Wall clock time and date at job start Tue Mar 31 2020 15:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47421 * 2 1 4 4 C 1.53002 * 109.47323 * 119.99683 * 2 1 3 5 5 C 1.53008 * 109.46895 * 64.99622 * 4 2 1 6 6 N 1.46901 * 109.46873 * 180.02562 * 5 4 2 7 7 C 1.46907 * 110.99988 * 293.95485 * 6 5 4 8 8 C 1.50701 * 109.47177 * 164.53481 * 7 6 5 9 9 H 1.08001 * 119.99817 * 4.73907 * 8 7 6 10 10 C 1.37876 * 120.00137 * 184.74682 * 8 7 6 11 11 N 1.31516 * 119.99799 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99938 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47071 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46903 * 119.99750 * 12 10 8 15 15 H 1.48496 * 109.46853 * 239.99288 * 12 10 8 16 16 C 1.46900 * 110.99910 * 170.00654 * 6 5 4 17 17 N 1.46507 * 109.46532 * 280.65109 * 16 6 5 18 18 C 1.33475 * 119.36870 * 275.25358 * 17 16 6 19 19 O 1.21571 * 126.16137 * 0.02923 * 18 17 16 20 20 S 1.77283 * 107.67125 * 179.90540 * 18 17 16 21 21 C 1.82467 * 94.26207 * 0.29721 * 20 18 17 22 22 C 1.53001 * 110.70834 * 241.45439 * 21 20 18 23 23 C 1.53004 * 110.70752 * 118.21385 * 21 20 18 24 24 C 1.32242 * 119.37033 * 95.53349 * 17 16 6 25 25 O 1.21239 * 123.09948 * 359.97438 * 24 17 16 26 26 H 1.09001 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46790 * 300.00508 * 1 2 3 28 28 H 1.08996 * 109.47189 * 59.99997 * 1 2 3 29 29 H 1.08997 * 109.47444 * 239.99189 * 2 1 3 30 30 H 1.09002 * 109.47601 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46821 * 299.99912 * 3 2 1 32 32 H 1.09001 * 109.47553 * 59.99959 * 3 2 1 33 33 H 1.09004 * 109.46985 * 305.00485 * 4 2 1 34 34 H 1.09000 * 109.47578 * 184.99934 * 4 2 1 35 35 H 1.08997 * 109.46761 * 60.00951 * 5 4 2 36 36 H 1.08999 * 109.47299 * 299.99951 * 5 4 2 37 37 H 1.09000 * 109.46875 * 284.53564 * 7 6 5 38 38 H 1.08994 * 109.47273 * 44.53280 * 7 6 5 39 39 H 0.97000 * 120.00089 * 180.02562 * 11 10 8 40 40 H 1.08995 * 109.47448 * 40.64556 * 16 6 5 41 41 H 1.08994 * 109.47160 * 160.65404 * 16 6 5 42 42 H 1.09000 * 109.46844 * 173.58457 * 22 21 20 43 43 H 1.08994 * 109.47430 * 293.58500 * 22 21 20 44 44 H 1.09000 * 109.46897 * 53.58995 * 22 21 20 45 45 H 1.09000 * 109.46915 * 306.41216 * 23 21 20 46 46 H 1.08997 * 109.47154 * 66.41600 * 23 21 20 47 47 H 1.08998 * 109.47141 * 186.41325 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1881 6 7 2.1244 -2.8877 2.3879 7 6 3.5927 -2.9291 2.4099 8 6 4.0643 -3.2905 3.7948 9 1 3.3464 -3.5460 4.5602 10 6 5.4122 -3.2947 4.0849 11 7 6.2864 -2.9838 3.1528 12 14 5.9967 -3.7419 5.8018 13 1 4.8241 -4.0484 6.6597 14 1 6.8819 -4.9320 5.7290 15 1 6.7489 -2.6003 6.3816 16 6 1.5582 -4.2399 2.4830 17 7 0.1925 -4.1616 3.0075 18 6 -0.0002 -4.1159 4.3274 19 8 0.8664 -4.1321 5.1799 20 16 -1.7474 -4.0236 4.6133 21 6 -2.1771 -4.0611 2.8404 22 6 -2.9088 -2.7804 2.4338 23 6 -3.0211 -5.2950 2.5143 24 6 -0.8260 -4.1431 2.1642 25 8 -0.6898 -4.1878 0.9603 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 2.0699 -2.6550 0.3005 36 1 0.5489 -2.2723 1.1422 37 1 3.9458 -3.6764 1.6993 38 1 3.9879 -1.9512 2.1351 39 1 7.2347 -2.9871 3.3567 40 1 1.5418 -4.6974 1.4939 41 1 2.1705 -4.8438 3.1527 42 1 -3.0545 -2.7726 1.3536 43 1 -3.8778 -2.7419 2.9313 44 1 -2.3153 -1.9143 2.7266 45 1 -2.5062 -6.1900 2.8635 46 1 -3.9883 -5.2151 3.0106 47 1 -3.1701 -5.3587 1.4364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753999837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:01 Heat of formation + Delta-G solvation = -81.923469 kcal Electronic energy + Delta-G solvation = -27809.178942 eV Core-core repulsion = 24117.810132 eV Total energy + Delta-G solvation = -3691.368810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.92479 -40.09230 -39.05424 -37.19237 -36.60682 -35.56998 -34.51990 -30.63541 -29.59767 -28.52608 -28.01937 -27.16243 -26.17775 -24.70408 -23.94901 -21.87235 -21.11576 -20.78175 -19.96352 -18.76576 -18.35216 -17.94185 -16.90483 -16.84091 -16.63474 -16.18977 -15.92061 -15.79613 -15.56358 -15.48669 -15.05588 -14.52200 -14.34467 -14.26637 -14.00815 -13.74995 -13.66477 -13.58911 -13.23953 -13.15250 -13.05723 -12.83444 -12.70508 -12.54861 -12.51940 -12.27541 -12.17786 -12.03171 -11.69206 -11.65614 -11.52567 -11.45123 -11.32309 -11.13315 -11.02373 -10.62492 -9.68267 -9.31022 -8.24081 -6.31725 -0.40714 0.00899 0.29070 1.33585 1.34748 1.36405 1.51619 1.55557 2.37369 2.64045 3.00775 3.12090 3.53040 3.60306 3.71433 3.86650 3.91730 4.04623 4.08386 4.31071 4.31655 4.53025 4.56269 4.58837 4.64967 4.69704 4.73584 4.76220 4.81606 4.90381 4.99385 5.03270 5.06196 5.07402 5.13869 5.15821 5.18850 5.28516 5.46971 5.47291 5.49610 5.64360 5.84835 5.98777 6.06047 6.26361 6.44112 6.84582 7.37333 8.86660 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009170 B = 0.005574 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.583758 B = 5022.384862 C = 7305.488568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.103 4.103 5 C 0.062 3.938 6 N -0.552 5.552 7 C 0.216 3.784 8 C -0.521 4.521 9 H 0.059 0.941 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.957 3.043 13 H -0.275 1.275 14 H -0.274 1.274 15 H -0.276 1.276 16 C 0.272 3.728 17 N -0.565 5.565 18 C 0.539 3.461 19 O -0.458 6.458 20 S -0.111 6.111 21 C -0.059 4.059 22 C -0.124 4.124 23 C -0.123 4.123 24 C 0.531 3.469 25 O -0.480 6.480 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.018 0.982 36 H 0.077 0.923 37 H -0.031 1.031 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.416 0.838 -5.257 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.141 4.141 5 C -0.066 4.066 6 N -0.277 5.277 7 C 0.090 3.910 8 C -0.560 4.560 9 H 0.077 0.923 10 C -0.187 4.187 11 N -0.569 5.569 12 Si 0.783 3.217 13 H -0.200 1.200 14 H -0.200 1.200 15 H -0.201 1.201 16 C 0.058 3.942 17 N -0.311 5.311 18 C 0.220 3.780 19 O -0.332 6.332 20 S 0.117 5.883 21 C -0.173 4.173 22 C -0.182 4.182 23 C -0.181 4.181 24 C 0.317 3.683 25 O -0.352 6.352 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.096 0.904 37 H -0.014 1.014 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.130 0.870 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.540 1.153 -3.972 22.916 hybrid contribution 2.401 -0.797 -0.669 2.617 sum -20.138 0.356 -4.641 20.669 Atomic orbital electron populations 1.21807 0.93909 1.01496 1.02378 1.21079 0.97002 0.96514 0.96585 1.21785 1.00512 0.95155 1.02408 1.21594 1.00027 0.93874 0.98597 1.22226 0.99722 0.94932 0.89694 1.61769 1.10733 1.16017 1.39223 1.19380 0.80511 0.95605 0.95525 1.21499 0.91932 1.45439 0.97080 0.92313 1.25708 0.96841 0.95290 1.00887 1.70057 1.02118 1.49960 1.34741 0.85511 0.78032 0.78147 0.80050 1.19989 1.19972 1.20108 1.22045 0.80319 0.92540 0.99323 1.46651 1.10877 1.65204 1.08345 1.22255 0.95147 0.77392 0.83213 1.90947 1.48230 1.47086 1.46897 1.87505 0.99203 1.90283 1.11288 1.24130 0.95661 1.06995 0.90470 1.21930 1.01325 0.90673 1.04306 1.21934 0.99901 0.91530 1.04736 1.20386 0.86543 0.74237 0.87089 1.90768 1.86157 1.45529 1.12735 0.93392 0.92516 0.91037 0.91757 0.93733 0.90859 0.92590 0.92474 0.93914 0.96329 0.90427 1.01364 0.95455 0.92630 0.90757 0.89063 0.88539 0.86891 0.91860 0.91353 0.86967 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.95 71.98 0.64 -2.44 16 2 C -0.09 -2.50 2.92 -10.79 -0.03 -2.53 16 3 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 4 C -0.10 -3.64 4.64 30.60 0.14 -3.50 16 5 C 0.06 2.33 4.43 86.31 0.38 2.71 16 6 N -0.55 -24.62 4.56 -913.14 -4.16 -28.78 16 7 C 0.22 11.57 4.58 85.56 0.39 11.96 16 8 C -0.52 -30.53 8.38 25.60 0.21 -30.32 16 9 H 0.06 3.57 7.16 -2.91 -0.02 3.55 16 10 C 0.01 0.66 5.46 84.65 0.46 1.12 16 11 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 12 Si 0.96 46.72 29.54 68.60 2.03 48.74 16 13 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 C 0.27 11.09 4.85 170.80 0.83 11.92 16 17 N -0.57 -19.19 2.65 -781.16 -2.07 -21.26 16 18 C 0.54 19.13 8.34 129.99 1.08 20.21 16 19 O -0.46 -20.51 16.94 -3.94 -0.07 -20.58 16 20 S -0.11 -2.62 22.30 -56.49 -1.26 -3.88 16 21 C -0.06 -1.09 1.18 -11.35 -0.01 -1.11 16 22 C -0.12 -1.64 8.72 71.98 0.63 -1.01 16 23 C -0.12 -1.47 8.72 71.98 0.63 -0.84 16 24 C 0.53 14.54 5.60 88.24 0.49 15.03 16 25 O -0.48 -14.44 15.42 -2.90 -0.04 -14.48 16 26 H 0.05 1.13 6.56 -2.39 -0.02 1.12 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.04 1.75 6.29 -2.39 -0.02 1.74 16 35 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 36 H 0.08 2.68 4.12 -2.39 -0.01 2.67 16 37 H -0.03 -1.79 8.06 -2.39 -0.02 -1.81 16 38 H 0.03 1.57 5.95 -2.39 -0.01 1.56 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.07 2.89 7.11 -2.39 -0.02 2.87 16 41 H 0.09 4.20 6.54 -2.39 -0.02 4.19 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.64 386.03 2.18 -68.46 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.95 Total: 9.14 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 6.52 Total: 18.53 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -5.95 Total: -105.93 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.11 Total: -35.06 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -1.26 Total: -3.88 kcal Total: -70.64 2.18 -68.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753999837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.463 kcal (2) G-P(sol) polarization free energy of solvation -70.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds