Wall clock time and date at job start Tue Mar 31 2020 15:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46873 * 2 1 4 4 C 1.50698 * 109.46999 * 119.99730 * 2 1 3 5 5 O 1.34259 * 126.52813 * 300.16945 * 4 2 1 6 6 C 1.34051 * 108.22851 * 180.28584 * 5 4 2 7 7 N 1.29928 * 109.24345 * 359.73013 * 6 5 4 8 8 C 1.36068 * 108.47699 * 0.02562 * 7 6 5 9 9 C 1.47426 * 126.44861 * 180.02562 * 8 7 6 10 10 O 1.21610 * 119.99862 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99900 * 0.02605 * 9 8 7 12 12 C 1.46496 * 119.99613 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47581 * 34.99768 * 12 11 9 14 14 C 1.53006 * 109.46987 * 154.99881 * 12 11 9 15 15 C 1.50697 * 109.46750 * 294.99368 * 14 12 11 16 16 H 1.08002 * 120.00419 * 0.02562 * 15 14 12 17 17 C 1.37885 * 119.99934 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99622 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00102 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46985 * 60.00116 * 19 17 15 21 21 H 1.48494 * 109.46927 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46996 * 300.00315 * 19 17 15 23 23 C 1.50702 * 109.47045 * 274.99504 * 12 11 9 24 24 C 1.38238 * 119.99758 * 319.72905 * 23 12 11 25 25 C 1.38238 * 119.99798 * 179.81003 * 24 23 12 26 26 C 1.38236 * 119.99643 * 0.39524 * 25 24 23 27 27 C 1.38235 * 120.00634 * 359.86032 * 26 25 24 28 28 C 1.38229 * 119.99958 * 140.00389 * 23 12 11 29 29 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47493 * 300.00207 * 1 2 3 31 31 H 1.09001 * 109.47136 * 60.00354 * 1 2 3 32 32 H 1.08998 * 109.47493 * 239.99793 * 2 1 3 33 33 H 1.08997 * 109.47325 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46950 * 299.99759 * 3 2 1 35 35 H 1.08998 * 109.47230 * 59.99633 * 3 2 1 36 36 H 1.08001 * 125.37581 * 179.70838 * 6 5 4 37 37 H 0.96996 * 119.99871 * 359.97438 * 11 9 8 38 38 H 1.08992 * 109.47183 * 54.99350 * 14 12 11 39 39 H 1.09000 * 109.46699 * 174.99922 * 14 12 11 40 40 H 0.97000 * 119.99925 * 179.97438 * 18 17 15 41 41 H 1.07991 * 120.00004 * 359.97438 * 24 23 12 42 42 H 1.07993 * 120.00085 * 180.23306 * 25 24 23 43 43 H 1.08001 * 119.99695 * 179.83373 * 26 25 24 44 44 H 1.07994 * 120.00165 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00374 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.7875 -0.3696 2.5058 6 6 2.4163 -1.2457 3.3021 7 7 3.0375 -2.1208 2.5696 8 6 2.8183 -1.8209 1.2606 9 6 3.3384 -2.5576 0.0943 10 8 3.0680 -2.1839 -1.0309 11 7 4.1136 -3.6452 0.2751 12 6 4.6308 -4.3769 -0.8838 13 1 4.8518 -3.6748 -1.6878 14 6 5.9093 -5.1192 -0.4893 15 6 6.9816 -4.1206 -0.1373 16 1 6.7721 -3.0623 -0.1894 17 6 8.2299 -4.5579 0.2522 18 7 8.4847 -5.8465 0.3161 19 14 9.5589 -3.3201 0.6892 20 1 9.1008 -2.4830 1.8271 21 1 10.7996 -4.0405 1.0720 22 1 9.8327 -2.4527 -0.4846 23 6 3.5983 -5.3693 -1.3531 24 6 2.8614 -6.0883 -0.4306 25 6 1.9115 -6.9957 -0.8611 26 6 1.7043 -7.1900 -2.2139 27 6 2.4449 -6.4748 -3.1364 28 6 3.3921 -5.5646 -2.7059 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.4081 -1.2269 4.3819 37 1 4.3295 -3.9430 1.1726 38 1 5.7086 -5.7557 0.3724 39 1 6.2451 -5.7336 -1.3246 40 1 9.3630 -6.1542 0.5898 41 1 3.0259 -5.9392 0.6262 42 1 1.3331 -7.5547 -0.1405 43 1 0.9641 -7.9009 -2.5502 44 1 2.2833 -6.6270 -4.1933 45 1 3.9707 -5.0058 -3.4266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749164684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:05 Heat of formation + Delta-G solvation = -7.066671 kcal Electronic energy + Delta-G solvation = -27988.811273 eV Core-core repulsion = 24165.244546 eV Total energy + Delta-G solvation = -3823.566727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.40227 -39.55272 -38.34539 -35.87101 -35.09309 -34.67161 -32.68308 -31.10890 -30.43792 -29.57828 -28.72564 -27.33379 -25.25996 -23.71453 -23.36515 -22.27047 -21.92140 -20.86162 -20.13296 -19.70571 -17.89092 -16.82372 -16.69753 -16.17993 -16.10413 -15.55036 -15.03255 -14.89050 -14.80827 -14.48553 -14.08994 -14.04283 -13.68549 -13.29937 -13.19318 -12.99787 -12.71757 -12.49346 -12.38050 -12.08212 -11.82742 -11.57007 -11.41197 -11.26340 -11.17939 -11.08442 -10.90216 -10.69730 -10.64330 -10.61046 -10.42039 -9.75785 -9.56140 -9.27714 -8.91582 -8.52093 -8.42651 -8.38899 -8.16901 -6.05431 -4.08498 1.20386 1.79520 1.82662 2.19072 2.58081 3.31886 3.36095 3.39491 3.61753 3.68313 4.12117 4.27178 4.43317 4.50225 4.77256 4.94060 5.12709 5.21330 5.28568 5.30151 5.31866 5.39776 5.44553 5.46575 5.56681 5.62959 5.69032 5.75768 5.90617 5.93397 5.95773 6.05973 6.10949 6.19134 6.26818 6.37432 6.46022 6.59140 6.86890 6.87395 6.91599 7.13023 7.42398 7.48503 7.52435 7.65247 7.90856 8.15134 8.28995 8.69437 8.96405 9.56166 11.05168 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007744 B = 0.005059 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.782214 B = 5533.215816 C = 7951.362552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C -0.146 4.146 4 C 0.043 3.957 5 O -0.201 6.201 6 C 0.165 3.835 7 N -0.456 5.456 8 C -0.065 4.065 9 C 0.598 3.402 10 O -0.546 6.546 11 N -0.678 5.678 12 C 0.183 3.817 13 H 0.089 0.911 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.072 4.072 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.253 0.747 37 H 0.410 0.590 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.619 7.448 1.727 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 C -0.203 4.203 4 C -0.014 4.014 5 O -0.087 6.087 6 C -0.063 4.063 7 N -0.185 5.185 8 C -0.185 4.185 9 C 0.382 3.618 10 O -0.425 6.425 11 N -0.326 5.326 12 C 0.079 3.921 13 H 0.107 0.893 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.073 4.073 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.268 0.732 37 H 0.246 0.754 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.275 7.059 1.214 17.782 hybrid contribution 0.653 0.861 0.891 1.401 sum -15.622 7.921 2.105 17.641 Atomic orbital electron populations 1.21840 0.93432 1.02513 1.02406 1.20311 0.96475 0.96315 0.91618 1.21847 1.01833 0.94220 1.02393 1.23736 0.97880 0.95772 0.83964 1.84321 1.58948 1.49193 1.16265 1.27980 0.93566 0.85978 0.98800 1.70788 1.20456 1.25714 1.01498 1.21686 1.05523 0.99113 0.92175 1.16721 0.78697 0.80408 0.85939 1.90679 1.60293 1.68241 1.23281 1.45805 1.48429 1.27073 1.11259 1.20334 0.92210 0.91611 0.87925 0.89269 1.19393 0.88619 0.95502 0.97792 1.21080 0.96066 0.92883 1.45755 0.92515 1.24964 0.98487 0.95092 0.95460 1.69947 1.22404 1.13101 1.47628 0.86660 0.81088 0.81344 0.78963 1.20263 1.21286 1.20231 1.20525 0.96359 0.96983 0.93455 1.20942 0.95970 0.96058 0.99518 1.21039 0.98740 0.98856 0.95670 1.20995 1.00427 1.00436 0.93397 1.21033 0.96877 0.97138 0.99082 1.21009 0.97881 0.98360 0.95301 0.92203 0.92441 0.91266 0.84572 0.92044 0.91239 0.92446 0.73181 0.75404 0.95632 0.94584 0.92835 0.86524 0.86760 0.86858 0.86594 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 37.16 0.34 -1.10 16 2 C -0.03 -0.36 3.24 -91.77 -0.30 -0.65 16 3 C -0.15 -1.51 9.18 37.16 0.34 -1.17 16 4 C 0.04 0.61 5.95 -35.08 -0.21 0.40 16 5 O -0.20 -2.47 10.73 6.50 0.07 -2.40 16 6 C 0.17 1.87 13.19 51.96 0.69 2.56 16 7 N -0.46 -7.04 11.06 -11.48 -0.13 -7.17 16 8 C -0.06 -1.09 6.99 -83.02 -0.58 -1.67 16 9 C 0.60 11.50 7.77 -12.52 -0.10 11.40 16 10 O -0.55 -11.17 14.13 5.27 0.07 -11.10 16 11 N -0.68 -13.40 4.04 -56.01 -0.23 -13.63 16 12 C 0.18 3.84 2.11 -69.08 -0.15 3.69 16 13 H 0.09 1.99 7.44 -51.93 -0.39 1.60 16 14 C 0.02 0.59 4.49 -27.88 -0.13 0.47 16 15 C -0.52 -14.10 8.84 -34.44 -0.30 -14.40 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.07 -1.37 4.91 -104.62 -0.51 -1.88 16 24 C -0.11 -1.88 9.32 -39.58 -0.37 -2.24 16 25 C -0.12 -1.92 10.05 -39.58 -0.40 -2.31 16 26 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 27 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 28 C -0.11 -1.87 9.67 -39.58 -0.38 -2.25 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.99 5.52 -51.93 -0.29 1.70 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.25 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.41 8.07 8.33 -40.82 -0.34 7.73 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.12 2.00 7.73 -52.49 -0.41 1.60 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.12 2.00 8.04 -52.48 -0.42 1.57 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -32.15 385.00 -8.09 -40.25 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.46 Total: 9.12 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -2.95 Total: -12.14 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.38 Total: -46.03 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.14 Total: -13.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.15 -8.09 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749164684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.179 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds