Wall clock time and date at job start Tue Mar 31 2020 15:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 C 1.53001 * 109.47048 * 120.00218 * 2 1 3 5 5 O 1.42898 * 113.27997 * 315.76758 * 4 2 1 6 6 C 1.53492 * 114.20490 * 182.70432 * 4 2 1 7 7 N 1.47070 * 87.98673 * 220.34478 * 6 4 2 8 8 C 1.34774 * 136.06181 * 207.09204 * 7 6 4 9 9 O 1.21665 * 119.99898 * 5.41198 * 8 7 6 10 10 C 1.46884 * 120.00277 * 185.42043 * 8 7 6 11 11 C 1.36122 * 125.43571 * 5.45874 * 10 8 7 12 12 C 1.41698 * 107.75002 * 180.02562 * 11 10 8 13 13 C 1.40022 * 133.35361 * 180.02562 * 12 11 10 14 14 C 1.36577 * 119.83098 * 179.97438 * 13 12 11 15 15 C 1.38852 * 120.60466 * 0.02562 * 14 13 12 16 16 C 1.37849 * 120.62947 * 0.02562 * 15 14 13 17 17 C 1.39089 * 119.81445 * 359.67017 * 16 15 14 18 18 N 1.37835 * 133.16052 * 179.62056 * 17 16 15 19 19 C 1.36884 * 125.62178 * 0.75997 * 18 17 16 20 20 H 1.08000 * 120.00526 * 139.96161 * 19 18 17 21 21 C 1.39012 * 119.99874 * 319.68999 * 19 18 17 22 22 N 1.31353 * 119.99876 * 353.04132 * 21 19 18 23 23 Si 1.86799 * 120.00108 * 173.03506 * 21 19 18 24 24 H 1.48495 * 109.47248 * 355.00192 * 23 21 19 25 25 H 1.48501 * 109.47088 * 114.99988 * 23 21 19 26 26 H 1.48499 * 109.47462 * 234.99682 * 23 21 19 27 27 C 1.47067 * 87.88287 * 27.33943 * 7 6 4 28 28 H 1.09001 * 109.47424 * 65.09922 * 1 2 3 29 29 H 1.09001 * 109.47558 * 185.10063 * 1 2 3 30 30 H 1.08998 * 109.47469 * 305.10091 * 1 2 3 31 31 H 1.09003 * 109.47359 * 240.00076 * 2 1 3 32 32 H 1.09003 * 109.47278 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46897 * 299.99990 * 3 2 1 34 34 H 1.09003 * 109.46912 * 59.99802 * 3 2 1 35 35 H 0.96696 * 113.99854 * 176.60332 * 5 4 2 36 36 H 1.08999 * 113.47028 * 105.56359 * 6 4 2 37 37 H 1.09000 * 113.47117 * 335.12070 * 6 4 2 38 38 H 1.08004 * 126.12527 * 359.96407 * 11 10 8 39 39 H 1.08005 * 120.08591 * 359.97438 * 13 12 11 40 40 H 1.07999 * 119.69926 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.69101 * 179.97438 * 15 14 13 42 42 H 1.07998 * 120.09503 * 179.97438 * 16 15 14 43 43 H 0.96998 * 119.99905 * 185.00773 * 22 21 19 44 44 H 1.09004 * 113.46289 * 87.43992 * 27 7 6 45 45 H 1.09000 * 113.46992 * 217.88081 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.3415 -0.3513 2.4397 6 6 3.5682 -0.7277 1.3924 7 7 3.4671 -2.1200 1.8552 8 6 4.1907 -2.9337 2.6493 9 8 5.1530 -2.4971 3.2522 10 6 3.8177 -4.3478 2.7868 11 6 2.8331 -4.9759 2.0875 12 6 2.7943 -6.3265 2.5144 13 6 2.0039 -7.4254 2.1563 14 6 2.2075 -8.6339 2.7592 15 6 3.1923 -8.7844 3.7264 16 6 3.9823 -7.7171 4.0964 17 6 3.7979 -6.4780 3.4920 18 7 4.4090 -5.2524 3.6484 19 6 5.4369 -4.9782 4.5097 20 1 6.2450 -4.3329 4.1982 21 6 5.4379 -5.5258 5.7874 22 7 4.3910 -6.1927 6.2170 23 14 6.9282 -5.3133 6.8935 24 1 8.0120 -4.6343 6.1389 25 1 6.5561 -4.4912 8.0729 26 1 7.4012 -6.6455 7.3482 27 6 2.2321 -2.2356 1.0650 28 1 -0.3634 0.4327 -0.9321 29 1 -0.3634 -1.0236 0.0914 30 1 -0.3634 0.5909 0.8407 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6202 -0.8389 3.2268 36 1 3.9355 -0.0421 2.1560 37 1 4.0936 -0.6230 0.4432 38 1 2.1951 -4.5252 1.3417 39 1 1.2352 -7.3177 1.4053 40 1 1.5964 -9.4800 2.4816 41 1 3.3403 -9.7467 4.1939 42 1 4.7454 -7.8437 4.8500 43 1 4.3616 -6.5122 7.1323 44 1 2.4053 -2.5283 0.0294 45 1 1.4611 -2.8346 1.5496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765589367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:03 Heat of formation + Delta-G solvation = 17.291505 kcal Electronic energy + Delta-G solvation = -28433.375012 eV Core-core repulsion = 24610.864535 eV Total energy + Delta-G solvation = -3822.510477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.94499 -40.14340 -37.71573 -35.78112 -35.01121 -34.41485 -33.64806 -30.72660 -29.30611 -28.96646 -27.60956 -27.32494 -25.71398 -24.77741 -23.55159 -21.98659 -20.77446 -20.07416 -19.83362 -18.84788 -17.76525 -16.85318 -16.10312 -15.91963 -15.67614 -15.29912 -14.78989 -14.76480 -14.49195 -14.14905 -14.10269 -13.51383 -13.30039 -13.03863 -12.98034 -12.86684 -12.75953 -12.34239 -12.27147 -12.15646 -12.02857 -11.72357 -11.48455 -11.40839 -11.18737 -11.11752 -11.03178 -10.81536 -10.68488 -10.49884 -10.22553 -9.83627 -9.68133 -9.24010 -9.10527 -8.60129 -8.48248 -7.14617 -6.80565 -6.53548 -4.43959 1.82967 2.79613 2.95753 3.02827 3.06921 3.13717 3.14798 3.84492 3.98829 4.10435 4.20413 4.46003 4.63046 4.75352 4.81114 5.05243 5.10321 5.13998 5.27828 5.36223 5.41106 5.54746 5.56517 5.66644 5.71673 5.78440 5.82315 5.82769 6.00695 6.01193 6.06976 6.14016 6.21050 6.28222 6.35129 6.61368 6.74466 6.90299 7.05922 7.15162 7.20261 7.50700 7.52796 7.61880 7.73441 7.94561 8.01552 8.13386 8.45007 8.68548 8.92076 9.32295 10.23966 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.004129 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.082484 B = 6779.575143 C = 8446.749034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.148 4.148 4 C 0.107 3.893 5 O -0.530 6.530 6 C 0.079 3.921 7 N -0.647 5.647 8 C 0.618 3.382 9 O -0.528 6.528 10 C -0.024 4.024 11 C -0.207 4.207 12 C -0.126 4.126 13 C -0.097 4.097 14 C -0.153 4.153 15 C -0.161 4.161 16 C -0.036 4.036 17 C 0.088 3.912 18 N -0.233 5.233 19 C -0.329 4.329 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.830 5.830 23 Si 0.937 3.063 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.070 3.930 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.386 0.614 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.281 0.719 44 H 0.091 0.909 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 7.418 -10.086 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.205 4.205 4 C 0.064 3.936 5 O -0.336 6.336 6 C -0.045 4.045 7 N -0.385 5.385 8 C 0.412 3.588 9 O -0.404 6.404 10 C -0.141 4.141 11 C -0.234 4.234 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.172 4.172 15 C -0.181 4.181 16 C -0.055 4.055 17 C -0.027 4.027 18 N 0.107 4.893 19 C -0.458 4.458 20 H 0.135 0.865 21 C -0.165 4.165 22 N -0.460 5.460 23 Si 0.762 3.238 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.054 4.054 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.438 7.856 -9.557 13.514 hybrid contribution 0.862 -0.438 1.111 1.473 sum -4.577 7.417 -8.446 12.136 Atomic orbital electron populations 1.21697 0.94047 1.02359 1.01704 1.20942 0.97110 0.96417 0.94109 1.21840 1.01031 0.95402 1.02224 1.22509 0.90494 0.93320 0.87269 1.86399 1.63487 1.65921 1.17751 1.23710 0.96899 0.83692 1.00166 1.49172 1.27749 1.13649 1.47978 1.16777 0.80773 0.83720 0.77569 1.90784 1.27652 1.76255 1.45756 1.19402 1.00750 0.89704 1.04209 1.20480 1.02562 0.93810 1.06588 1.17969 1.00187 0.94069 1.00843 1.19982 0.99234 0.91997 1.00384 1.20270 1.00294 0.96642 0.99983 1.20560 0.98900 0.97710 1.00967 1.20272 0.99231 0.89563 0.96469 1.18194 0.98359 0.86903 0.99252 1.39932 1.21914 1.03746 1.23694 1.20159 1.00444 1.31345 0.93818 0.86454 1.25744 0.98569 0.94529 0.97669 1.69980 1.27523 1.30857 1.17689 0.85682 0.80310 0.78514 0.79339 1.18458 1.19848 1.19862 1.23996 0.87250 0.97079 0.97087 0.92918 0.92474 0.91769 0.89569 0.92539 0.92481 0.91936 0.76548 0.90101 0.89427 0.85527 0.88037 0.88091 0.87802 0.86134 0.90848 0.89097 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.80 37.16 0.33 -0.87 16 2 C -0.07 -0.58 2.70 -90.62 -0.24 -0.82 16 3 C -0.15 -1.19 8.97 37.16 0.33 -0.85 16 4 C 0.11 1.18 1.20 -89.97 -0.11 1.08 16 5 O -0.53 -6.54 12.69 -35.23 -0.45 -6.99 16 6 C 0.08 1.01 7.01 -8.51 -0.06 0.96 16 7 N -0.65 -10.78 3.51 -186.52 -0.66 -11.43 16 8 C 0.62 13.83 8.02 -12.76 -0.10 13.73 16 9 O -0.53 -13.55 15.75 5.22 0.08 -13.47 16 10 C -0.02 -0.57 6.76 -82.25 -0.56 -1.13 16 11 C -0.21 -4.49 9.89 -39.02 -0.39 -4.88 16 12 C -0.13 -2.95 6.16 -106.89 -0.66 -3.61 16 13 C -0.10 -1.97 10.06 -39.51 -0.40 -2.37 16 14 C -0.15 -2.99 9.97 -39.95 -0.40 -3.39 16 15 C -0.16 -3.37 10.02 -39.50 -0.40 -3.77 16 16 C -0.04 -0.87 8.39 -39.41 -0.33 -1.20 16 17 C 0.09 2.27 6.07 -83.83 -0.51 1.76 16 18 N -0.23 -6.27 2.84 -56.08 -0.16 -6.43 16 19 C -0.33 -9.04 8.87 -15.01 -0.13 -9.17 16 20 H 0.12 3.31 6.82 -52.49 -0.36 2.95 16 21 C 0.05 1.18 4.84 -17.47 -0.08 1.10 16 22 N -0.83 -21.94 10.03 55.50 0.56 -21.38 16 23 Si 0.94 20.03 29.56 -169.99 -5.03 15.01 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C 0.07 0.88 5.99 -8.37 -0.05 0.83 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.62 7.77 -51.93 -0.40 0.21 16 31 H 0.09 0.63 7.84 -51.93 -0.41 0.22 16 32 H 0.06 0.44 7.33 -51.93 -0.38 0.06 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.39 4.76 8.84 45.56 0.40 5.16 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 0.96 7.99 -51.93 -0.42 0.55 16 38 H 0.13 2.26 5.40 -52.48 -0.28 1.98 16 39 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.12 3.04 6.24 -52.49 -0.33 2.71 16 43 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 45 H 0.09 1.19 6.84 -51.93 -0.36 0.83 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -31.68 365.57 -9.35 -41.03 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.45 Total: 10.78 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -3.75 Total: -12.62 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.26 Total: -39.24 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.36 Total: -20.46 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.68 -9.35 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765589367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.317 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds