Wall clock time and date at job start Tue Mar 31 2020 16:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47088 * 2 1 4 4 C 1.52996 * 109.47027 * 120.00297 * 2 1 3 5 5 N 1.46507 * 109.47049 * 174.57614 * 4 2 1 6 6 C 1.46501 * 119.99949 * 275.67945 * 5 4 2 7 7 C 1.50695 * 109.47003 * 265.03730 * 6 5 4 8 8 H 1.07995 * 120.00073 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99675 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99690 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00205 * 359.97438 * 9 7 6 12 12 H 1.48491 * 109.47195 * 90.00028 * 11 9 7 13 13 H 1.48498 * 109.47002 * 210.00144 * 11 9 7 14 14 H 1.48500 * 109.46923 * 329.99852 * 11 9 7 15 15 C 1.34773 * 119.99827 * 95.40249 * 5 4 2 16 16 O 1.21581 * 120.00231 * 354.99048 * 15 5 4 17 17 C 1.47530 * 119.99992 * 174.99163 * 15 5 4 18 18 C 1.36618 * 126.83135 * 174.37169 * 17 15 5 19 19 C 1.42192 * 103.79361 * 179.90829 * 18 17 15 20 20 C 1.48452 * 126.84716 * 180.12929 * 19 18 17 21 21 C 1.39318 * 120.11450 * 359.97438 * 20 19 18 22 22 C 1.38025 * 119.87679 * 179.69622 * 21 20 19 23 23 C 1.38316 * 120.11733 * 0.60703 * 22 21 20 24 24 C 1.38318 * 120.24425 * 359.67243 * 23 22 21 25 25 C 1.38027 * 120.11582 * 0.02562 * 24 23 22 26 26 N 1.30938 * 106.31454 * 0.36172 * 19 18 17 27 27 O 1.20867 * 111.80252 * 359.76698 * 26 19 18 28 28 H 1.08999 * 109.46945 * 299.99821 * 1 2 3 29 29 H 1.08991 * 109.47395 * 60.00139 * 1 2 3 30 30 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46659 * 239.99870 * 2 1 3 32 32 H 1.09001 * 109.47255 * 65.49035 * 3 2 1 33 33 H 1.09004 * 109.46883 * 185.49030 * 3 2 1 34 34 H 1.09004 * 109.47000 * 305.48614 * 3 2 1 35 35 H 1.08994 * 109.47727 * 54.57600 * 4 2 1 36 36 H 1.08997 * 109.47318 * 294.57093 * 4 2 1 37 37 H 1.08998 * 109.46955 * 25.04123 * 6 5 4 38 38 H 1.08997 * 109.46898 * 145.03077 * 6 5 4 39 39 H 0.96998 * 119.99378 * 179.97438 * 10 9 7 40 40 H 1.07999 * 128.10590 * 0.02562 * 18 17 15 41 41 H 1.07999 * 120.06318 * 0.02562 * 21 20 19 42 42 H 1.07996 * 119.93853 * 180.31807 * 22 21 20 43 43 H 1.08005 * 119.87787 * 179.69502 * 23 22 21 44 44 H 1.08003 * 119.94816 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.05943 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4993 -0.8354 1.1857 6 6 4.1162 -1.9415 0.4492 7 6 4.4286 -3.0666 1.4017 8 1 4.1918 -2.9676 2.4507 9 6 5.0178 -4.2221 0.9340 10 7 5.2910 -5.2040 1.7653 11 14 5.4281 -4.3931 -0.8804 12 1 6.8025 -3.8879 -1.1268 13 1 5.3484 -5.8230 -1.2732 14 1 4.4593 -3.6044 -1.6833 15 6 4.2741 0.0803 1.8001 16 8 3.7661 1.0499 2.3292 17 6 5.7388 -0.0939 1.8306 18 6 6.6590 0.7919 2.3155 19 6 7.9034 0.1365 2.1064 20 6 9.2510 0.6526 2.4550 21 6 9.3873 1.9039 3.0520 22 6 10.6421 2.3763 3.3798 23 6 11.7638 1.6151 3.1050 24 6 11.6346 0.3746 2.5071 25 6 10.3841 -0.1101 2.1809 26 7 7.6243 -1.0109 1.5406 27 8 6.4350 -1.1551 1.3807 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.7592 1.9271 0.9351 33 1 3.1256 1.4440 -0.0983 34 1 1.5987 1.9839 -0.8368 35 1 1.5996 -1.7170 1.2991 36 1 1.7583 -0.1545 2.1365 37 1 3.4279 -2.2955 -0.3182 38 1 5.0373 -1.5963 -0.0202 39 1 5.7052 -6.0170 1.4362 40 1 6.4824 1.7619 2.7562 41 1 8.5124 2.5010 3.2629 42 1 10.7486 3.3440 3.8473 43 1 12.7442 1.9906 3.3587 44 1 12.5137 -0.2160 2.2951 45 1 10.2843 -1.0791 1.7144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751379432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:33 Heat of formation + Delta-G solvation = 33.643845 kcal Electronic energy + Delta-G solvation = -28051.157923 eV Core-core repulsion = 24229.356537 eV Total energy + Delta-G solvation = -3821.801386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.94455 -41.01312 -40.05939 -37.67735 -35.93719 -35.37617 -34.30490 -33.03990 -31.89295 -31.29369 -30.05559 -28.03496 -27.65108 -25.26403 -24.97045 -24.37219 -23.06017 -22.85669 -21.16339 -20.46398 -19.20929 -18.89587 -18.55301 -17.65834 -17.47853 -17.22661 -16.50510 -16.32852 -15.91533 -15.64055 -15.51264 -15.16586 -14.71856 -14.52679 -14.43862 -14.41331 -14.26158 -14.02321 -13.85157 -13.55378 -13.13182 -12.86610 -12.82336 -12.66987 -12.53814 -12.34655 -12.27261 -11.94813 -11.93030 -11.86480 -11.80437 -11.69234 -11.53109 -11.27331 -10.84755 -10.76846 -9.94603 -9.56698 -9.55144 -8.29214 -6.33830 -0.28927 -0.05581 0.41199 1.34332 1.36721 1.39712 1.43930 1.64785 1.97329 2.21152 2.33718 2.86974 2.90133 3.07613 3.22353 3.70204 3.92913 3.96609 4.04331 4.04894 4.09038 4.10644 4.19021 4.29877 4.49192 4.57366 4.62322 4.64271 4.69715 4.75114 4.78019 4.87774 4.95375 4.96579 5.04706 5.07496 5.10238 5.24395 5.40791 5.42514 5.47356 5.48264 5.50068 5.52383 5.58683 5.98034 6.08725 6.36257 6.66948 6.87492 7.12910 7.30510 8.87425 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004259 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.468321 B = 6572.560268 C = 8595.048997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.575 5.575 6 C 0.214 3.786 7 C -0.524 4.524 8 H 0.032 0.968 9 C 0.032 3.968 10 N -0.940 5.940 11 Si 0.923 3.077 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.232 1.232 15 C 0.600 3.400 16 O -0.543 6.543 17 C -0.085 4.085 18 C -0.148 4.148 19 C 0.040 3.960 20 C -0.045 4.045 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.116 4.116 26 N -0.378 5.378 27 O 0.143 5.857 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.266 0.734 40 H 0.209 0.791 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.147 0.853 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 16.494 -2.164 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 C -0.189 4.189 4 C -0.005 4.005 5 N -0.303 5.303 6 C 0.092 3.908 7 C -0.563 4.563 8 H 0.050 0.950 9 C -0.167 4.167 10 N -0.580 5.580 11 Si 0.746 3.254 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.155 1.155 15 C 0.386 3.614 16 O -0.423 6.423 17 C -0.151 4.151 18 C -0.170 4.170 19 C -0.115 4.115 20 C -0.046 4.046 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.136 4.136 26 N -0.077 5.077 27 O 0.069 5.931 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.226 0.774 41 H 0.162 0.838 42 H 0.180 0.820 43 H 0.178 0.822 44 H 0.165 0.835 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.072 15.757 -2.332 16.716 hybrid contribution 0.056 -0.595 -0.163 0.620 sum 5.128 15.161 -2.495 16.199 Atomic orbital electron populations 1.21712 0.92392 1.02521 1.02747 1.21502 0.97602 0.96435 0.97284 1.21711 0.99541 0.95711 1.01897 1.21804 0.77346 1.01717 0.99585 1.47886 1.07509 1.25019 1.49909 1.19780 0.94190 0.84471 0.92355 1.21274 1.40485 0.99713 0.94783 0.94965 1.25537 0.94341 0.95015 1.01802 1.70028 1.43840 1.06984 1.37141 0.86083 0.80028 0.78259 0.81035 1.20127 1.20632 1.15485 1.16615 0.82555 0.83026 0.79239 1.90742 1.72724 1.30489 1.48389 1.24396 0.95857 0.89637 1.05191 1.23074 0.88537 1.02602 1.02835 1.22463 0.96316 0.91129 1.01596 1.17900 0.87330 0.96479 1.02847 1.21418 0.99975 0.93366 0.97046 1.21505 0.91101 1.01355 0.99335 1.21719 1.00475 0.93551 0.96503 1.21387 0.96461 0.97303 0.98913 1.21317 0.93040 0.99458 0.99776 1.74026 0.96130 1.19688 1.17876 1.85430 1.11660 1.36763 1.59248 0.92106 0.91031 0.92002 0.91265 0.92809 0.95359 0.91384 0.89887 0.90209 0.92272 0.94812 0.92479 0.77386 0.83811 0.81972 0.82225 0.83546 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.19 71.98 0.66 -2.11 16 2 C -0.11 -2.91 3.12 -10.79 -0.03 -2.95 16 3 C -0.13 -3.55 7.93 71.98 0.57 -2.98 16 4 C 0.12 3.89 4.92 86.38 0.42 4.31 16 5 N -0.58 -23.11 2.29 -829.96 -1.90 -25.01 16 6 C 0.21 9.53 3.84 85.63 0.33 9.86 16 7 C -0.52 -28.59 8.45 25.60 0.22 -28.37 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 9 C 0.03 1.82 5.47 84.65 0.46 2.28 16 10 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 11 Si 0.92 42.44 27.47 68.60 1.88 44.32 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.23 -9.37 6.54 99.48 0.65 -8.72 16 15 C 0.60 24.64 6.53 86.69 0.57 25.20 16 16 O -0.54 -22.07 14.97 -3.97 -0.06 -22.13 16 17 C -0.08 -3.53 6.77 24.34 0.16 -3.37 16 18 C -0.15 -5.18 10.31 22.87 0.24 -4.94 16 19 C 0.04 1.48 7.05 42.98 0.30 1.78 16 20 C -0.04 -1.35 5.88 -20.03 -0.12 -1.47 16 21 C -0.10 -2.20 9.60 22.48 0.22 -1.99 16 22 C -0.12 -1.90 10.03 22.24 0.22 -1.67 16 23 C -0.10 -1.67 10.04 22.31 0.22 -1.45 16 24 C -0.12 -2.56 10.03 22.24 0.22 -2.34 16 25 C -0.12 -3.37 9.70 22.48 0.22 -3.16 16 26 N -0.38 -16.88 11.78 -48.92 -0.58 -17.45 16 27 O 0.14 6.71 7.11 65.74 0.47 7.18 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.05 1.52 7.87 -2.39 -0.02 1.50 16 33 H 0.03 0.87 6.86 -2.39 -0.02 0.86 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 2.74 8.11 -2.39 -0.02 2.73 16 36 H 0.08 2.66 7.33 -2.39 -0.02 2.64 16 37 H 0.06 2.45 7.09 -2.39 -0.02 2.43 16 38 H 0.03 1.54 5.35 -2.39 -0.01 1.53 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.21 5.62 7.57 -2.91 -0.02 5.60 16 41 H 0.14 2.63 7.22 -2.91 -0.02 2.61 16 42 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 45 H 0.11 3.48 7.89 -2.91 -0.02 3.46 16 Total: -1.00 -70.69 373.75 5.94 -64.75 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.94 Total: 19.15 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.89 Total: -13.36 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -2.17 Total: -99.91 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.41 Total: -14.95 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -70.69 5.94 -64.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751379432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.390 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds