Wall clock time and date at job start Tue Mar 31 2020 15:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46873 * 2 1 4 4 C 1.50698 * 109.46999 * 119.99730 * 2 1 3 5 5 O 1.34259 * 126.52813 * 300.16945 * 4 2 1 6 6 C 1.34051 * 108.22851 * 180.28584 * 5 4 2 7 7 N 1.29928 * 109.24345 * 359.73013 * 6 5 4 8 8 C 1.36068 * 108.47699 * 0.02562 * 7 6 5 9 9 C 1.47426 * 126.44861 * 180.02562 * 8 7 6 10 10 O 1.21610 * 119.99862 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99900 * 0.02605 * 9 8 7 12 12 C 1.46496 * 119.99613 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47581 * 34.99768 * 12 11 9 14 14 C 1.53006 * 109.46987 * 154.99881 * 12 11 9 15 15 C 1.50697 * 109.46750 * 294.99368 * 14 12 11 16 16 H 1.08002 * 120.00419 * 0.02562 * 15 14 12 17 17 C 1.37885 * 119.99934 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99622 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00102 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46985 * 60.00116 * 19 17 15 21 21 H 1.48494 * 109.46927 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46996 * 300.00315 * 19 17 15 23 23 C 1.50702 * 109.47045 * 274.99504 * 12 11 9 24 24 C 1.38238 * 119.99758 * 319.72905 * 23 12 11 25 25 C 1.38238 * 119.99798 * 179.81003 * 24 23 12 26 26 C 1.38236 * 119.99643 * 0.39524 * 25 24 23 27 27 C 1.38235 * 120.00634 * 359.86032 * 26 25 24 28 28 C 1.38229 * 119.99958 * 140.00389 * 23 12 11 29 29 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47493 * 300.00207 * 1 2 3 31 31 H 1.09001 * 109.47136 * 60.00354 * 1 2 3 32 32 H 1.08998 * 109.47493 * 239.99793 * 2 1 3 33 33 H 1.08997 * 109.47325 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46950 * 299.99759 * 3 2 1 35 35 H 1.08998 * 109.47230 * 59.99633 * 3 2 1 36 36 H 1.08001 * 125.37581 * 179.70838 * 6 5 4 37 37 H 0.96996 * 119.99871 * 359.97438 * 11 9 8 38 38 H 1.08992 * 109.47183 * 54.99350 * 14 12 11 39 39 H 1.09000 * 109.46699 * 174.99922 * 14 12 11 40 40 H 0.97000 * 119.99925 * 179.97438 * 18 17 15 41 41 H 1.07991 * 120.00004 * 359.97438 * 24 23 12 42 42 H 1.07993 * 120.00085 * 180.23306 * 25 24 23 43 43 H 1.08001 * 119.99695 * 179.83373 * 26 25 24 44 44 H 1.07994 * 120.00165 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00374 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.7875 -0.3696 2.5058 6 6 2.4163 -1.2457 3.3021 7 7 3.0375 -2.1208 2.5696 8 6 2.8183 -1.8209 1.2606 9 6 3.3384 -2.5576 0.0943 10 8 3.0680 -2.1839 -1.0309 11 7 4.1136 -3.6452 0.2751 12 6 4.6308 -4.3769 -0.8838 13 1 4.8518 -3.6748 -1.6878 14 6 5.9093 -5.1192 -0.4893 15 6 6.9816 -4.1206 -0.1373 16 1 6.7721 -3.0623 -0.1894 17 6 8.2299 -4.5579 0.2522 18 7 8.4847 -5.8465 0.3161 19 14 9.5589 -3.3201 0.6892 20 1 9.1008 -2.4830 1.8271 21 1 10.7996 -4.0405 1.0720 22 1 9.8327 -2.4527 -0.4846 23 6 3.5983 -5.3693 -1.3531 24 6 2.8614 -6.0883 -0.4306 25 6 1.9115 -6.9957 -0.8611 26 6 1.7043 -7.1900 -2.2139 27 6 2.4449 -6.4748 -3.1364 28 6 3.3921 -5.5646 -2.7059 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.4081 -1.2269 4.3819 37 1 4.3295 -3.9430 1.1726 38 1 5.7086 -5.7557 0.3724 39 1 6.2451 -5.7336 -1.3246 40 1 9.3630 -6.1542 0.5898 41 1 3.0259 -5.9392 0.6262 42 1 1.3331 -7.5547 -0.1405 43 1 0.9641 -7.9009 -2.5502 44 1 2.2833 -6.6270 -4.1933 45 1 3.9707 -5.0058 -3.4266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749164684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:04 Heat of formation + Delta-G solvation = -27.682907 kcal Electronic energy + Delta-G solvation = -27989.705260 eV Core-core repulsion = 24165.244546 eV Total energy + Delta-G solvation = -3824.460714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.46425 -41.03077 -39.70555 -37.06355 -36.48778 -35.79647 -34.72891 -32.58492 -31.71548 -30.74067 -30.44734 -28.13522 -27.00666 -25.12573 -24.32502 -23.81903 -23.35835 -22.10655 -21.28745 -21.19530 -19.19494 -18.61794 -17.81189 -17.69184 -17.36367 -16.98384 -16.51343 -16.25975 -16.02018 -15.82667 -15.50002 -15.34996 -14.79640 -14.63021 -14.45477 -14.20702 -14.14796 -14.10015 -13.69902 -13.47950 -13.11522 -12.95934 -12.72433 -12.67751 -12.51477 -12.41877 -12.26374 -12.18236 -12.11435 -11.88538 -11.73395 -11.61612 -11.38120 -10.99624 -10.60154 -10.17367 -9.88109 -9.76962 -9.54655 -8.22326 -6.32551 0.06125 0.48899 0.54310 1.09242 1.37022 1.38559 1.46855 1.55762 2.21426 2.28727 2.37873 2.94506 3.10568 3.16459 3.46328 3.76202 3.93767 4.00339 4.01036 4.06411 4.19358 4.21818 4.30798 4.41351 4.52461 4.61973 4.63671 4.71220 4.73251 4.76542 4.84950 4.88493 5.06003 5.10316 5.16334 5.19238 5.20912 5.24999 5.33420 5.39754 5.56995 5.59580 5.62495 5.74662 5.85915 6.13327 6.18039 6.37848 6.66959 6.78528 7.16272 7.35818 8.88379 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007744 B = 0.005059 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.782214 B = 5533.215816 C = 7951.362552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 C -0.140 4.140 4 C 0.055 3.945 5 O -0.192 6.192 6 C 0.194 3.806 7 N -0.497 5.497 8 C -0.103 4.103 9 C 0.594 3.406 10 O -0.567 6.567 11 N -0.680 5.680 12 C 0.199 3.801 13 H 0.066 0.934 14 C 0.039 3.961 15 C -0.531 4.531 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.272 1.272 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.128 4.128 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.307 0.693 37 H 0.408 0.592 38 H 0.007 0.993 39 H 0.010 0.990 40 H 0.265 0.735 41 H 0.110 0.890 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.148 0.852 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.666 8.411 2.578 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.002 4.002 5 O -0.078 6.078 6 C -0.035 4.035 7 N -0.226 5.226 8 C -0.221 4.221 9 C 0.380 3.620 10 O -0.448 6.448 11 N -0.327 5.327 12 C 0.094 3.906 13 H 0.084 0.916 14 C 0.002 3.998 15 C -0.569 4.569 16 H 0.067 0.933 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.781 3.219 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.100 4.100 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.321 0.679 37 H 0.243 0.757 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.161 0.839 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.325 8.020 2.060 20.109 hybrid contribution 1.211 0.547 0.656 1.482 sum -17.114 8.568 2.715 19.331 Atomic orbital electron populations 1.21808 0.91271 1.02281 1.04105 1.20367 0.98201 0.96940 0.89724 1.21826 1.00714 0.93023 1.04150 1.23996 0.96354 0.94652 0.85206 1.84365 1.58878 1.49183 1.15422 1.29189 0.90405 0.83651 1.00253 1.70737 1.22739 1.27877 1.01211 1.21395 1.07959 1.00650 0.92117 1.17081 0.78131 0.79975 0.86765 1.90653 1.61021 1.68690 1.24434 1.45714 1.48900 1.27578 1.10554 1.19852 0.91755 0.91357 0.87590 0.91586 1.19119 0.90131 0.94750 0.95838 1.21326 0.97061 0.92891 1.45657 0.93263 1.25763 1.00688 0.96879 0.95297 1.70058 1.23069 1.14824 1.48439 0.85646 0.78401 0.79060 0.78816 1.19649 1.20402 1.19742 1.20398 0.97153 0.97763 0.94678 1.21022 0.97034 0.97121 0.99032 1.21405 0.97847 0.97937 0.97110 1.21478 1.00208 1.00035 0.92690 1.21412 0.95533 0.95798 1.01080 1.21183 0.99202 0.99653 0.94643 0.93387 0.90958 0.89329 0.87337 0.93763 0.89236 0.90929 0.67876 0.75659 0.97447 0.97199 0.92626 0.87213 0.83855 0.82881 0.83410 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.18 71.98 0.66 -1.86 16 2 C -0.03 -0.82 3.24 -11.54 -0.04 -0.86 16 3 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 4 C 0.06 1.56 5.95 25.19 0.15 1.71 16 5 O -0.19 -4.31 10.73 0.35 0.00 -4.30 16 6 C 0.19 3.93 13.19 130.52 1.72 5.65 16 7 N -0.50 -15.28 11.06 -305.15 -3.37 -18.65 16 8 C -0.10 -3.56 6.99 40.41 0.28 -3.28 16 9 C 0.59 24.29 7.77 86.66 0.67 24.97 16 10 O -0.57 -24.79 14.13 -4.06 -0.06 -24.85 16 11 N -0.68 -28.90 4.04 -449.37 -1.81 -30.71 16 12 C 0.20 9.02 2.11 44.25 0.09 9.12 16 13 H 0.07 3.23 7.44 -2.39 -0.02 3.21 16 14 C 0.04 2.06 4.49 29.85 0.13 2.19 16 15 C -0.53 -30.25 8.84 25.60 0.23 -30.02 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 17 C 0.01 0.72 5.46 84.66 0.46 1.18 16 18 N -0.92 -55.40 13.29 21.45 0.28 -55.11 16 19 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.10 -3.97 4.91 -19.87 -0.10 -4.07 16 24 C -0.12 -4.49 9.32 22.27 0.21 -4.29 16 25 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 26 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 27 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 28 C -0.13 -4.63 9.67 22.27 0.22 -4.41 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.11 3.30 5.52 -2.39 -0.01 3.29 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.31 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.41 17.32 8.33 -92.71 -0.77 16.55 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.11 4.00 7.73 -2.92 -0.02 3.98 16 42 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 45 H 0.12 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -73.95 385.00 3.32 -70.63 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.23 Total: 31.82 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 6.02 Total: -15.79 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -4.90 Total: -104.47 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.05 Total: -29.15 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.95 3.32 -70.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749164684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.943 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds