Wall clock time and date at job start Tue Mar 31 2020 16:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47054 * 2 1 4 4 C 1.52993 * 109.47471 * 120.00745 * 2 1 3 5 5 N 1.46499 * 109.47224 * 174.45922 * 4 2 1 6 6 C 1.46500 * 119.99823 * 275.75615 * 5 4 2 7 7 C 1.50698 * 109.47479 * 278.96169 * 6 5 4 8 8 H 1.08000 * 119.99827 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00148 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99976 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99945 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46889 * 90.00290 * 11 9 7 13 13 H 1.48501 * 109.47128 * 209.99931 * 11 9 7 14 14 H 1.48495 * 109.47072 * 330.00263 * 11 9 7 15 15 C 1.34775 * 120.00272 * 95.76010 * 5 4 2 16 16 O 1.21592 * 120.00062 * 6.41310 * 15 5 4 17 17 C 1.47583 * 120.00253 * 186.41459 * 15 5 4 18 18 C 1.39812 * 120.00192 * 150.07188 * 17 15 5 19 19 C 1.36582 * 119.99814 * 179.72935 * 18 17 15 20 20 C 1.39810 * 120.00323 * 0.24859 * 19 18 17 21 21 C 1.47585 * 119.99898 * 180.02562 * 20 19 18 22 22 C 1.35942 * 126.59418 * 179.71503 * 21 20 19 23 23 N 1.34035 * 107.49336 * 179.84019 * 22 21 20 24 24 C 1.30414 * 108.92617 * 0.43550 * 23 22 21 25 25 O 1.33936 * 109.06989 * 359.72412 * 24 23 22 26 26 C 1.39810 * 119.99857 * 0.02562 * 20 19 18 27 27 C 1.36580 * 120.00004 * 0.02562 * 26 20 19 28 28 H 1.09003 * 109.46758 * 299.99834 * 1 2 3 29 29 H 1.08998 * 109.47043 * 59.99330 * 1 2 3 30 30 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46767 * 240.00681 * 2 1 3 32 32 H 1.09001 * 109.47450 * 185.42175 * 3 2 1 33 33 H 1.09004 * 109.47848 * 305.41690 * 3 2 1 34 34 H 1.09004 * 109.47108 * 65.42249 * 3 2 1 35 35 H 1.08999 * 109.47491 * 54.45020 * 4 2 1 36 36 H 1.09009 * 109.47091 * 294.45518 * 4 2 1 37 37 H 1.09005 * 109.46741 * 38.96012 * 6 5 4 38 38 H 1.09001 * 109.47211 * 158.95643 * 6 5 4 39 39 H 0.96995 * 119.99808 * 179.97438 * 10 9 7 40 40 H 1.07994 * 120.00147 * 359.97438 * 18 17 15 41 41 H 1.08003 * 120.00250 * 180.27968 * 19 18 17 42 42 H 1.07997 * 126.25695 * 359.97438 * 22 21 20 43 43 H 1.07999 * 125.46552 * 179.69420 * 24 23 22 44 44 H 1.07996 * 119.99439 * 179.97438 * 26 20 19 45 45 H 1.08004 * 119.99686 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.4990 -0.8379 1.1842 6 6 4.1133 -1.9445 0.4464 7 6 4.1124 -3.1828 1.3052 8 1 3.6962 -3.1488 2.3012 9 6 4.6438 -4.3588 0.8198 10 7 4.6434 -5.4393 1.5696 11 14 5.3643 -4.4173 -0.9026 12 1 6.8089 -4.0779 -0.8467 13 1 5.1980 -5.7826 -1.4626 14 1 4.6588 -3.4381 -1.7678 15 6 4.2761 0.0728 1.8033 16 8 3.7707 0.9224 2.5112 17 6 5.7403 0.0389 1.6219 18 6 6.4808 1.2229 1.6902 19 6 7.8366 1.1907 1.5278 20 6 8.4833 -0.0255 1.2882 21 6 9.9483 -0.0602 1.1134 22 6 10.7109 -1.1614 0.8814 23 7 11.9846 -0.7559 0.7825 24 6 12.0316 0.5362 0.9525 25 8 10.7906 0.9958 1.1590 26 6 7.7421 -1.2086 1.2143 27 6 6.3863 -1.1764 1.3756 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1257 1.4440 -0.0971 33 1 1.5997 1.9836 -0.8375 34 1 1.7581 1.9275 0.9346 35 1 1.5980 -1.7163 1.3001 36 1 1.7601 -0.1535 2.1364 37 1 3.5451 -2.1336 -0.4644 38 1 5.1392 -1.6830 0.1869 39 1 5.0169 -6.2667 1.2279 40 1 5.9813 2.1623 1.8752 41 1 8.4092 2.1046 1.5850 42 1 10.3552 -2.1771 0.7909 43 1 12.9275 1.1389 0.9309 44 1 8.2417 -2.1480 1.0288 45 1 5.8138 -2.0903 1.3180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745382431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:22 Heat of formation + Delta-G solvation = 33.712679 kcal Electronic energy + Delta-G solvation = -28057.844250 eV Core-core repulsion = 24236.045848 eV Total energy + Delta-G solvation = -3821.798402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.35860 -40.17183 -38.22561 -36.09937 -34.88346 -34.63886 -32.57088 -32.31856 -30.98185 -28.87107 -28.34832 -26.90488 -26.06188 -23.90174 -23.32113 -22.68148 -21.63460 -21.34469 -20.08261 -18.96721 -18.03970 -17.19097 -16.79843 -16.66569 -16.31163 -15.84532 -15.07114 -14.70338 -14.57350 -14.34285 -14.12326 -13.93272 -13.84079 -13.40810 -13.34866 -13.07529 -12.75332 -12.52935 -12.35432 -12.26118 -11.99080 -11.52221 -11.50617 -11.49710 -11.14578 -11.01414 -10.95060 -10.68052 -10.66899 -10.36072 -10.28665 -10.17994 -9.84847 -9.69624 -9.22765 -8.98712 -8.67510 -8.03454 -7.80014 -6.40698 -4.44541 0.48835 1.63209 1.80449 2.56696 2.62480 3.04367 3.14977 3.17108 3.33709 3.69345 4.09284 4.09537 4.12288 4.60756 4.86622 4.94449 5.03038 5.08841 5.11250 5.18494 5.22480 5.36912 5.43026 5.58357 5.61419 5.81264 5.85981 5.91425 5.92608 6.03121 6.07666 6.18372 6.19192 6.24248 6.26945 6.28840 6.37044 6.48420 6.54437 6.57530 6.65949 6.67156 6.74365 7.09039 7.16833 7.30474 7.55638 7.96422 8.26425 8.66893 8.78348 9.15992 10.70470 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.004349 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.244380 B = 6436.046305 C = 8341.931346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.138 4.138 4 C 0.122 3.878 5 N -0.579 5.579 6 C 0.177 3.823 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.876 5.876 11 Si 0.858 3.142 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.260 1.260 15 C 0.558 3.442 16 O -0.560 6.560 17 C -0.116 4.116 18 C -0.067 4.067 19 C -0.119 4.119 20 C -0.010 4.010 21 C 0.008 3.992 22 C -0.026 4.026 23 N -0.485 5.485 24 C 0.163 3.837 25 O -0.199 6.199 26 C -0.107 4.107 27 C -0.101 4.101 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.270 0.730 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.188 0.812 43 H 0.250 0.750 44 H 0.131 0.869 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 11.093 -4.291 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C -0.001 4.001 5 N -0.307 5.307 6 C 0.056 3.944 7 C -0.585 4.585 8 H 0.102 0.898 9 C -0.123 4.123 10 N -0.512 5.512 11 Si 0.683 3.317 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.184 1.184 15 C 0.347 3.653 16 O -0.441 6.441 17 C -0.119 4.119 18 C -0.086 4.086 19 C -0.137 4.137 20 C -0.011 4.011 21 C -0.045 4.045 22 C -0.166 4.166 23 N -0.213 5.213 24 C -0.062 4.062 25 O -0.085 6.085 26 C -0.125 4.125 27 C -0.117 4.117 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.205 0.795 43 H 0.265 0.735 44 H 0.149 0.851 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.773 10.976 -4.031 13.040 hybrid contribution 0.108 0.078 -0.819 0.829 sum 5.880 11.055 -4.849 13.427 Atomic orbital electron populations 1.21745 0.94963 1.01770 1.01457 1.21505 0.95576 0.96772 0.99422 1.21762 1.00825 0.95731 1.01222 1.21459 0.79938 1.01148 0.97567 1.47711 1.06003 1.25970 1.51024 1.20723 0.95393 0.85354 0.92932 1.21331 1.41664 0.92411 1.03106 0.89811 1.24909 0.95071 0.95256 0.97113 1.69876 1.43559 1.01007 1.36762 0.87116 0.80655 0.78712 0.85218 1.19093 1.20409 1.18425 1.18120 0.86261 0.81156 0.79760 1.90695 1.75229 1.38773 1.39392 1.20207 0.94072 0.94377 1.03261 1.20841 0.93158 0.97949 0.96641 1.20786 0.94516 0.96796 1.01584 1.17861 0.85652 0.95051 1.02506 1.21620 0.91320 0.85118 1.06424 1.23412 0.87728 1.00341 1.05081 1.70323 1.22049 1.11054 1.17878 1.28085 0.86677 0.90982 1.00485 1.84464 1.18306 1.37174 1.68604 1.20896 0.94163 0.96509 1.00947 1.23140 0.94765 1.01635 0.92211 0.92691 0.92923 0.92475 0.91141 0.93213 0.93616 0.92337 0.89972 0.90201 0.95003 0.92541 0.91927 0.84950 0.85480 0.79454 0.73458 0.85076 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.11 -1.68 3.12 -90.62 -0.28 -1.96 16 3 C -0.14 -2.03 8.27 37.15 0.31 -1.72 16 4 C 0.12 2.15 4.97 -4.05 -0.02 2.13 16 5 N -0.58 -11.43 2.28 -176.27 -0.40 -11.84 16 6 C 0.18 3.69 3.74 -5.19 -0.02 3.67 16 7 C -0.55 -13.36 8.10 -34.44 -0.28 -13.64 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.08 2.06 5.36 -17.82 -0.10 1.97 16 10 N -0.88 -23.76 13.96 55.43 0.77 -22.99 16 11 Si 0.86 18.26 27.34 -169.99 -4.65 13.61 16 12 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 15 C 0.56 11.24 6.10 -12.45 -0.08 11.17 16 16 O -0.56 -12.06 15.69 5.28 0.08 -11.98 16 17 C -0.12 -2.15 5.60 -104.91 -0.59 -2.74 16 18 C -0.07 -1.07 9.53 -39.59 -0.38 -1.45 16 19 C -0.12 -1.72 9.67 -39.59 -0.38 -2.10 16 20 C -0.01 -0.15 5.88 -104.91 -0.62 -0.76 16 21 C 0.01 0.11 7.06 -36.59 -0.26 -0.15 16 22 C -0.03 -0.35 11.29 -17.41 -0.20 -0.55 16 23 N -0.49 -6.40 11.27 -14.67 -0.17 -6.57 16 24 C 0.16 1.67 13.21 52.16 0.69 2.36 16 25 O -0.20 -2.48 10.57 4.28 0.05 -2.44 16 26 C -0.11 -1.75 9.51 -39.59 -0.38 -2.12 16 27 C -0.10 -1.87 7.42 -39.59 -0.29 -2.17 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 32 H 0.05 0.80 7.03 -51.93 -0.36 0.44 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 36 H 0.08 1.44 7.19 -51.92 -0.37 1.07 16 37 H 0.03 0.66 7.01 -51.93 -0.36 0.30 16 38 H 0.06 1.16 3.39 -52.57 -0.18 0.98 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.13 1.96 7.91 -52.49 -0.42 1.55 16 41 H 0.13 1.55 7.93 -52.48 -0.42 1.14 16 42 H 0.19 2.27 7.29 -52.49 -0.38 1.88 16 43 H 0.25 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.13 1.93 7.02 -52.49 -0.37 1.56 16 45 H 0.20 4.23 2.91 -52.48 -0.15 4.07 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -29.27 368.79 -7.26 -36.53 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.98 Total: 9.57 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.52 Total: -9.46 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.21 Total: -41.39 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.13 Total: -14.41 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.65 Total: 13.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.27 -7.26 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.239 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds