Wall clock time and date at job start Tue Mar 31 2020 16:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47054 * 2 1 4 4 C 1.52993 * 109.47471 * 120.00745 * 2 1 3 5 5 N 1.46499 * 109.47224 * 174.45922 * 4 2 1 6 6 C 1.46500 * 119.99823 * 275.75615 * 5 4 2 7 7 C 1.50698 * 109.47479 * 278.96169 * 6 5 4 8 8 H 1.08000 * 119.99827 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00148 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99976 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99945 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46889 * 90.00290 * 11 9 7 13 13 H 1.48501 * 109.47128 * 209.99931 * 11 9 7 14 14 H 1.48495 * 109.47072 * 330.00263 * 11 9 7 15 15 C 1.34775 * 120.00272 * 95.76010 * 5 4 2 16 16 O 1.21592 * 120.00062 * 6.41310 * 15 5 4 17 17 C 1.47583 * 120.00253 * 186.41459 * 15 5 4 18 18 C 1.39812 * 120.00192 * 150.07188 * 17 15 5 19 19 C 1.36582 * 119.99814 * 179.72935 * 18 17 15 20 20 C 1.39810 * 120.00323 * 0.24859 * 19 18 17 21 21 C 1.47585 * 119.99898 * 180.02562 * 20 19 18 22 22 C 1.35942 * 126.59418 * 179.71503 * 21 20 19 23 23 N 1.34035 * 107.49336 * 179.84019 * 22 21 20 24 24 C 1.30414 * 108.92617 * 0.43550 * 23 22 21 25 25 O 1.33936 * 109.06989 * 359.72412 * 24 23 22 26 26 C 1.39810 * 119.99857 * 0.02562 * 20 19 18 27 27 C 1.36580 * 120.00004 * 0.02562 * 26 20 19 28 28 H 1.09003 * 109.46758 * 299.99834 * 1 2 3 29 29 H 1.08998 * 109.47043 * 59.99330 * 1 2 3 30 30 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46767 * 240.00681 * 2 1 3 32 32 H 1.09001 * 109.47450 * 185.42175 * 3 2 1 33 33 H 1.09004 * 109.47848 * 305.41690 * 3 2 1 34 34 H 1.09004 * 109.47108 * 65.42249 * 3 2 1 35 35 H 1.08999 * 109.47491 * 54.45020 * 4 2 1 36 36 H 1.09009 * 109.47091 * 294.45518 * 4 2 1 37 37 H 1.09005 * 109.46741 * 38.96012 * 6 5 4 38 38 H 1.09001 * 109.47211 * 158.95643 * 6 5 4 39 39 H 0.96995 * 119.99808 * 179.97438 * 10 9 7 40 40 H 1.07994 * 120.00147 * 359.97438 * 18 17 15 41 41 H 1.08003 * 120.00250 * 180.27968 * 19 18 17 42 42 H 1.07997 * 126.25695 * 359.97438 * 22 21 20 43 43 H 1.07999 * 125.46552 * 179.69420 * 24 23 22 44 44 H 1.07996 * 119.99439 * 179.97438 * 26 20 19 45 45 H 1.08004 * 119.99686 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.4990 -0.8379 1.1842 6 6 4.1133 -1.9445 0.4464 7 6 4.1124 -3.1828 1.3052 8 1 3.6962 -3.1488 2.3012 9 6 4.6438 -4.3588 0.8198 10 7 4.6434 -5.4393 1.5696 11 14 5.3643 -4.4173 -0.9026 12 1 6.8089 -4.0779 -0.8467 13 1 5.1980 -5.7826 -1.4626 14 1 4.6588 -3.4381 -1.7678 15 6 4.2761 0.0728 1.8033 16 8 3.7707 0.9224 2.5112 17 6 5.7403 0.0389 1.6219 18 6 6.4808 1.2229 1.6902 19 6 7.8366 1.1907 1.5278 20 6 8.4833 -0.0255 1.2882 21 6 9.9483 -0.0602 1.1134 22 6 10.7109 -1.1614 0.8814 23 7 11.9846 -0.7559 0.7825 24 6 12.0316 0.5362 0.9525 25 8 10.7906 0.9958 1.1590 26 6 7.7421 -1.2086 1.2143 27 6 6.3863 -1.1764 1.3756 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1257 1.4440 -0.0971 33 1 1.5997 1.9836 -0.8375 34 1 1.7581 1.9275 0.9346 35 1 1.5980 -1.7163 1.3001 36 1 1.7601 -0.1535 2.1364 37 1 3.5451 -2.1336 -0.4644 38 1 5.1392 -1.6830 0.1869 39 1 5.0169 -6.2667 1.2279 40 1 5.9813 2.1623 1.8752 41 1 8.4092 2.1046 1.5850 42 1 10.3552 -2.1771 0.7909 43 1 12.9275 1.1389 0.9309 44 1 8.2417 -2.1480 1.0288 45 1 5.8138 -2.0903 1.3180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745382431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:21 Heat of formation + Delta-G solvation = 15.971177 kcal Electronic energy + Delta-G solvation = -28058.613579 eV Core-core repulsion = 24236.045848 eV Total energy + Delta-G solvation = -3822.567731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.29891 -41.63315 -39.56978 -37.59333 -36.10892 -35.83154 -34.37483 -33.53249 -32.28044 -30.12412 -29.96569 -28.03978 -27.37407 -25.21849 -24.49444 -24.25655 -22.76934 -22.46865 -21.35080 -20.41333 -19.12200 -19.00903 -18.27664 -17.63120 -17.60591 -17.12846 -16.54687 -16.19967 -15.96763 -15.59738 -15.34533 -15.22152 -15.10753 -14.69625 -14.60514 -14.48145 -14.24192 -13.86154 -13.70131 -13.57671 -13.17612 -12.98899 -12.77384 -12.66081 -12.46858 -12.46487 -12.40771 -11.92449 -11.84152 -11.78685 -11.66157 -11.58579 -11.54619 -11.00534 -10.87984 -10.68587 -10.03498 -9.46607 -9.12710 -8.35481 -6.44117 -0.68797 0.36190 0.71435 1.36851 1.40781 1.48845 1.62180 1.64385 1.92062 2.20481 2.29476 2.77625 2.97404 3.33518 3.51046 3.61487 3.87563 3.92067 3.94312 4.00163 4.03752 4.17210 4.29455 4.34997 4.56859 4.58969 4.64023 4.67284 4.77243 4.78366 4.81733 4.84511 4.94561 5.00093 5.02365 5.05524 5.19430 5.25179 5.32793 5.33900 5.34230 5.40459 5.41866 5.44326 5.68329 5.79197 6.11812 6.55721 6.63452 6.64930 7.14348 7.26089 8.79738 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.004349 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.244380 B = 6436.046305 C = 8341.931346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.131 4.131 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.187 3.813 7 C -0.542 4.542 8 H 0.034 0.966 9 C 0.035 3.965 10 N -0.928 5.928 11 Si 0.916 3.084 12 H -0.246 1.246 13 H -0.282 1.282 14 H -0.242 1.242 15 C 0.553 3.447 16 O -0.582 6.582 17 C -0.141 4.141 18 C -0.062 4.062 19 C -0.109 4.109 20 C 0.003 3.997 21 C -0.018 4.018 22 C -0.024 4.024 23 N -0.521 5.521 24 C 0.195 3.805 25 O -0.202 6.202 26 C -0.112 4.112 27 C -0.116 4.116 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.272 0.728 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.194 0.806 43 H 0.302 0.698 44 H 0.143 0.857 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 13.288 -6.358 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.188 4.188 4 C -0.005 4.005 5 N -0.312 5.312 6 C 0.066 3.934 7 C -0.580 4.580 8 H 0.052 0.948 9 C -0.166 4.166 10 N -0.566 5.566 11 Si 0.738 3.262 12 H -0.170 1.170 13 H -0.208 1.208 14 H -0.165 1.165 15 C 0.344 3.656 16 O -0.465 6.465 17 C -0.144 4.144 18 C -0.081 4.081 19 C -0.127 4.127 20 C 0.003 3.997 21 C -0.071 4.071 22 C -0.163 4.163 23 N -0.249 5.249 24 C -0.030 4.030 25 O -0.089 6.089 26 C -0.130 4.130 27 C -0.134 4.134 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.161 0.839 41 H 0.174 0.826 42 H 0.211 0.789 43 H 0.317 0.683 44 H 0.160 0.840 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.994 13.181 -6.102 16.580 hybrid contribution -0.420 -0.535 -0.059 0.682 sum 7.574 12.646 -6.161 15.977 Atomic orbital electron populations 1.21714 0.92668 1.02328 1.02677 1.21458 0.97421 0.96416 0.97359 1.21691 0.99716 0.95660 1.01748 1.21584 0.79100 1.00800 0.98992 1.47788 1.06852 1.25647 1.50894 1.20554 0.96481 0.84137 0.92260 1.21325 1.40882 0.94295 1.01487 0.94760 1.25659 0.95247 0.94477 1.01208 1.70022 1.45554 1.01892 1.39141 0.86176 0.81121 0.78808 0.80138 1.16959 1.20791 1.16506 1.18470 0.87197 0.80772 0.79193 1.90662 1.75879 1.39645 1.40266 1.20176 0.93127 0.95496 1.05632 1.20967 0.93773 0.97361 0.95951 1.21060 0.93882 0.97726 1.00033 1.17916 0.86574 0.94631 1.00627 1.21333 0.90915 0.85786 1.09020 1.23642 0.88159 1.00735 1.03777 1.70378 1.21752 1.12721 1.20016 1.29354 0.87080 0.90619 0.95906 1.84473 1.18881 1.36730 1.68789 1.20951 0.93303 0.97770 1.01011 1.22780 0.95748 1.00599 0.94240 0.92336 0.90808 0.92308 0.91387 0.95046 0.91050 0.93325 0.91140 0.91165 0.94404 0.91001 0.91859 0.83937 0.82602 0.78899 0.68306 0.83964 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 2 C -0.11 -3.14 3.12 -10.80 -0.03 -3.17 16 3 C -0.13 -3.75 8.27 71.98 0.60 -3.15 16 4 C 0.12 4.31 4.97 86.38 0.43 4.74 16 5 N -0.58 -23.94 2.28 -829.86 -1.89 -25.84 16 6 C 0.19 7.98 3.74 85.63 0.32 8.30 16 7 C -0.54 -27.81 8.10 25.60 0.21 -27.60 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C 0.04 1.82 5.36 84.65 0.45 2.28 16 10 N -0.93 -52.55 13.96 21.45 0.30 -52.25 16 11 Si 0.92 37.50 27.34 68.60 1.88 39.37 16 12 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 14 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 15 C 0.55 23.01 6.10 86.71 0.53 23.54 16 16 O -0.58 -25.83 15.69 -4.01 -0.06 -25.89 16 17 C -0.14 -5.29 5.60 -20.05 -0.11 -5.40 16 18 C -0.06 -1.91 9.53 22.26 0.21 -1.69 16 19 C -0.11 -2.91 9.67 22.26 0.22 -2.69 16 20 C 0.00 0.10 5.88 -20.05 -0.12 -0.02 16 21 C -0.02 -0.45 7.06 24.21 0.17 -0.28 16 22 C -0.02 -0.60 11.29 83.82 0.95 0.34 16 23 N -0.52 -12.15 11.27 -315.05 -3.55 -15.70 16 24 C 0.19 3.15 13.21 130.45 1.72 4.87 16 25 O -0.20 -4.27 10.57 -7.60 -0.08 -4.35 16 26 C -0.11 -3.58 9.51 22.26 0.21 -3.37 16 27 C -0.12 -4.38 7.42 22.26 0.17 -4.21 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.07 2.04 7.96 -2.38 -0.02 2.02 16 32 H 0.03 1.00 7.03 -2.39 -0.02 0.98 16 33 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 36 H 0.07 2.67 7.19 -2.38 -0.02 2.66 16 37 H 0.04 1.57 7.01 -2.38 -0.02 1.55 16 38 H 0.07 2.95 3.39 -2.99 -0.01 2.94 16 39 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.14 4.06 7.91 -2.91 -0.02 4.03 16 41 H 0.16 3.24 7.93 -2.91 -0.02 3.22 16 42 H 0.19 4.37 7.29 -2.91 -0.02 4.35 16 43 H 0.30 1.01 8.06 -2.91 -0.02 0.98 16 44 H 0.14 4.08 7.02 -2.91 -0.02 4.06 16 45 H 0.18 7.62 2.91 -2.91 -0.01 7.61 16 Total: -1.00 -66.98 368.79 4.12 -62.86 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.95 Total: 31.79 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 6.58 Total: -9.99 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -5.14 Total: -93.79 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.14 Total: -30.24 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 1.88 Total: 39.37 kcal Total: -66.98 4.12 -62.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.831 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds