Wall clock time and date at job start Tue Mar 31 2020 15:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 C 1.52999 * 109.47744 * 169.22121 * 3 2 1 5 5 C 1.52994 * 109.47271 * 185.00302 * 4 3 2 6 6 C 1.53006 * 109.47118 * 289.22302 * 3 2 1 7 7 N 1.46497 * 109.46764 * 293.52194 * 6 3 2 8 8 C 1.46496 * 120.00083 * 276.76213 * 7 6 3 9 9 C 1.50697 * 109.47596 * 264.60661 * 8 7 6 10 10 H 1.07998 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00127 * 179.97438 * 9 8 7 12 12 N 1.31505 * 120.00094 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47499 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47218 * 120.00163 * 13 11 9 16 16 H 1.48507 * 109.46832 * 239.99862 * 13 11 9 17 17 C 1.34779 * 120.00026 * 96.76902 * 7 6 3 18 18 O 1.21277 * 119.99784 * 185.57938 * 17 7 6 19 19 C 1.50705 * 119.99859 * 5.57762 * 17 7 6 20 20 N 1.46504 * 109.46894 * 173.46457 * 19 17 7 21 21 C 1.44540 * 120.61142 * 269.99907 * 20 19 17 22 22 C 1.53430 * 111.71576 * 180.02562 * 21 20 19 23 23 S 1.82073 * 103.93516 * 359.78992 * 22 21 20 24 24 C 1.33005 * 120.61481 * 90.02384 * 20 19 17 25 25 O 1.21623 * 125.20050 * 359.93952 * 24 20 19 26 26 H 1.08999 * 109.47523 * 296.62433 * 1 2 3 27 27 H 1.09004 * 109.47384 * 56.62679 * 1 2 3 28 28 H 1.09005 * 109.46682 * 176.62363 * 1 2 3 29 29 H 1.09003 * 109.47380 * 239.99872 * 2 1 3 30 30 H 1.08998 * 109.47431 * 119.99810 * 2 1 3 31 31 H 1.09008 * 109.46762 * 49.21981 * 3 2 1 32 32 H 1.09003 * 109.46483 * 305.00436 * 4 3 2 33 33 H 1.08997 * 109.47189 * 64.99571 * 4 3 2 34 34 H 1.09003 * 109.46952 * 299.99488 * 5 4 3 35 35 H 1.08997 * 109.47421 * 60.00045 * 5 4 3 36 36 H 1.09001 * 109.47009 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47081 * 173.52254 * 6 3 2 38 38 H 1.09004 * 109.47031 * 53.52150 * 6 3 2 39 39 H 1.08997 * 109.47210 * 24.61093 * 8 7 6 40 40 H 1.09010 * 109.47158 * 144.60530 * 8 7 6 41 41 H 0.97002 * 120.00482 * 179.97438 * 12 11 9 42 42 H 1.08995 * 109.46950 * 53.46144 * 19 17 7 43 43 H 1.09004 * 109.46815 * 293.46281 * 19 17 7 44 44 H 1.08992 * 109.04205 * 300.61596 * 21 20 19 45 45 H 1.09004 * 109.03905 * 59.43471 * 21 20 19 46 46 H 1.09005 * 110.53423 * 118.61162 * 22 21 20 47 47 H 1.08998 * 110.53789 * 241.25256 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5460 1.4511 0.2698 5 6 4.0337 2.8959 0.3937 6 6 1.7622 2.0817 -1.3621 7 7 2.5707 1.4172 -2.3872 8 6 3.9631 1.8211 -2.5977 9 6 4.0310 2.8252 -3.7193 10 1 3.1272 3.1321 -4.2246 11 6 5.2467 3.3527 -4.0997 12 7 6.3471 2.9793 -3.4841 13 14 5.3306 4.5979 -5.4896 14 1 3.9638 4.8477 -6.0138 15 1 5.9063 5.8690 -4.9815 16 1 6.1886 4.0666 -6.5791 17 6 2.0335 0.4343 -3.1369 18 8 2.7290 -0.1843 -3.9143 19 6 0.5687 0.1041 -3.0090 20 7 0.1992 -0.8805 -4.0289 21 6 -0.2630 -0.4541 -5.3303 22 6 -0.5932 -1.6485 -6.2350 23 16 -0.2246 -3.0990 -5.1980 24 6 0.2824 -2.1833 -3.7743 25 8 0.6552 -2.6699 -2.7239 26 1 -0.3634 0.4605 0.9187 27 1 -0.3634 0.5653 -0.8582 28 1 -0.3633 -1.0260 -0.0605 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5282 2.0088 0.7782 32 1 3.7519 0.9173 1.1975 33 1 4.0654 0.9616 -0.5540 34 1 3.8277 3.4297 -0.5342 35 1 3.5142 3.3854 1.2175 36 1 5.1067 2.9020 0.5854 37 1 2.0196 3.1402 -1.3260 38 1 0.7054 1.9728 -1.6058 39 1 4.3533 2.2698 -1.6842 40 1 4.5600 0.9464 -2.8564 41 1 7.2025 3.3502 -3.7519 42 1 -0.0214 1.0100 -3.1477 43 1 0.3743 -0.3080 -2.0187 44 1 -1.1573 0.1568 -5.2075 45 1 0.5133 0.1469 -5.8040 46 1 -1.6457 -1.6344 -6.5180 47 1 0.0404 -1.6431 -7.1219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729433892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:22 Heat of formation + Delta-G solvation = -79.594960 kcal Electronic energy + Delta-G solvation = -28237.830667 eV Core-core repulsion = 24546.562828 eV Total energy + Delta-G solvation = -3691.267838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80831 -40.42066 -38.50216 -37.69779 -35.62285 -34.34854 -33.66826 -32.31492 -30.21578 -29.30819 -27.77878 -26.20431 -25.84719 -24.72785 -22.79638 -22.29760 -21.32459 -19.70667 -19.32003 -18.77700 -18.50549 -17.77693 -17.14754 -16.87281 -16.77883 -16.21426 -15.65318 -15.52127 -15.39003 -15.28588 -15.21836 -14.85758 -14.48565 -14.23870 -13.92277 -13.81558 -13.76326 -13.43767 -13.15560 -13.05884 -12.92403 -12.70204 -12.57562 -12.40892 -12.31686 -12.15011 -11.99551 -11.83251 -11.67666 -11.50598 -11.36256 -11.22333 -11.09335 -10.98777 -10.57916 -10.12677 -9.37586 -9.26875 -8.18482 -6.31996 -0.00102 0.86133 1.05354 1.35978 1.38255 1.49156 1.75420 1.93320 2.33839 2.50171 3.11392 3.26210 3.58028 3.80578 3.87409 3.90961 3.97444 3.99255 4.15566 4.35069 4.40886 4.48653 4.54636 4.57228 4.58880 4.66704 4.67128 4.79961 4.82241 4.88140 5.02712 5.08158 5.15721 5.18315 5.24834 5.25204 5.32907 5.43722 5.53026 5.57100 5.65726 5.76036 5.90914 6.13432 6.41708 6.72552 6.81250 7.30146 7.46630 8.88249 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.005096 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.523830 B = 5492.918972 C = 7440.855447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.147 4.147 6 C 0.100 3.900 7 N -0.588 5.588 8 C 0.249 3.751 9 C -0.535 4.535 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.963 3.037 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.288 1.288 17 C 0.482 3.518 18 O -0.594 6.594 19 C 0.081 3.919 20 N -0.589 5.589 21 C 0.086 3.914 22 C -0.078 4.078 23 S -0.202 6.202 24 C 0.535 3.465 25 O -0.533 6.533 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.068 0.932 40 H -0.027 1.027 41 H 0.264 0.736 42 H 0.151 0.849 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.162 0.838 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.480 -0.591 2.283 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.113 4.113 4 C -0.164 4.164 5 C -0.204 4.204 6 C -0.022 4.022 7 N -0.319 5.319 8 C 0.128 3.872 9 C -0.574 4.574 10 H 0.073 0.927 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.186 1.186 15 H -0.197 1.197 16 H -0.214 1.214 17 C 0.269 3.731 18 O -0.475 6.475 19 C -0.048 4.048 20 N -0.323 5.323 21 C -0.036 4.036 22 C -0.226 4.226 23 S 0.024 5.976 24 C 0.215 3.785 25 O -0.413 6.413 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.085 0.915 40 H -0.009 1.009 41 H 0.073 0.927 42 H 0.168 0.832 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.097 0.903 46 H 0.180 0.820 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.831 -2.322 2.198 20.087 hybrid contribution 1.552 1.350 -0.611 2.146 sum -18.278 -0.973 1.587 18.373 Atomic orbital electron populations 1.21969 0.93840 1.01850 1.03503 1.21645 0.97437 0.96408 1.00867 1.21648 0.95503 0.96489 0.97702 1.21689 0.96497 0.97503 1.00670 1.21799 1.00248 0.96365 1.01950 1.22003 0.95734 0.97709 0.86760 1.48110 1.13917 1.34793 1.35035 1.19205 0.77626 0.92763 0.97624 1.21761 0.93273 1.23958 1.18374 0.92730 1.25804 0.95143 0.98982 0.99208 1.70069 0.98754 1.44993 1.43065 0.85440 0.78402 0.78650 0.78745 1.18606 1.19651 1.21443 1.21519 0.91233 0.79813 0.80485 1.90652 1.64093 1.52455 1.40285 1.22385 0.92098 0.95161 0.95182 1.47625 1.63957 1.04715 1.15972 1.21790 1.03182 0.97608 0.81068 1.24467 1.09972 0.88671 0.99519 1.87284 1.81726 1.16271 1.12354 1.22101 0.79926 0.84932 0.91550 1.90808 1.50770 1.71658 1.28113 0.89633 0.91225 0.93388 0.95652 0.91723 0.86516 0.91576 0.94934 0.93207 0.90193 0.94551 0.89747 0.87679 0.91467 1.00919 0.92715 0.83175 0.84217 0.84415 0.90313 0.82019 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.22 71.98 0.59 -2.35 16 2 C -0.13 -3.32 4.87 30.59 0.15 -3.17 16 3 C -0.09 -2.38 2.17 -10.79 -0.02 -2.41 16 4 C -0.13 -4.02 4.84 30.59 0.15 -3.87 16 5 C -0.15 -4.57 8.62 71.98 0.62 -3.95 16 6 C 0.10 2.82 4.87 86.38 0.42 3.24 16 7 N -0.59 -23.95 2.00 -826.15 -1.66 -25.61 16 8 C 0.25 13.07 3.57 85.63 0.31 13.37 16 9 C -0.53 -29.89 9.34 25.60 0.24 -29.65 16 10 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 11 C 0.01 0.41 5.46 84.66 0.46 0.87 16 12 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 13 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 17 C 0.48 20.12 6.29 87.66 0.55 20.67 16 18 O -0.59 -31.88 16.04 -3.02 -0.05 -31.93 16 19 C 0.08 2.30 3.79 85.63 0.32 2.62 16 20 N -0.59 -16.69 2.29 -844.67 -1.94 -18.62 16 21 C 0.09 1.60 6.80 86.89 0.59 2.19 16 22 C -0.08 -1.15 7.42 72.13 0.54 -0.61 16 23 S -0.20 -5.30 23.25 -56.49 -1.31 -6.61 16 24 C 0.54 18.31 8.21 130.07 1.07 19.38 16 25 O -0.53 -22.37 17.28 -4.10 -0.07 -22.44 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.12 4.72 -2.39 -0.01 1.11 16 28 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.02 0.88 5.38 -2.39 -0.01 0.87 16 30 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 31 H 0.12 2.10 8.11 -2.38 -0.02 2.08 16 32 H 0.07 1.88 8.11 -2.39 -0.02 1.87 16 33 H 0.03 1.35 5.33 -2.39 -0.01 1.34 16 34 H 0.05 1.79 5.28 -2.39 -0.01 1.78 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 2.41 6.87 -2.39 -0.02 2.40 16 38 H 0.11 2.10 4.61 -2.38 -0.01 2.09 16 39 H 0.07 3.44 3.35 -2.39 -0.01 3.43 16 40 H -0.03 -1.76 7.52 -2.38 -0.02 -1.78 16 41 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.15 2.82 7.24 -2.39 -0.02 2.80 16 43 H 0.14 3.85 2.52 -2.38 -0.01 3.85 16 44 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.16 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -85.58 367.88 4.26 -81.32 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.99 Total: 17.12 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.98 Total: 16.34 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -3.31 Total: -99.88 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -0.12 Total: -54.37 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -1.31 Total: -6.61 kcal Total: -85.58 4.26 -81.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729433892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.728 kcal (2) G-P(sol) polarization free energy of solvation -85.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds