Wall clock time and date at job start Tue Mar 31 2020 16:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47088 * 2 1 4 4 C 1.52996 * 109.47027 * 120.00297 * 2 1 3 5 5 N 1.46507 * 109.47049 * 174.57614 * 4 2 1 6 6 C 1.46501 * 119.99949 * 275.67945 * 5 4 2 7 7 C 1.50695 * 109.47003 * 265.03730 * 6 5 4 8 8 H 1.07995 * 120.00073 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99675 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99690 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00205 * 359.97438 * 9 7 6 12 12 H 1.48491 * 109.47195 * 90.00028 * 11 9 7 13 13 H 1.48498 * 109.47002 * 210.00144 * 11 9 7 14 14 H 1.48500 * 109.46923 * 329.99852 * 11 9 7 15 15 C 1.34773 * 119.99827 * 95.40249 * 5 4 2 16 16 O 1.21581 * 120.00231 * 354.99048 * 15 5 4 17 17 C 1.47530 * 119.99992 * 174.99163 * 15 5 4 18 18 C 1.36618 * 126.83135 * 174.37169 * 17 15 5 19 19 C 1.42192 * 103.79361 * 179.90829 * 18 17 15 20 20 C 1.48452 * 126.84716 * 180.12929 * 19 18 17 21 21 C 1.39318 * 120.11450 * 359.97438 * 20 19 18 22 22 C 1.38025 * 119.87679 * 179.69622 * 21 20 19 23 23 C 1.38316 * 120.11733 * 0.60703 * 22 21 20 24 24 C 1.38318 * 120.24425 * 359.67243 * 23 22 21 25 25 C 1.38027 * 120.11582 * 0.02562 * 24 23 22 26 26 N 1.30938 * 106.31454 * 0.36172 * 19 18 17 27 27 O 1.20867 * 111.80252 * 359.76698 * 26 19 18 28 28 H 1.08999 * 109.46945 * 299.99821 * 1 2 3 29 29 H 1.08991 * 109.47395 * 60.00139 * 1 2 3 30 30 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46659 * 239.99870 * 2 1 3 32 32 H 1.09001 * 109.47255 * 65.49035 * 3 2 1 33 33 H 1.09004 * 109.46883 * 185.49030 * 3 2 1 34 34 H 1.09004 * 109.47000 * 305.48614 * 3 2 1 35 35 H 1.08994 * 109.47727 * 54.57600 * 4 2 1 36 36 H 1.08997 * 109.47318 * 294.57093 * 4 2 1 37 37 H 1.08998 * 109.46955 * 25.04123 * 6 5 4 38 38 H 1.08997 * 109.46898 * 145.03077 * 6 5 4 39 39 H 0.96998 * 119.99378 * 179.97438 * 10 9 7 40 40 H 1.07999 * 128.10590 * 0.02562 * 18 17 15 41 41 H 1.07999 * 120.06318 * 0.02562 * 21 20 19 42 42 H 1.07996 * 119.93853 * 180.31807 * 22 21 20 43 43 H 1.08005 * 119.87787 * 179.69502 * 23 22 21 44 44 H 1.08003 * 119.94816 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.05943 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4993 -0.8354 1.1857 6 6 4.1162 -1.9415 0.4492 7 6 4.4286 -3.0666 1.4017 8 1 4.1918 -2.9676 2.4507 9 6 5.0178 -4.2221 0.9340 10 7 5.2910 -5.2040 1.7653 11 14 5.4281 -4.3931 -0.8804 12 1 6.8025 -3.8879 -1.1268 13 1 5.3484 -5.8230 -1.2732 14 1 4.4593 -3.6044 -1.6833 15 6 4.2741 0.0803 1.8001 16 8 3.7661 1.0499 2.3292 17 6 5.7388 -0.0939 1.8306 18 6 6.6590 0.7919 2.3155 19 6 7.9034 0.1365 2.1064 20 6 9.2510 0.6526 2.4550 21 6 9.3873 1.9039 3.0520 22 6 10.6421 2.3763 3.3798 23 6 11.7638 1.6151 3.1050 24 6 11.6346 0.3746 2.5071 25 6 10.3841 -0.1101 2.1809 26 7 7.6243 -1.0109 1.5406 27 8 6.4350 -1.1551 1.3807 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.7592 1.9271 0.9351 33 1 3.1256 1.4440 -0.0983 34 1 1.5987 1.9839 -0.8368 35 1 1.5996 -1.7170 1.2991 36 1 1.7583 -0.1545 2.1365 37 1 3.4279 -2.2955 -0.3182 38 1 5.0373 -1.5963 -0.0202 39 1 5.7052 -6.0170 1.4362 40 1 6.4824 1.7619 2.7562 41 1 8.5124 2.5010 3.2629 42 1 10.7486 3.3440 3.8473 43 1 12.7442 1.9906 3.3587 44 1 12.5137 -0.2160 2.2951 45 1 10.2843 -1.0791 1.7144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751379432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:34 Heat of formation + Delta-G solvation = 49.703896 kcal Electronic energy + Delta-G solvation = -28050.461507 eV Core-core repulsion = 24229.356537 eV Total energy + Delta-G solvation = -3821.104970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.45751 -39.46733 -39.11058 -36.24391 -34.50523 -33.97190 -32.34568 -31.65089 -30.94094 -30.17456 -28.20634 -26.92738 -26.31253 -23.98527 -23.54438 -22.74192 -21.86604 -21.61420 -19.96363 -19.12496 -17.46190 -17.32888 -16.80921 -16.44284 -16.14513 -15.82406 -15.20297 -14.86299 -14.64871 -14.35641 -14.11595 -13.76760 -13.55292 -13.31438 -13.17924 -13.07722 -13.00547 -12.67931 -12.34709 -12.03231 -11.86493 -11.61395 -11.45383 -11.38341 -11.15280 -10.99914 -10.87555 -10.71034 -10.67636 -10.53699 -10.37607 -10.22703 -9.73573 -9.58489 -9.34212 -9.03761 -8.67238 -8.45814 -7.93326 -6.17005 -4.18374 0.89989 1.31807 1.35433 2.62126 3.12981 3.24722 3.28707 3.33440 3.52759 3.72795 3.84909 4.14873 4.32445 4.59011 4.86419 4.96271 5.00908 5.09250 5.14752 5.16237 5.22856 5.30549 5.33679 5.41443 5.49224 5.64300 5.76946 5.81123 5.86018 5.88529 5.96764 6.06322 6.09940 6.14871 6.20252 6.24995 6.35149 6.37483 6.42092 6.49497 6.52269 6.61159 6.67237 6.85508 7.12852 7.43322 7.84978 8.31025 8.46517 8.64937 8.86473 9.42193 10.95744 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004259 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.468321 B = 6572.560268 C = 8595.048997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.571 5.571 6 C 0.203 3.797 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.086 3.914 10 N -0.888 5.888 11 Si 0.864 3.136 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.601 3.399 16 O -0.539 6.539 17 C -0.058 4.058 18 C -0.164 4.164 19 C 0.025 3.975 20 C -0.007 4.007 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.095 4.095 26 N -0.342 5.342 27 O 0.184 5.816 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.033 0.967 39 H 0.266 0.734 40 H 0.177 0.823 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 13.536 -1.368 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.194 4.194 4 C 0.000 4.000 5 N -0.300 5.300 6 C 0.082 3.918 7 C -0.574 4.574 8 H 0.096 0.904 9 C -0.118 4.118 10 N -0.525 5.525 11 Si 0.690 3.310 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.387 3.613 16 O -0.419 6.419 17 C -0.124 4.124 18 C -0.187 4.187 19 C -0.129 4.129 20 C -0.008 4.008 21 C -0.118 4.118 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.114 4.114 26 N -0.035 5.035 27 O 0.102 5.898 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.195 0.805 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.396 12.784 -1.521 13.604 hybrid contribution 0.138 0.185 -0.587 0.630 sum 4.534 12.968 -2.108 13.899 Atomic orbital electron populations 1.21748 0.94841 1.01777 1.01598 1.21538 0.95676 0.97032 0.99146 1.21770 1.00907 0.95439 1.01315 1.21567 0.79093 1.01324 0.97989 1.47862 1.06245 1.25769 1.50085 1.20041 0.93601 0.85197 0.92994 1.21191 1.41611 0.98446 0.96163 0.90405 1.24745 0.94386 0.95380 0.97274 1.69878 1.41816 1.06075 1.34771 0.87030 0.79998 0.77854 0.86081 1.19475 1.20928 1.18911 1.16548 0.82406 0.82986 0.79405 1.90765 1.72539 1.30399 1.48182 1.24114 0.95434 0.89027 1.03860 1.22663 0.89572 1.02122 1.04357 1.21875 0.94614 0.92373 1.04023 1.17723 0.88704 0.94548 0.99789 1.21143 0.98082 0.94606 0.97973 1.21043 0.92162 1.00099 1.00557 1.21228 0.98689 0.94775 0.98922 1.21100 0.97133 0.96253 0.99294 1.21301 0.91605 0.99902 0.98561 1.74055 0.96356 1.17662 1.15393 1.85501 1.11109 1.35562 1.57583 0.92620 0.92810 0.92491 0.91022 0.92103 0.93140 0.93687 0.89728 0.90043 0.93994 0.94926 0.92396 0.80531 0.85416 0.85620 0.85957 0.85676 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 37.16 0.34 -1.27 16 2 C -0.11 -1.61 3.12 -90.62 -0.28 -1.90 16 3 C -0.14 -1.95 7.93 37.16 0.29 -1.66 16 4 C 0.12 2.05 4.92 -4.04 -0.02 2.03 16 5 N -0.57 -11.28 2.29 -176.30 -0.40 -11.68 16 6 C 0.20 4.45 3.84 -5.20 -0.02 4.43 16 7 C -0.54 -14.01 8.45 -34.44 -0.29 -14.30 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.09 2.35 5.47 -17.82 -0.10 2.25 16 10 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 11 Si 0.86 20.28 27.47 -169.99 -4.67 15.61 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 15 C 0.60 12.08 6.53 -12.47 -0.08 11.99 16 16 O -0.54 -10.91 14.97 5.29 0.08 -10.83 16 17 C -0.06 -1.17 6.77 -36.38 -0.25 -1.41 16 18 C -0.16 -2.85 10.31 -38.65 -0.40 -3.25 16 19 C 0.03 0.45 7.05 -82.52 -0.58 -0.13 16 20 C -0.01 -0.10 5.88 -104.89 -0.62 -0.72 16 21 C -0.10 -1.21 9.60 -39.26 -0.38 -1.59 16 22 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 23 C -0.12 -1.18 10.04 -39.52 -0.40 -1.58 16 24 C -0.12 -1.37 10.03 -39.63 -0.40 -1.76 16 25 C -0.09 -1.35 9.70 -39.26 -0.38 -1.73 16 26 N -0.34 -7.23 11.78 33.39 0.39 -6.84 16 27 O 0.18 4.09 7.11 15.52 0.11 4.20 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.89 7.87 -51.93 -0.41 0.49 16 33 H 0.05 0.81 6.86 -51.93 -0.36 0.45 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 36 H 0.08 1.35 7.33 -51.93 -0.38 0.97 16 37 H 0.04 0.89 7.09 -51.93 -0.37 0.52 16 38 H 0.03 0.73 5.35 -51.93 -0.28 0.45 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 40 H 0.18 2.51 7.57 -52.49 -0.40 2.12 16 41 H 0.13 1.35 7.22 -52.49 -0.38 0.97 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 45 H 0.13 1.96 7.89 -52.48 -0.41 1.54 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -30.33 373.75 -8.41 -38.74 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.38 Total: 2.67 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.95 Total: -12.24 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.76 Total: -43.78 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.19 Total: -6.64 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.33 -8.41 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751379432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.442 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds