512 0.96913 0.96668 1.69929 0.98171 1.43606 1.41389 0.86505 0.78000 0.80983 0.82263 1.19952 1.20974 1.20968 1.20510 0.89094 0.80956 0.81879 1.90693 1.62028 1.50357 1.37497 1.22337 0.95956 0.93189 0.94208 1.47388 1.64983 1.05366 1.14649 1.21398 1.01854 0.96645 0.82742 1.24153 1.06942 0.92460 1.00828 1.87288 1.82103 1.13879 1.12884 1.21525 0.80128 0.83946 0.91153 1.90851 1.48804 1.70323 1.25972 0.92438 0.92533 0.92474 0.91437 0.91835 0.90667 0.93002 0.90052 0.90792 0.93862 0.92844 0.89824 0.91729 0.92006 0.94560 0.92797 0.87784 0.84961 0.89275 0.88671 0.86570 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.22 37.15 0.31 -1.47 16 2 C -0.13 -1.75 4.87 -26.73 -0.13 -1.88 16 3 C -0.10 -1.41 2.17 -90.62 -0.20 -1.60 16 4 C -0.13 -1.98 4.84 -26.73 -0.13 -2.11 16 5 C -0.15 -2.42 8.62 37.15 0.32 -2.10 16 6 C 0.11 1.62 4.87 -4.04 -0.02 1.60 16 7 N -0.59 -11.66 2.00 -175.06 -0.35 -12.01 16 8 C 0.23 5.68 3.57 -5.20 -0.02 5.66 16 9 C -0.52 -14.21 9.34 -34.44 -0.32 -14.53 16 10 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 13 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.49 9.95 6.29 -10.98 -0.07 9.88 16 18 O -0.53 -13.32 16.04 5.56 0.09 -13.23 16 19 C 0.07 1.08 3.79 -5.19 -0.02 1.06 16 20 N -0.59 -8.69 2.29 -180.65 -0.41 -9.10 16 21 C 0.10 1.05 6.80 -4.87 -0.03 1.02 16 22 C -0.09 -0.85 7.42 37.38 0.28 -0.57 16 23 S -0.19 -2.52 23.25 -107.50 -2.50 -5.02 16 24 C 0.55 9.38 8.21 53.27 0.44 9.81 16 25 O -0.48 -9.67 17.28 5.26 0.09 -9.58 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.57 4.72 -51.93 -0.25 0.33 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.15 5.38 -51.93 -0.28 0.87 16 30 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.08 0.86 8.11 -51.92 -0.42 0.44 16 32 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.08 1.57 5.33 -51.93 -0.28 1.30 16 34 H 0.07 1.32 5.28 -51.93 -0.27 1.05 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.28 6.87 -51.93 -0.36 0.92 16 38 H 0.06 0.78 4.61 -51.93 -0.24 0.54 16 39 H 0.06 1.48 3.35 -51.93 -0.17 1.31 16 40 H 0.04 1.06 7.52 -51.92 -0.39 0.67 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.10 1.20 7.24 -51.93 -0.38 0.83 16 43 H 0.13 1.91 2.52 -51.93 -0.13 1.78 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -34.60 367.88 -8.45 -43.06 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.93 Total: 2.74 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.30 Total: 6.39 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.03 Total: -46.14 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.18 Total: -22.81 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.50 Total: -5.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.60 -8.45 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729433892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.599 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds