Wall clock time and date at job start Tue Mar 31 2020 15:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47421 * 2 1 4 4 C 1.53002 * 109.47323 * 119.99683 * 2 1 3 5 5 C 1.53008 * 109.46895 * 64.99622 * 4 2 1 6 6 N 1.46901 * 109.46873 * 180.02562 * 5 4 2 7 7 C 1.46907 * 110.99988 * 293.95485 * 6 5 4 8 8 C 1.50701 * 109.47177 * 164.53481 * 7 6 5 9 9 H 1.08001 * 119.99817 * 4.73907 * 8 7 6 10 10 C 1.37876 * 120.00137 * 184.74682 * 8 7 6 11 11 N 1.31516 * 119.99799 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99938 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47071 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46903 * 119.99750 * 12 10 8 15 15 H 1.48496 * 109.46853 * 239.99288 * 12 10 8 16 16 C 1.46900 * 110.99910 * 170.00654 * 6 5 4 17 17 N 1.46507 * 109.46532 * 280.65109 * 16 6 5 18 18 C 1.33475 * 119.36870 * 275.25358 * 17 16 6 19 19 O 1.21571 * 126.16137 * 0.02923 * 18 17 16 20 20 S 1.77283 * 107.67125 * 179.90540 * 18 17 16 21 21 C 1.82467 * 94.26207 * 0.29721 * 20 18 17 22 22 C 1.53001 * 110.70834 * 241.45439 * 21 20 18 23 23 C 1.53004 * 110.70752 * 118.21385 * 21 20 18 24 24 C 1.32242 * 119.37033 * 95.53349 * 17 16 6 25 25 O 1.21239 * 123.09948 * 359.97438 * 24 17 16 26 26 H 1.09001 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46790 * 300.00508 * 1 2 3 28 28 H 1.08996 * 109.47189 * 59.99997 * 1 2 3 29 29 H 1.08997 * 109.47444 * 239.99189 * 2 1 3 30 30 H 1.09002 * 109.47601 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46821 * 299.99912 * 3 2 1 32 32 H 1.09001 * 109.47553 * 59.99959 * 3 2 1 33 33 H 1.09004 * 109.46985 * 305.00485 * 4 2 1 34 34 H 1.09000 * 109.47578 * 184.99934 * 4 2 1 35 35 H 1.08997 * 109.46761 * 60.00951 * 5 4 2 36 36 H 1.08999 * 109.47299 * 299.99951 * 5 4 2 37 37 H 1.09000 * 109.46875 * 284.53564 * 7 6 5 38 38 H 1.08994 * 109.47273 * 44.53280 * 7 6 5 39 39 H 0.97000 * 120.00089 * 180.02562 * 11 10 8 40 40 H 1.08995 * 109.47448 * 40.64556 * 16 6 5 41 41 H 1.08994 * 109.47160 * 160.65404 * 16 6 5 42 42 H 1.09000 * 109.46844 * 173.58457 * 22 21 20 43 43 H 1.08994 * 109.47430 * 293.58500 * 22 21 20 44 44 H 1.09000 * 109.46897 * 53.58995 * 22 21 20 45 45 H 1.09000 * 109.46915 * 306.41216 * 23 21 20 46 46 H 1.08997 * 109.47154 * 66.41600 * 23 21 20 47 47 H 1.08998 * 109.47141 * 186.41325 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1881 6 7 2.1244 -2.8877 2.3879 7 6 3.5927 -2.9291 2.4099 8 6 4.0643 -3.2905 3.7948 9 1 3.3464 -3.5460 4.5602 10 6 5.4122 -3.2947 4.0849 11 7 6.2864 -2.9838 3.1528 12 14 5.9967 -3.7419 5.8018 13 1 4.8241 -4.0484 6.6597 14 1 6.8819 -4.9320 5.7290 15 1 6.7489 -2.6003 6.3816 16 6 1.5582 -4.2399 2.4830 17 7 0.1925 -4.1616 3.0075 18 6 -0.0002 -4.1159 4.3274 19 8 0.8664 -4.1321 5.1799 20 16 -1.7474 -4.0236 4.6133 21 6 -2.1771 -4.0611 2.8404 22 6 -2.9088 -2.7804 2.4338 23 6 -3.0211 -5.2950 2.5143 24 6 -0.8260 -4.1431 2.1642 25 8 -0.6898 -4.1878 0.9603 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 2.0699 -2.6550 0.3005 36 1 0.5489 -2.2723 1.1422 37 1 3.9458 -3.6764 1.6993 38 1 3.9879 -1.9512 2.1351 39 1 7.2347 -2.9871 3.3567 40 1 1.5418 -4.6974 1.4939 41 1 2.1705 -4.8438 3.1527 42 1 -3.0545 -2.7726 1.3536 43 1 -3.8778 -2.7419 2.9313 44 1 -2.3153 -1.9143 2.7266 45 1 -2.5062 -6.1900 2.8635 46 1 -3.9883 -5.2151 3.0106 47 1 -3.1701 -5.3587 1.4364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753999837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:02 Heat of formation + Delta-G solvation = -62.790550 kcal Electronic energy + Delta-G solvation = -27808.349276 eV Core-core repulsion = 24117.810132 eV Total energy + Delta-G solvation = -3690.539144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64153 -38.76336 -37.52640 -35.86775 -35.39044 -34.38046 -32.45766 -29.17362 -27.88353 -27.75797 -26.99122 -25.59317 -24.89255 -22.90289 -22.66222 -20.39098 -19.79308 -19.52892 -18.81767 -17.00968 -16.95443 -16.24238 -15.68650 -15.41910 -15.09248 -14.86101 -14.54410 -14.43403 -14.31656 -13.95035 -13.65930 -13.40498 -13.15703 -13.03726 -12.81372 -12.65899 -12.56662 -12.19974 -12.03921 -11.83425 -11.70719 -11.54950 -11.37277 -11.07902 -11.04655 -10.80957 -10.64202 -10.49371 -10.45541 -10.37461 -10.14254 -9.98318 -9.81380 -9.55283 -9.19156 -8.62506 -8.44267 -7.52748 -6.03771 -4.04631 0.81065 1.26379 1.33709 2.60867 2.77756 3.33156 3.41022 3.50547 3.74892 4.30014 4.41581 4.43137 4.66607 5.11318 5.15603 5.18554 5.19505 5.23738 5.28107 5.31027 5.32161 5.33550 5.54342 5.65494 5.68980 5.73778 5.76268 5.82861 5.91780 5.96066 6.00791 6.06069 6.16239 6.29742 6.32045 6.43934 6.66751 6.73084 6.79873 7.05607 7.10613 7.18962 7.51351 7.79622 7.92599 8.07571 8.43277 9.06734 9.60744 11.06753 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009170 B = 0.005574 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.583758 B = 5022.384862 C = 7305.488568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.110 4.110 5 C 0.055 3.945 6 N -0.544 5.544 7 C 0.196 3.804 8 C -0.511 4.511 9 H 0.072 0.928 10 C 0.058 3.942 11 N -0.899 5.899 12 Si 0.894 3.106 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.265 3.735 17 N -0.560 5.560 18 C 0.559 3.441 19 O -0.401 6.401 20 S -0.166 6.166 21 C -0.067 4.067 22 C -0.124 4.124 23 C -0.123 4.123 24 C 0.535 3.465 25 O -0.467 6.467 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.062 0.938 37 H -0.008 1.008 38 H 0.047 0.953 39 H 0.260 0.740 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.104 0.401 -4.962 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.147 4.147 5 C -0.073 4.073 6 N -0.270 5.270 7 C 0.072 3.928 8 C -0.549 4.549 9 H 0.090 0.910 10 C -0.143 4.143 11 N -0.539 5.539 12 Si 0.722 3.278 13 H -0.193 1.193 14 H -0.212 1.212 15 H -0.210 1.210 16 C 0.051 3.949 17 N -0.306 5.306 18 C 0.236 3.764 19 O -0.269 6.269 20 S 0.060 5.940 21 C -0.181 4.181 22 C -0.182 4.182 23 C -0.182 4.182 24 C 0.320 3.680 25 O -0.338 6.338 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.010 0.990 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.161 0.718 -3.656 19.520 hybrid contribution 1.501 -0.639 -0.691 1.772 sum -17.661 0.079 -4.348 18.188 Atomic orbital electron populations 1.21868 0.95770 1.01605 1.01015 1.21095 0.95496 0.96095 0.98812 1.21809 1.01187 0.96035 1.01124 1.21654 1.01962 0.94257 0.96868 1.22198 0.99138 0.94639 0.91322 1.61858 1.13047 1.14593 1.37470 1.19807 0.77886 0.97720 0.97370 1.21324 0.91789 1.45476 0.96331 0.90973 1.24947 0.96724 0.95397 0.97242 1.69964 1.01739 1.49177 1.32978 0.86482 0.78785 0.77926 0.84629 1.19323 1.21159 1.21047 1.22400 0.78848 0.93874 0.99741 1.46606 1.11455 1.64816 1.07742 1.21536 0.92978 0.78185 0.83668 1.90981 1.45512 1.44846 1.45607 1.87700 1.05262 1.91288 1.09722 1.23800 0.97697 1.04022 0.92603 1.21807 1.00520 0.92790 1.03109 1.21808 0.99337 0.93485 1.03558 1.19705 0.85756 0.75228 0.87329 1.90775 1.85770 1.45092 1.12172 0.92608 0.92954 0.93330 0.91612 0.92590 0.93245 0.92823 0.91691 0.90906 0.95542 0.92009 0.99040 0.93500 0.92998 0.91286 0.86303 0.89841 0.90003 0.90741 0.90960 0.89977 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.95 37.16 0.33 -1.44 16 2 C -0.10 -1.33 2.92 -90.62 -0.26 -1.59 16 3 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 4 C -0.11 -1.88 4.64 -26.73 -0.12 -2.00 16 5 C 0.06 1.01 4.43 -3.82 -0.02 0.99 16 6 N -0.54 -11.51 4.56 -239.97 -1.09 -12.60 16 7 C 0.20 4.95 4.58 -4.97 -0.02 4.93 16 8 C -0.51 -14.23 8.38 -34.44 -0.29 -14.52 16 9 H 0.07 2.08 7.16 -52.49 -0.38 1.70 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 12 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.26 5.11 4.85 -63.31 -0.31 4.80 16 17 N -0.56 -9.35 2.65 -122.78 -0.33 -9.68 16 18 C 0.56 9.72 8.34 53.48 0.45 10.16 16 19 O -0.40 -8.53 16.94 5.30 0.09 -8.44 16 20 S -0.17 -2.14 22.30 -107.50 -2.40 -4.53 16 21 C -0.07 -0.72 1.18 -91.47 -0.11 -0.83 16 22 C -0.12 -1.07 8.72 37.16 0.32 -0.74 16 23 C -0.12 -0.98 8.72 37.16 0.32 -0.66 16 24 C 0.53 7.64 5.60 -11.80 -0.07 7.57 16 25 O -0.47 -7.32 15.42 5.59 0.09 -7.23 16 26 H 0.05 0.72 6.56 -51.93 -0.34 0.38 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.41 6.29 -51.93 -0.33 1.08 16 35 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.06 1.07 4.12 -51.93 -0.21 0.85 16 37 H -0.01 -0.22 8.06 -51.93 -0.42 -0.64 16 38 H 0.05 1.26 5.95 -51.93 -0.31 0.95 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 41 H 0.12 2.53 6.54 -51.93 -0.34 2.19 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -30.84 386.03 -9.38 -40.22 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.75 Total: -1.78 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 0.47 Total: 6.77 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.68 Total: -47.94 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.18 Total: -15.67 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -2.40 Total: -4.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.84 -9.38 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753999837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.571 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds