Wall clock time and date at job start Tue Mar 31 2020 15:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 C 1.53001 * 109.47048 * 120.00218 * 2 1 3 5 5 O 1.42898 * 113.27997 * 315.76758 * 4 2 1 6 6 C 1.53492 * 114.20490 * 182.70432 * 4 2 1 7 7 N 1.47070 * 87.98673 * 220.34478 * 6 4 2 8 8 C 1.34774 * 136.06181 * 207.09204 * 7 6 4 9 9 O 1.21665 * 119.99898 * 5.41198 * 8 7 6 10 10 C 1.46884 * 120.00277 * 185.42043 * 8 7 6 11 11 C 1.36122 * 125.43571 * 5.45874 * 10 8 7 12 12 C 1.41698 * 107.75002 * 180.02562 * 11 10 8 13 13 C 1.40022 * 133.35361 * 180.02562 * 12 11 10 14 14 C 1.36577 * 119.83098 * 179.97438 * 13 12 11 15 15 C 1.38852 * 120.60466 * 0.02562 * 14 13 12 16 16 C 1.37849 * 120.62947 * 0.02562 * 15 14 13 17 17 C 1.39089 * 119.81445 * 359.67017 * 16 15 14 18 18 N 1.37835 * 133.16052 * 179.62056 * 17 16 15 19 19 C 1.36884 * 125.62178 * 0.75997 * 18 17 16 20 20 H 1.08000 * 120.00526 * 139.96161 * 19 18 17 21 21 C 1.39012 * 119.99874 * 319.68999 * 19 18 17 22 22 N 1.31353 * 119.99876 * 353.04132 * 21 19 18 23 23 Si 1.86799 * 120.00108 * 173.03506 * 21 19 18 24 24 H 1.48495 * 109.47248 * 355.00192 * 23 21 19 25 25 H 1.48501 * 109.47088 * 114.99988 * 23 21 19 26 26 H 1.48499 * 109.47462 * 234.99682 * 23 21 19 27 27 C 1.47067 * 87.88287 * 27.33943 * 7 6 4 28 28 H 1.09001 * 109.47424 * 65.09922 * 1 2 3 29 29 H 1.09001 * 109.47558 * 185.10063 * 1 2 3 30 30 H 1.08998 * 109.47469 * 305.10091 * 1 2 3 31 31 H 1.09003 * 109.47359 * 240.00076 * 2 1 3 32 32 H 1.09003 * 109.47278 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46897 * 299.99990 * 3 2 1 34 34 H 1.09003 * 109.46912 * 59.99802 * 3 2 1 35 35 H 0.96696 * 113.99854 * 176.60332 * 5 4 2 36 36 H 1.08999 * 113.47028 * 105.56359 * 6 4 2 37 37 H 1.09000 * 113.47117 * 335.12070 * 6 4 2 38 38 H 1.08004 * 126.12527 * 359.96407 * 11 10 8 39 39 H 1.08005 * 120.08591 * 359.97438 * 13 12 11 40 40 H 1.07999 * 119.69926 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.69101 * 179.97438 * 15 14 13 42 42 H 1.07998 * 120.09503 * 179.97438 * 16 15 14 43 43 H 0.96998 * 119.99905 * 185.00773 * 22 21 19 44 44 H 1.09004 * 113.46289 * 87.43992 * 27 7 6 45 45 H 1.09000 * 113.46992 * 217.88081 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.3415 -0.3513 2.4397 6 6 3.5682 -0.7277 1.3924 7 7 3.4671 -2.1200 1.8552 8 6 4.1907 -2.9337 2.6493 9 8 5.1530 -2.4971 3.2522 10 6 3.8177 -4.3478 2.7868 11 6 2.8331 -4.9759 2.0875 12 6 2.7943 -6.3265 2.5144 13 6 2.0039 -7.4254 2.1563 14 6 2.2075 -8.6339 2.7592 15 6 3.1923 -8.7844 3.7264 16 6 3.9823 -7.7171 4.0964 17 6 3.7979 -6.4780 3.4920 18 7 4.4090 -5.2524 3.6484 19 6 5.4369 -4.9782 4.5097 20 1 6.2450 -4.3329 4.1982 21 6 5.4379 -5.5258 5.7874 22 7 4.3910 -6.1927 6.2170 23 14 6.9282 -5.3133 6.8935 24 1 8.0120 -4.6343 6.1389 25 1 6.5561 -4.4912 8.0729 26 1 7.4012 -6.6455 7.3482 27 6 2.2321 -2.2356 1.0650 28 1 -0.3634 0.4327 -0.9321 29 1 -0.3634 -1.0236 0.0914 30 1 -0.3634 0.5909 0.8407 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6202 -0.8389 3.2268 36 1 3.9355 -0.0421 2.1560 37 1 4.0936 -0.6230 0.4432 38 1 2.1951 -4.5252 1.3417 39 1 1.2352 -7.3177 1.4053 40 1 1.5964 -9.4800 2.4816 41 1 3.3403 -9.7467 4.1939 42 1 4.7454 -7.8437 4.8500 43 1 4.3616 -6.5122 7.1323 44 1 2.4053 -2.5283 0.0294 45 1 1.4611 -2.8346 1.5496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765589367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:02 Heat of formation + Delta-G solvation = -3.264283 kcal Electronic energy + Delta-G solvation = -28434.266378 eV Core-core repulsion = 24610.864535 eV Total energy + Delta-G solvation = -3823.401843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.36954 -41.61033 -39.30254 -37.45855 -36.21186 -35.48589 -35.21292 -32.52176 -30.82084 -30.68926 -28.83422 -28.30311 -26.97589 -26.42920 -24.87036 -23.34722 -22.44137 -21.64951 -20.80451 -20.37976 -19.49214 -18.06831 -17.71049 -17.32650 -17.17270 -16.71987 -16.48311 -16.21743 -15.76952 -15.45095 -15.19577 -14.88082 -14.76147 -14.60122 -14.49928 -14.12714 -13.98514 -13.66334 -13.52378 -13.47478 -13.34621 -13.19905 -12.87330 -12.82138 -12.58452 -12.36439 -12.18850 -12.00691 -11.88552 -11.75559 -11.66429 -11.48519 -11.00875 -10.85907 -10.70159 -10.37452 -9.84446 -8.95713 -8.62056 -8.32455 -6.42433 0.12514 1.10486 1.26529 1.32551 1.39343 1.42949 1.62772 2.09558 2.44942 2.84727 2.94730 3.07866 3.14304 3.38447 3.54817 3.80225 3.88943 4.21842 4.31303 4.38626 4.44458 4.44723 4.46563 4.53203 4.57546 4.66719 4.74779 4.79845 4.87030 4.95469 4.97834 5.05169 5.11810 5.14674 5.16227 5.24666 5.31251 5.39664 5.47697 5.51147 5.61422 5.74358 5.92585 5.99813 6.26513 6.33082 6.46783 6.57760 6.62199 6.91612 7.20707 7.44777 8.35495 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.004129 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.082484 B = 6779.575143 C = 8446.749034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.148 4.148 4 C 0.122 3.878 5 O -0.538 6.538 6 C 0.073 3.927 7 N -0.647 5.647 8 C 0.610 3.390 9 O -0.580 6.580 10 C -0.053 4.053 11 C -0.182 4.182 12 C -0.152 4.152 13 C -0.089 4.089 14 C -0.153 4.153 15 C -0.144 4.144 16 C -0.079 4.079 17 C 0.061 3.939 18 N -0.268 5.268 19 C -0.361 4.361 20 H 0.092 0.908 21 C 0.010 3.990 22 N -0.858 5.858 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.267 1.267 26 H -0.257 1.257 27 C 0.066 3.934 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.383 0.617 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.131 0.869 42 H 0.097 0.903 43 H 0.283 0.717 44 H 0.125 0.875 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 6.940 -12.848 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C -0.205 4.205 4 C 0.080 3.920 5 O -0.343 6.343 6 C -0.049 4.049 7 N -0.382 5.382 8 C 0.403 3.597 9 O -0.461 6.461 10 C -0.169 4.169 11 C -0.209 4.209 12 C -0.157 4.157 13 C -0.108 4.108 14 C -0.172 4.172 15 C -0.165 4.165 16 C -0.099 4.099 17 C -0.053 4.053 18 N 0.069 4.931 19 C -0.489 4.489 20 H 0.110 0.890 21 C -0.198 4.198 22 N -0.489 5.489 23 Si 0.819 3.181 24 H -0.192 1.192 25 H -0.192 1.192 26 H -0.181 1.181 27 C -0.056 4.056 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.186 0.814 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.149 0.851 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.143 0.857 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.899 7.406 -12.372 16.442 hybrid contribution 1.424 -0.299 1.773 2.294 sum -6.476 7.107 -10.599 14.310 Atomic orbital electron populations 1.21688 0.93745 1.02205 1.02042 1.21048 0.97281 0.96619 0.93171 1.21845 1.01203 0.95038 1.02404 1.22584 0.88970 0.92644 0.87844 1.86417 1.63674 1.66048 1.18192 1.24088 0.98881 0.81164 1.00748 1.49198 1.27950 1.14530 1.46529 1.16783 0.80784 0.83808 0.78292 1.90736 1.30080 1.77024 1.48283 1.20079 1.01787 0.90870 1.04139 1.20937 1.01240 0.93066 1.05694 1.18471 1.00527 0.95710 1.00954 1.20468 0.98844 0.91016 1.00434 1.20758 0.99775 0.97943 0.98677 1.20997 0.97602 0.97659 1.00220 1.20311 1.01026 0.90696 0.97863 1.18756 0.99136 0.87149 1.00256 1.40125 1.23013 1.04822 1.25105 1.20002 1.01189 1.32589 0.95158 0.89036 1.26501 1.01092 0.93944 0.98239 1.70062 1.29087 1.31818 1.17930 0.84825 0.76889 0.79022 0.77356 1.19192 1.19232 1.18118 1.24381 0.85034 0.98196 0.98011 0.91004 0.92514 0.93429 0.86964 0.92302 0.90644 0.93483 0.76877 0.91518 0.86588 0.81429 0.83894 0.83540 0.85079 0.88451 0.90634 0.85715 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.80 71.98 0.63 -1.29 16 2 C -0.06 -0.86 2.70 -10.79 -0.03 -0.88 16 3 C -0.15 -1.96 8.97 71.98 0.65 -1.31 16 4 C 0.12 2.44 1.20 -10.37 -0.01 2.43 16 5 O -0.54 -12.86 12.69 -148.98 -1.89 -14.75 16 6 C 0.07 1.80 7.01 83.18 0.58 2.38 16 7 N -0.65 -21.26 3.51 -862.75 -3.03 -24.29 16 8 C 0.61 28.47 8.02 86.51 0.69 29.17 16 9 O -0.58 -31.92 15.75 -4.24 -0.07 -31.99 16 10 C -0.05 -2.67 6.76 39.91 0.27 -2.40 16 11 C -0.18 -7.73 9.89 22.63 0.22 -7.51 16 12 C -0.15 -6.95 6.16 -21.33 -0.13 -7.09 16 13 C -0.09 -3.30 10.06 22.31 0.22 -3.08 16 14 C -0.15 -5.38 9.97 22.03 0.22 -5.16 16 15 C -0.14 -5.84 10.02 22.32 0.22 -5.61 16 16 C -0.08 -3.96 8.39 22.38 0.19 -3.77 16 17 C 0.06 3.28 6.07 39.06 0.24 3.51 16 18 N -0.27 -15.30 2.84 -331.35 -0.94 -16.24 16 19 C -0.36 -21.42 8.87 84.09 0.75 -20.68 16 20 H 0.09 5.69 6.82 -2.91 -0.02 5.67 16 21 C 0.01 0.53 4.84 84.95 0.41 0.94 16 22 N -0.86 -47.82 10.03 21.67 0.22 -47.60 16 23 Si 1.00 43.50 29.56 68.60 2.03 45.53 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 C 0.07 1.47 5.99 83.26 0.50 1.97 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.82 7.77 -2.39 -0.02 0.80 16 31 H 0.11 1.04 7.84 -2.39 -0.02 1.02 16 32 H 0.06 0.75 7.33 -2.39 -0.02 0.74 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.38 9.58 8.84 -74.06 -0.65 8.93 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.12 2.24 7.99 -2.39 -0.02 2.23 16 38 H 0.17 5.44 5.40 -2.91 -0.02 5.43 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.10 5.21 6.24 -2.91 -0.02 5.20 16 43 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.13 2.04 7.89 -2.39 -0.02 2.02 16 45 H 0.09 2.06 6.84 -2.39 -0.02 2.05 16 Total: -1.00 -76.31 365.57 2.31 -74.00 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.37 Total: 33.71 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.62 Total: -18.37 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -3.76 Total: -88.13 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -1.96 Total: -46.74 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.31 2.31 -74.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765589367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.736 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds