Wall clock time and date at job start Tue Mar 31 2020 16:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47327 * 2 1 4 4 C 1.53001 * 109.46924 * 119.99830 * 2 1 3 5 5 N 1.46500 * 109.47228 * 65.00233 * 4 2 1 6 6 C 1.46502 * 119.99434 * 264.18300 * 5 4 2 7 7 C 1.50706 * 109.46874 * 263.35553 * 6 5 4 8 8 H 1.07993 * 120.00192 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99752 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00087 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00128 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46924 * 59.99774 * 11 9 7 13 13 H 1.48499 * 109.47484 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47121 * 300.00301 * 11 9 7 15 15 C 1.34771 * 120.00176 * 84.18602 * 5 4 2 16 16 O 1.21603 * 120.00157 * 3.80456 * 15 5 4 17 17 C 1.47463 * 119.99925 * 183.81343 * 15 5 4 18 18 C 1.36236 * 126.36214 * 173.71854 * 17 15 5 19 19 O 1.34284 * 107.12043 * 180.25825 * 18 17 15 20 20 C 1.34475 * 108.16745 * 0.02562 * 19 18 17 21 21 C 1.47873 * 125.48724 * 180.02562 * 20 19 18 22 22 C 1.39548 * 120.14110 * 179.69718 * 21 20 19 23 23 C 1.37976 * 119.85444 * 179.69675 * 22 21 20 24 24 C 1.38351 * 120.13955 * 0.57494 * 23 22 21 25 25 C 1.38344 * 120.28732 * 359.72062 * 24 23 22 26 26 C 1.37968 * 120.14548 * 359.97438 * 25 24 23 27 27 N 1.30890 * 109.02283 * 359.97438 * 20 19 18 28 28 H 1.08996 * 109.47304 * 300.00380 * 1 2 3 29 29 H 1.08998 * 109.46807 * 60.00116 * 1 2 3 30 30 H 1.09003 * 109.46790 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47304 * 239.99620 * 2 1 3 32 32 H 1.08997 * 109.47368 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46509 * 299.99880 * 3 2 1 34 34 H 1.08996 * 109.47239 * 59.99580 * 3 2 1 35 35 H 1.08996 * 109.47075 * 305.00105 * 4 2 1 36 36 H 1.09007 * 109.47251 * 185.00334 * 4 2 1 37 37 H 1.08993 * 109.47341 * 23.36181 * 6 5 4 38 38 H 1.09005 * 109.46883 * 143.36369 * 6 5 4 39 39 H 0.97001 * 119.99889 * 180.02562 * 10 9 7 40 40 H 1.07998 * 126.44197 * 0.25478 * 18 17 15 41 41 H 1.07994 * 120.07332 * 359.97438 * 22 21 20 42 42 H 1.07997 * 119.92897 * 180.32467 * 23 22 21 43 43 H 1.08000 * 119.85110 * 179.74088 * 24 23 22 44 44 H 1.08005 * 119.92900 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.07096 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4375 -2.5877 1.8714 7 6 0.7994 -3.1515 3.2214 8 1 1.8310 -3.1688 3.5405 9 6 -0.1866 -3.6452 4.0491 10 7 -1.4428 -3.6245 3.6603 11 14 0.2617 -4.3434 5.7226 12 1 0.9207 -3.2912 6.5375 13 1 -0.9696 -4.8046 6.4127 14 1 1.1907 -5.4888 5.5484 15 6 2.4135 -3.0129 0.5105 16 8 3.4576 -2.6496 0.0039 17 6 1.9800 -4.4164 0.3805 18 6 2.5801 -5.3807 -0.3718 19 8 1.8663 -6.5070 -0.2133 20 6 0.8449 -6.2423 0.6204 21 6 -0.1803 -7.2141 1.0576 22 6 -1.1916 -6.8190 1.9342 23 6 -2.1489 -7.7290 2.3334 24 6 -2.1006 -9.0337 1.8758 25 6 -1.0971 -9.4333 1.0114 26 6 -0.1375 -8.5315 0.5997 27 7 0.9051 -4.9862 0.9834 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6053 -0.2617 2.1369 36 1 3.1263 -0.6443 1.2953 37 1 -0.2437 -1.7466 1.9996 38 1 -0.0467 -3.3596 1.2733 39 1 -2.1365 -3.9715 4.2428 40 1 3.4639 -5.2618 -0.9811 41 1 -1.2276 -5.8020 2.2959 42 1 -2.9351 -7.4231 3.0076 43 1 -2.8499 -9.7432 2.1945 44 1 -1.0647 -10.4534 0.6581 45 1 0.6452 -8.8447 -0.0754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737819020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:42 Heat of formation + Delta-G solvation = 0.888945 kcal Electronic energy + Delta-G solvation = -28588.413491 eV Core-core repulsion = 24765.191745 eV Total energy + Delta-G solvation = -3823.221745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.30231 -40.75025 -39.86640 -37.61704 -36.18050 -35.20855 -34.05102 -33.24262 -31.83134 -30.11962 -29.37890 -28.00319 -27.54256 -25.27476 -24.69469 -24.16723 -23.14685 -22.12932 -21.27037 -20.35229 -18.86145 -18.40026 -17.85079 -17.66161 -17.23315 -17.17824 -16.43318 -16.29940 -16.02115 -15.88852 -15.54578 -14.76624 -14.67946 -14.52897 -14.43984 -14.30156 -14.06557 -13.82573 -13.70131 -13.52582 -13.06889 -12.96471 -12.75680 -12.60544 -12.34916 -12.33684 -12.12902 -12.10284 -11.94682 -11.89098 -11.61915 -11.53560 -11.20012 -10.92196 -10.75125 -10.30202 -9.88157 -9.48009 -9.18567 -8.03480 -6.09490 -0.29839 0.37861 0.48931 1.35813 1.37950 1.40339 1.44695 1.54587 2.20229 2.35747 2.47871 2.91495 2.95691 3.27486 3.65399 3.83235 3.95395 4.01731 4.06235 4.13523 4.17678 4.29525 4.48539 4.53826 4.57074 4.61471 4.65014 4.73119 4.79098 4.85271 4.89820 4.98927 5.01068 5.05388 5.06212 5.19982 5.20332 5.40166 5.44283 5.48984 5.54488 5.58297 5.64944 5.88037 5.92817 6.03949 6.27724 6.50497 6.64343 6.95737 7.23606 7.53893 9.02731 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004934 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.269426 B = 5673.327203 C = 7075.806840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.134 4.134 4 C 0.120 3.880 5 N -0.580 5.580 6 C 0.250 3.750 7 C -0.514 4.514 8 H 0.027 0.973 9 C 0.045 3.955 10 N -0.901 5.901 11 Si 0.925 3.075 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.289 1.289 15 C 0.590 3.410 16 O -0.585 6.585 17 C -0.093 4.093 18 C 0.020 3.980 19 O -0.189 6.189 20 C 0.205 3.795 21 C -0.041 4.041 22 C -0.095 4.095 23 C -0.132 4.132 24 C -0.094 4.094 25 C -0.119 4.119 26 C -0.093 4.093 27 N -0.415 5.415 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.017 0.983 38 H 0.061 0.939 39 H 0.263 0.737 40 H 0.265 0.735 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 -6.925 -7.773 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.191 4.191 4 C -0.003 4.003 5 N -0.307 5.307 6 C 0.130 3.870 7 C -0.553 4.553 8 H 0.045 0.955 9 C -0.155 4.155 10 N -0.541 5.541 11 Si 0.752 3.248 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.215 1.215 15 C 0.379 3.621 16 O -0.469 6.469 17 C -0.214 4.214 18 C -0.054 4.054 19 O -0.076 6.076 20 C -0.001 4.001 21 C -0.042 4.042 22 C -0.115 4.115 23 C -0.150 4.150 24 C -0.112 4.112 25 C -0.137 4.137 26 C -0.113 4.113 27 N -0.143 5.143 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.281 0.719 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.179 0.821 44 H 0.185 0.815 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.427 -6.441 -7.524 9.914 hybrid contribution 0.783 -0.255 0.923 1.236 sum 0.355 -6.696 -6.602 9.410 Atomic orbital electron populations 1.21793 0.94887 1.00865 1.02054 1.21407 0.96304 0.97491 0.97016 1.21697 1.01090 0.93508 1.02835 1.21615 0.99911 0.79901 0.98832 1.48145 1.26190 1.08062 1.48345 1.19530 0.80851 0.94928 0.91694 1.21248 0.92239 1.40262 1.01553 0.95499 1.25128 0.94918 0.95806 0.99692 1.69967 0.99665 1.46989 1.37435 0.86156 0.77719 0.78672 0.82245 1.20415 1.19812 1.21511 1.17008 0.83046 0.83497 0.78598 1.90663 1.24403 1.79638 1.52151 1.21970 0.97755 0.97485 1.04197 1.25818 0.97802 0.81412 1.00341 1.84365 1.33859 1.36437 1.52910 1.24576 0.90459 0.92227 0.92817 1.17504 0.93219 0.91771 1.01689 1.21655 0.93203 1.01725 0.94877 1.21332 0.98665 0.94088 1.00906 1.21742 0.98582 0.95339 0.95546 1.21452 0.93774 1.00724 0.97718 1.21459 0.99994 0.90606 0.99214 1.71726 1.17582 1.04963 1.20014 0.92582 0.91234 0.94940 0.92706 0.92332 0.91018 0.91813 0.90470 0.91475 0.96533 0.92121 0.92792 0.71894 0.85740 0.84701 0.82081 0.81494 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.38 71.98 0.60 -3.88 16 2 C -0.10 -3.32 3.08 -10.79 -0.03 -3.35 16 3 C -0.13 -3.28 9.19 71.98 0.66 -2.62 16 4 C 0.12 4.64 4.78 86.38 0.41 5.05 16 5 N -0.58 -26.50 2.21 -829.98 -1.83 -28.34 16 6 C 0.25 12.78 3.67 85.63 0.31 13.09 16 7 C -0.51 -28.45 8.36 25.60 0.21 -28.24 16 8 H 0.03 1.57 7.81 -2.91 -0.02 1.55 16 9 C 0.04 2.44 5.46 84.65 0.46 2.90 16 10 N -0.90 -49.10 12.56 21.45 0.27 -48.83 16 11 Si 0.92 44.04 29.54 68.60 2.03 46.06 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 15 C 0.59 26.99 7.56 86.68 0.66 27.64 16 16 O -0.58 -26.83 16.54 -4.04 -0.07 -26.90 16 17 C -0.09 -4.02 6.64 40.50 0.27 -3.75 16 18 C 0.02 0.68 11.94 67.35 0.80 1.49 16 19 O -0.19 -6.43 10.45 -3.97 -0.04 -6.47 16 20 C 0.20 8.16 7.88 87.39 0.69 8.85 16 21 C -0.04 -1.45 5.87 -20.10 -0.12 -1.56 16 22 C -0.10 -3.63 9.68 22.52 0.22 -3.41 16 23 C -0.13 -3.89 10.03 22.23 0.22 -3.67 16 24 C -0.09 -2.01 10.04 22.32 0.22 -1.78 16 25 C -0.12 -2.39 10.03 22.23 0.22 -2.17 16 26 C -0.09 -2.43 9.71 22.52 0.22 -2.21 16 27 N -0.41 -19.19 6.72 -294.26 -1.98 -21.16 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.03 1.23 6.46 -2.39 -0.02 1.21 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 2.97 8.02 -2.39 -0.02 2.95 16 36 H 0.07 2.60 7.55 -2.38 -0.02 2.58 16 37 H 0.02 0.89 6.94 -2.39 -0.02 0.87 16 38 H 0.06 3.33 5.32 -2.38 -0.01 3.32 16 39 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 40 H 0.27 6.36 8.06 -2.91 -0.02 6.33 16 41 H 0.12 5.86 7.09 -2.91 -0.02 5.84 16 42 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 43 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.15 3.13 7.89 -2.91 -0.02 3.11 16 Total: -1.00 -67.98 378.13 5.41 -62.56 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.99 Total: 20.69 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 6.04 Total: 2.38 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -3.54 Total: -98.33 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.11 Total: -33.37 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.98 5.41 -62.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737819020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.453 kcal (2) G-P(sol) polarization free energy of solvation -67.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds