Wall clock time and date at job start Tue Mar 31 2020 16:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47327 * 2 1 4 4 C 1.53001 * 109.46924 * 119.99830 * 2 1 3 5 5 N 1.46500 * 109.47228 * 65.00233 * 4 2 1 6 6 C 1.46502 * 119.99434 * 264.18300 * 5 4 2 7 7 C 1.50706 * 109.46874 * 263.35553 * 6 5 4 8 8 H 1.07993 * 120.00192 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99752 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00087 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00128 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46924 * 59.99774 * 11 9 7 13 13 H 1.48499 * 109.47484 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47121 * 300.00301 * 11 9 7 15 15 C 1.34771 * 120.00176 * 84.18602 * 5 4 2 16 16 O 1.21603 * 120.00157 * 3.80456 * 15 5 4 17 17 C 1.47463 * 119.99925 * 183.81343 * 15 5 4 18 18 C 1.36236 * 126.36214 * 173.71854 * 17 15 5 19 19 O 1.34284 * 107.12043 * 180.25825 * 18 17 15 20 20 C 1.34475 * 108.16745 * 0.02562 * 19 18 17 21 21 C 1.47873 * 125.48724 * 180.02562 * 20 19 18 22 22 C 1.39548 * 120.14110 * 179.69718 * 21 20 19 23 23 C 1.37976 * 119.85444 * 179.69675 * 22 21 20 24 24 C 1.38351 * 120.13955 * 0.57494 * 23 22 21 25 25 C 1.38344 * 120.28732 * 359.72062 * 24 23 22 26 26 C 1.37968 * 120.14548 * 359.97438 * 25 24 23 27 27 N 1.30890 * 109.02283 * 359.97438 * 20 19 18 28 28 H 1.08996 * 109.47304 * 300.00380 * 1 2 3 29 29 H 1.08998 * 109.46807 * 60.00116 * 1 2 3 30 30 H 1.09003 * 109.46790 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47304 * 239.99620 * 2 1 3 32 32 H 1.08997 * 109.47368 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46509 * 299.99880 * 3 2 1 34 34 H 1.08996 * 109.47239 * 59.99580 * 3 2 1 35 35 H 1.08996 * 109.47075 * 305.00105 * 4 2 1 36 36 H 1.09007 * 109.47251 * 185.00334 * 4 2 1 37 37 H 1.08993 * 109.47341 * 23.36181 * 6 5 4 38 38 H 1.09005 * 109.46883 * 143.36369 * 6 5 4 39 39 H 0.97001 * 119.99889 * 180.02562 * 10 9 7 40 40 H 1.07998 * 126.44197 * 0.25478 * 18 17 15 41 41 H 1.07994 * 120.07332 * 359.97438 * 22 21 20 42 42 H 1.07997 * 119.92897 * 180.32467 * 23 22 21 43 43 H 1.08000 * 119.85110 * 179.74088 * 24 23 22 44 44 H 1.08005 * 119.92900 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.07096 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4375 -2.5877 1.8714 7 6 0.7994 -3.1515 3.2214 8 1 1.8310 -3.1688 3.5405 9 6 -0.1866 -3.6452 4.0491 10 7 -1.4428 -3.6245 3.6603 11 14 0.2617 -4.3434 5.7226 12 1 0.9207 -3.2912 6.5375 13 1 -0.9696 -4.8046 6.4127 14 1 1.1907 -5.4888 5.5484 15 6 2.4135 -3.0129 0.5105 16 8 3.4576 -2.6496 0.0039 17 6 1.9800 -4.4164 0.3805 18 6 2.5801 -5.3807 -0.3718 19 8 1.8663 -6.5070 -0.2133 20 6 0.8449 -6.2423 0.6204 21 6 -0.1803 -7.2141 1.0576 22 6 -1.1916 -6.8190 1.9342 23 6 -2.1489 -7.7290 2.3334 24 6 -2.1006 -9.0337 1.8758 25 6 -1.0971 -9.4333 1.0114 26 6 -0.1375 -8.5315 0.5997 27 7 0.9051 -4.9862 0.9834 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6053 -0.2617 2.1369 36 1 3.1263 -0.6443 1.2953 37 1 -0.2437 -1.7466 1.9996 38 1 -0.0467 -3.3596 1.2733 39 1 -2.1365 -3.9715 4.2428 40 1 3.4639 -5.2618 -0.9811 41 1 -1.2276 -5.8020 2.2959 42 1 -2.9351 -7.4231 3.0076 43 1 -2.8499 -9.7432 2.1945 44 1 -1.0647 -10.4534 0.6581 45 1 0.6452 -8.8447 -0.0754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737819020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:43 Heat of formation + Delta-G solvation = 16.479836 kcal Electronic energy + Delta-G solvation = -28587.737419 eV Core-core repulsion = 24765.191745 eV Total energy + Delta-G solvation = -3822.545674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84856 -39.09604 -38.72258 -36.07091 -34.62703 -33.56794 -32.19486 -31.97188 -30.70189 -28.75180 -27.52785 -26.78026 -25.96038 -23.68347 -23.27180 -22.60602 -21.83360 -20.79190 -19.91661 -18.85188 -17.26886 -16.63135 -16.37303 -16.11690 -15.81253 -15.61074 -15.19765 -14.62887 -14.43565 -14.39148 -14.19910 -13.53910 -13.26389 -13.17755 -13.09340 -12.81371 -12.66381 -12.34843 -12.12762 -11.98027 -11.60821 -11.35478 -11.25977 -11.00223 -10.89135 -10.88310 -10.77505 -10.60336 -10.55471 -10.25462 -10.10684 -9.67305 -9.44788 -9.44219 -9.22641 -8.74984 -8.30751 -7.98991 -7.59092 -5.99881 -4.00178 0.95653 1.61435 1.81677 2.84147 2.93607 3.31217 3.34454 3.40004 3.80700 3.94240 4.14551 4.32304 4.47620 5.03005 5.11805 5.17864 5.25997 5.29715 5.31298 5.34961 5.39516 5.50543 5.61654 5.75849 5.88139 5.88508 5.96576 6.02746 6.06821 6.10923 6.17875 6.26339 6.27979 6.34302 6.40890 6.46369 6.60718 6.64235 6.75133 6.77276 6.83586 6.90670 7.19214 7.52616 7.75956 7.91916 8.09670 8.29497 8.35297 8.89749 9.03788 9.60940 11.07437 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004934 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.269426 B = 5673.327203 C = 7075.806840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.574 5.574 6 C 0.226 3.774 7 C -0.503 4.503 8 H 0.049 0.951 9 C 0.073 3.927 10 N -0.890 5.890 11 Si 0.879 3.121 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.279 1.279 15 C 0.595 3.405 16 O -0.573 6.573 17 C -0.045 4.045 18 C -0.013 4.013 19 O -0.201 6.201 20 C 0.207 3.793 21 C -0.012 4.012 22 C -0.063 4.063 23 C -0.122 4.122 24 C -0.109 4.109 25 C -0.132 4.132 26 C -0.098 4.098 27 N -0.373 5.373 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.260 0.740 40 H 0.225 0.775 41 H 0.168 0.832 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -4.832 -7.010 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.302 5.302 6 C 0.107 3.893 7 C -0.542 4.542 8 H 0.067 0.933 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.707 3.293 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.205 1.205 15 C 0.382 3.618 16 O -0.456 6.456 17 C -0.167 4.167 18 C -0.087 4.087 19 O -0.088 6.088 20 C 0.002 3.998 21 C -0.013 4.013 22 C -0.082 4.082 23 C -0.140 4.140 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.117 4.117 27 N -0.101 5.101 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.241 0.759 41 H 0.186 0.814 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.271 -4.372 -6.764 8.058 hybrid contribution 0.770 -0.787 0.715 1.313 sum 0.499 -5.159 -6.048 7.966 Atomic orbital electron populations 1.21862 0.94941 1.02544 1.00861 1.21487 0.96387 0.95862 0.99303 1.21745 1.00802 0.95890 1.01435 1.21429 1.00053 0.81033 0.97376 1.48143 1.26813 1.06758 1.48451 1.20002 0.80333 0.96263 0.92684 1.21256 0.93355 1.39248 1.00317 0.93255 1.24685 0.94901 0.95757 0.97471 1.69911 0.99290 1.47087 1.36759 0.86865 0.77797 0.79672 0.84942 1.20520 1.21158 1.20504 1.16787 0.83225 0.82839 0.78912 1.90700 1.24172 1.79162 1.51525 1.21885 0.96217 0.97145 1.01495 1.25139 0.98289 0.82746 1.02535 1.84340 1.34350 1.36663 1.53491 1.24175 0.90011 0.92456 0.93152 1.17321 0.93258 0.90452 1.00302 1.21891 0.90839 1.02716 0.92742 1.21176 0.99249 0.93112 1.00503 1.21303 0.98139 0.96268 0.97063 1.20931 0.95471 0.99315 0.99318 1.21168 0.99003 0.92036 0.99508 1.71840 1.16441 1.03414 1.18412 0.92648 0.93657 0.91843 0.91307 0.92804 0.92968 0.92683 0.90167 0.91216 0.94940 0.90702 0.93036 0.75891 0.81437 0.85304 0.86063 0.85863 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.38 37.16 0.31 -1.99 16 2 C -0.11 -1.77 3.08 -90.62 -0.28 -2.05 16 3 C -0.14 -1.83 9.19 37.16 0.34 -1.48 16 4 C 0.12 2.32 4.78 -4.04 -0.02 2.30 16 5 N -0.57 -12.44 2.21 -176.31 -0.39 -12.82 16 6 C 0.23 5.43 3.67 -5.19 -0.02 5.41 16 7 C -0.50 -13.21 8.36 -34.44 -0.29 -13.50 16 8 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 10 N -0.89 -23.33 12.56 55.43 0.70 -22.63 16 11 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 C 0.60 13.08 7.56 -12.50 -0.09 12.98 16 16 O -0.57 -12.90 16.54 5.28 0.09 -12.81 16 17 C -0.05 -0.94 6.64 -83.08 -0.55 -1.49 16 18 C -0.01 -0.23 11.94 30.01 0.36 0.13 16 19 O -0.20 -3.48 10.45 5.29 0.06 -3.43 16 20 C 0.21 4.02 7.88 -14.01 -0.11 3.91 16 21 C -0.01 -0.21 5.87 -104.98 -0.62 -0.83 16 22 C -0.06 -1.16 9.68 -39.19 -0.38 -1.54 16 23 C -0.12 -1.84 10.03 -39.64 -0.40 -2.24 16 24 C -0.11 -1.36 10.04 -39.50 -0.40 -1.76 16 25 C -0.13 -1.61 10.03 -39.64 -0.40 -2.01 16 26 C -0.10 -1.39 9.71 -39.19 -0.38 -1.77 16 27 N -0.37 -8.20 6.72 -8.26 -0.06 -8.25 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.15 6.46 -51.93 -0.34 0.82 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.48 8.02 -51.93 -0.42 1.06 16 36 H 0.07 1.31 7.55 -51.93 -0.39 0.91 16 37 H 0.03 0.81 6.94 -51.93 -0.36 0.45 16 38 H 0.08 1.90 5.32 -51.93 -0.28 1.63 16 39 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 40 H 0.22 2.94 8.06 -52.49 -0.42 2.52 16 41 H 0.17 3.66 7.09 -52.49 -0.37 3.29 16 42 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.13 1.55 7.89 -52.49 -0.41 1.14 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -29.29 378.13 -8.28 -37.57 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.34 Total: 4.89 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.02 Total: -4.12 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.25 Total: -43.71 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.14 Total: -16.23 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.29 -8.28 -37.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737819020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.051 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds