Wall clock time and date at job start Tue Mar 31 2020 15:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46705 * 2 1 4 4 C 1.50689 * 109.47483 * 120.00205 * 2 1 3 5 5 O 1.34261 * 126.52870 * 299.97701 * 4 2 1 6 6 C 1.34050 * 108.23012 * 180.02562 * 5 4 2 7 7 N 1.29933 * 109.24333 * 0.24268 * 6 5 4 8 8 C 1.36066 * 108.47641 * 359.61142 * 7 6 5 9 9 C 1.47424 * 126.45045 * 180.14954 * 8 7 6 10 10 O 1.21616 * 120.00218 * 180.26938 * 9 8 7 11 11 N 1.34777 * 119.99756 * 0.27770 * 9 8 7 12 12 C 1.46496 * 119.99954 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47454 * 324.99763 * 12 11 9 14 14 C 1.53000 * 109.47092 * 204.99945 * 12 11 9 15 15 C 1.50696 * 109.47432 * 65.00067 * 14 12 11 16 16 H 1.08008 * 119.99943 * 359.97438 * 15 14 12 17 17 C 1.37881 * 120.00389 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99642 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00196 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46918 * 59.99861 * 19 17 15 21 21 H 1.48495 * 109.47038 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47285 * 300.00172 * 19 17 15 23 23 C 1.50703 * 109.47414 * 84.99902 * 12 11 9 24 24 C 1.38237 * 119.99766 * 39.72471 * 23 12 11 25 25 C 1.38235 * 120.00062 * 179.79092 * 24 23 12 26 26 C 1.38235 * 119.99641 * 0.44063 * 25 24 23 27 27 C 1.38241 * 120.00151 * 359.81589 * 26 25 24 28 28 C 1.38226 * 119.99988 * 359.97163 * 27 26 25 29 29 H 1.09006 * 109.46976 * 299.99380 * 1 2 3 30 30 H 1.08997 * 109.47526 * 60.00111 * 1 2 3 31 31 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46976 * 240.00620 * 2 1 3 33 33 H 1.08997 * 109.47495 * 299.99914 * 3 2 1 34 34 H 1.08998 * 109.47507 * 60.00573 * 3 2 1 35 35 H 1.09005 * 109.46950 * 180.02562 * 3 2 1 36 36 H 1.08002 * 125.37508 * 179.97438 * 6 5 4 37 37 H 0.96999 * 119.99930 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.47408 * 185.00026 * 14 12 11 39 39 H 1.08996 * 109.46980 * 304.99634 * 14 12 11 40 40 H 0.96996 * 119.99834 * 180.02562 * 18 17 15 41 41 H 1.08002 * 119.99753 * 0.02562 * 24 23 12 42 42 H 1.07994 * 120.00088 * 180.27299 * 25 24 23 43 43 H 1.08003 * 120.00022 * 179.83381 * 26 25 24 44 44 H 1.08003 * 119.99624 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.00130 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 1.7906 -0.3677 2.5057 6 6 2.4137 -1.2480 3.3018 7 7 3.0373 -2.1212 2.5692 8 6 2.8181 -1.8212 1.2603 9 6 3.3384 -2.5576 0.0939 10 8 3.0716 -2.1812 -1.0314 11 7 4.1097 -3.6479 0.2746 12 6 4.6263 -4.3800 -0.8844 13 1 3.8883 -4.3584 -1.6863 14 6 4.9062 -5.8310 -0.4878 15 6 3.6107 -6.5130 -0.1307 16 1 2.6807 -5.9660 -0.1810 17 6 3.6127 -7.8348 0.2615 18 7 4.7451 -8.5007 0.3233 19 14 2.0069 -8.6800 0.7049 20 1 1.0942 -8.6545 -0.4664 21 1 2.2785 -10.0882 1.0897 22 1 1.3712 -7.9691 1.8432 23 6 5.9025 -3.7338 -1.3588 24 6 6.8220 -3.2635 -0.4400 25 6 7.9946 -2.6747 -0.8750 26 6 8.2434 -2.5480 -2.2288 27 6 7.3215 -3.0136 -3.1477 28 6 6.1510 -3.6063 -2.7126 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 2.4028 -1.2312 4.3817 37 1 4.3227 -3.9480 1.1721 38 1 5.3729 -6.3525 -1.3235 39 1 5.5759 -5.8499 0.3719 40 1 4.7465 -9.4307 0.5988 41 1 6.6260 -3.3595 0.6178 42 1 8.7149 -2.3112 -0.1572 43 1 9.1583 -2.0855 -2.5688 44 1 7.5162 -2.9150 -4.2054 45 1 5.4305 -3.9697 -3.4304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749164686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:07 Heat of formation + Delta-G solvation = -27.653843 kcal Electronic energy + Delta-G solvation = -27990.948083 eV Core-core repulsion = 24166.488629 eV Total energy + Delta-G solvation = -3824.459454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.46390 -41.03152 -39.70453 -37.06361 -36.48762 -35.79641 -34.72893 -32.58382 -31.71546 -30.74106 -30.44848 -28.13487 -27.00723 -25.12665 -24.32521 -23.81676 -23.35969 -22.10626 -21.28740 -21.19498 -19.19510 -18.61793 -17.81239 -17.69227 -17.36418 -16.98491 -16.51259 -16.25801 -16.02113 -15.82694 -15.50009 -15.34918 -14.79566 -14.62942 -14.45455 -14.20788 -14.14830 -14.10051 -13.70003 -13.47975 -13.11541 -12.95911 -12.72454 -12.67773 -12.51369 -12.41894 -12.26337 -12.18210 -12.11480 -11.88479 -11.73396 -11.61652 -11.38001 -10.99607 -10.60122 -10.17416 -9.88148 -9.77034 -9.54600 -8.22325 -6.32554 0.06102 0.48879 0.54317 1.09217 1.37036 1.38561 1.46870 1.55733 2.21467 2.28604 2.37882 2.94497 3.10562 3.16431 3.46327 3.76181 3.93757 4.00351 4.01004 4.06405 4.19279 4.21806 4.30785 4.41348 4.52455 4.61863 4.63655 4.71224 4.73300 4.76540 4.84941 4.88442 5.06029 5.10303 5.16279 5.19214 5.20895 5.24981 5.33390 5.39729 5.56914 5.59572 5.62474 5.74675 5.85915 6.13334 6.18019 6.37817 6.66922 6.78526 7.16228 7.35824 8.88397 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007749 B = 0.005058 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.310669 B = 5534.397043 C = 7951.753120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.034 4.034 3 C -0.137 4.137 4 C 0.055 3.945 5 O -0.192 6.192 6 C 0.194 3.806 7 N -0.497 5.497 8 C -0.103 4.103 9 C 0.594 3.406 10 O -0.567 6.567 11 N -0.680 5.680 12 C 0.199 3.801 13 H 0.066 0.934 14 C 0.039 3.961 15 C -0.531 4.531 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.271 1.271 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.128 4.128 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.307 0.693 37 H 0.408 0.592 38 H 0.010 0.990 39 H 0.007 0.993 40 H 0.265 0.735 41 H 0.110 0.890 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.148 0.852 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 20.418 2.544 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.002 4.002 5 O -0.078 6.078 6 C -0.035 4.035 7 N -0.226 5.226 8 C -0.221 4.221 9 C 0.381 3.619 10 O -0.448 6.448 11 N -0.327 5.327 12 C 0.094 3.906 13 H 0.084 0.916 14 C 0.002 3.998 15 C -0.569 4.569 16 H 0.067 0.933 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.781 3.219 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.196 1.196 23 C -0.100 4.100 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.147 4.147 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.321 0.679 37 H 0.243 0.757 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.161 0.839 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.502 19.970 2.025 20.128 hybrid contribution -0.917 -0.963 0.660 1.485 sum -2.419 19.007 2.685 19.347 Atomic orbital electron populations 1.21828 0.91619 1.02123 1.04145 1.20366 0.97955 0.97186 0.89729 1.21809 1.00848 0.92699 1.04108 1.23995 0.96289 0.94719 0.85202 1.84365 1.59197 1.48860 1.15424 1.29190 0.90452 0.83601 1.00254 1.70738 1.23172 1.27445 1.01205 1.21395 1.08160 1.00447 0.92118 1.17081 0.77914 0.80188 0.86765 1.90655 1.61049 1.68661 1.24436 1.45715 1.49665 1.26815 1.10554 1.19851 0.91588 0.91544 0.87569 0.91582 1.19118 0.96229 0.88662 0.95831 1.21326 0.93589 0.96462 1.45549 0.93261 1.25763 0.99479 0.98076 0.95315 1.70059 1.27419 1.10499 1.48420 0.85646 0.79879 0.77574 0.78818 1.19741 1.20403 1.19647 1.20402 0.96437 0.98473 0.94680 1.21022 0.94793 0.99362 0.99045 1.21404 0.96594 0.99218 0.97079 1.21480 1.00182 1.00045 0.92708 1.21411 0.93321 0.98001 1.01088 1.21179 0.98801 1.00087 0.94614 0.90924 0.89247 0.93760 0.87336 0.89324 0.90958 0.93390 0.67875 0.75658 0.97197 0.97457 0.92626 0.87214 0.83856 0.82879 0.83409 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C -0.03 -0.82 3.24 -11.54 -0.04 -0.86 16 3 C -0.14 -2.52 9.18 71.98 0.66 -1.86 16 4 C 0.06 1.56 5.95 25.18 0.15 1.71 16 5 O -0.19 -4.31 10.73 0.35 0.00 -4.30 16 6 C 0.19 3.92 13.19 130.52 1.72 5.65 16 7 N -0.50 -15.27 11.06 -305.15 -3.37 -18.64 16 8 C -0.10 -3.56 6.99 40.41 0.28 -3.28 16 9 C 0.59 24.29 7.77 86.66 0.67 24.96 16 10 O -0.57 -24.79 14.13 -4.08 -0.06 -24.85 16 11 N -0.68 -28.89 4.02 -449.37 -1.81 -30.70 16 12 C 0.20 9.03 2.12 44.25 0.09 9.12 16 13 H 0.07 3.23 7.44 -2.39 -0.02 3.21 16 14 C 0.04 2.06 4.50 29.85 0.13 2.19 16 15 C -0.53 -30.24 8.84 25.60 0.23 -30.02 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 17 C 0.01 0.72 5.46 84.66 0.46 1.18 16 18 N -0.92 -55.41 13.29 21.45 0.28 -55.12 16 19 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.10 -3.97 4.92 -19.86 -0.10 -4.07 16 24 C -0.12 -4.50 9.33 22.27 0.21 -4.29 16 25 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 26 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 27 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 28 C -0.13 -4.63 9.67 22.27 0.22 -4.41 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 3.30 5.52 -2.38 -0.01 3.29 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.31 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.41 17.32 8.33 -92.71 -0.77 16.55 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.11 4.00 7.71 -2.91 -0.02 3.98 16 42 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 45 H 0.12 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -73.95 384.98 3.33 -70.62 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.23 Total: 31.81 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 6.02 Total: -15.79 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.89 Total: -104.46 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.05 Total: -29.15 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.95 3.33 -70.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749164686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.967 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds