Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.46947 * 2 1 4 4 C 1.38149 * 126.31353 * 274.63846 * 3 2 1 5 5 C 1.47262 * 126.41838 * 359.97438 * 4 3 2 6 6 O 1.21523 * 120.00483 * 0.02562 * 5 4 3 7 7 O 1.34762 * 119.99567 * 179.97438 * 5 4 3 8 8 C 1.45203 * 116.99928 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47296 * 330.00620 * 8 7 5 10 10 C 1.53002 * 109.46803 * 90.00222 * 8 7 5 11 11 C 1.50703 * 109.47281 * 210.00122 * 8 7 5 12 12 H 1.08004 * 119.99535 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99844 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00238 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99600 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47310 * 90.00153 * 15 13 11 17 17 H 1.48503 * 109.46892 * 210.00138 * 15 13 11 18 18 H 1.48503 * 109.47433 * 329.99820 * 15 13 11 19 19 C 1.41380 * 107.15385 * 180.24505 * 4 3 2 20 20 N 1.30462 * 108.05875 * 359.55354 * 19 4 3 21 21 N 1.34508 * 126.31620 * 94.62071 * 3 2 1 22 22 C 1.40156 * 125.75838 * 359.97438 * 21 3 2 23 23 C 1.38863 * 120.06640 * 54.55223 * 22 21 3 24 24 C 1.38100 * 119.93356 * 179.71632 * 23 22 21 25 25 C 1.38301 * 120.06326 * 0.55691 * 24 23 22 26 26 C 1.38265 * 120.13596 * 359.72286 * 25 24 23 27 27 C 1.38137 * 120.06699 * 359.97438 * 26 25 24 28 28 C 1.50703 * 120.03562 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47592 * 299.99914 * 1 2 3 31 31 H 1.09004 * 109.47381 * 60.00579 * 1 2 3 32 32 H 1.09005 * 109.47614 * 239.99629 * 2 1 3 33 33 H 1.09011 * 109.46896 * 119.99898 * 2 1 3 34 34 H 1.09010 * 109.46915 * 60.00137 * 10 8 7 35 35 H 1.09001 * 109.47293 * 300.00418 * 10 8 7 36 36 H 1.09002 * 109.47180 * 179.97438 * 10 8 7 37 37 H 0.97005 * 119.99860 * 180.02562 * 14 13 11 38 38 H 1.08005 * 125.97290 * 179.74196 * 19 4 3 39 39 H 1.08010 * 120.03592 * 359.97438 * 23 22 21 40 40 H 1.07996 * 119.96791 * 180.27859 * 24 23 22 41 41 H 1.07996 * 119.93243 * 179.69342 * 25 24 23 42 42 H 1.07998 * 119.96743 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47180 * 264.39451 * 28 27 26 44 44 H 1.09008 * 109.46828 * 24.39584 * 28 27 26 45 45 H 1.08997 * 109.47379 * 144.39340 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2200 2.2222 -1.1095 5 6 1.9676 1.8478 -2.5112 6 8 1.5521 0.7374 -2.7783 7 8 2.1964 2.7369 -3.4977 8 6 1.9260 2.2991 -4.8555 9 1 2.0873 1.2236 -4.9294 10 6 0.4749 2.6231 -5.2164 11 6 2.8516 3.0124 -5.8071 12 1 3.5713 3.7234 -5.4291 13 6 2.7794 2.7574 -7.1602 14 7 1.9026 1.8920 -7.6204 15 14 3.9272 3.6412 -8.3396 16 1 5.1707 2.8472 -8.5084 17 1 3.2583 3.7993 -9.6560 18 1 4.2650 4.9796 -7.7921 19 6 2.7060 3.4669 -0.6475 20 7 2.7910 3.4103 0.6531 21 7 2.3801 2.1428 1.0803 22 6 2.3371 1.7005 2.4095 23 6 2.9982 0.5359 2.7769 24 6 2.9589 0.1057 4.0886 25 6 2.2525 0.8273 5.0336 26 6 1.5884 1.9841 4.6696 27 6 1.6292 2.4229 3.3604 28 6 0.9056 3.6842 2.9646 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 0.3136 3.6986 -5.1424 35 1 -0.1946 2.1072 -4.5280 36 1 0.2720 2.2949 -6.2358 37 1 1.8522 1.7124 -8.5723 38 1 2.9593 4.3172 -1.2634 39 1 3.5461 -0.0307 2.0384 40 1 3.4766 -0.7975 4.3759 41 1 2.2191 0.4863 6.0577 42 1 1.0372 2.5453 5.4096 43 1 -0.0761 3.4297 2.5652 44 1 0.7874 4.3247 3.8387 45 1 1.4821 4.2104 2.2039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770873327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = 8.345923 kcal Electronic energy + Delta-G solvation = -27752.979967 eV Core-core repulsion = 23930.081581 eV Total energy + Delta-G solvation = -3822.898387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84330 -39.56921 -38.85435 -35.61650 -34.29801 -33.66562 -33.16067 -32.72529 -29.94159 -29.57837 -28.98940 -27.14584 -25.28916 -24.73719 -23.13192 -22.61335 -22.32291 -21.03264 -20.07261 -19.14690 -17.78126 -16.74327 -16.35369 -16.29165 -15.99234 -15.29880 -15.03438 -14.89073 -14.51062 -14.28721 -14.23003 -14.08880 -13.86406 -13.55145 -13.21300 -12.94587 -12.65924 -12.50557 -12.24972 -12.14536 -11.91444 -11.74565 -11.57819 -11.54099 -11.19714 -11.16292 -11.01442 -10.80414 -10.69426 -10.30362 -10.24011 -9.96548 -9.56279 -9.45193 -9.19709 -8.99314 -8.84196 -8.48331 -8.41266 -6.14532 -4.20773 0.62122 0.91599 1.59693 2.18238 2.28282 3.23811 3.27541 3.32958 3.37116 3.78387 3.83931 4.35167 4.39033 4.41122 4.44323 4.61658 4.82950 4.85729 4.89384 5.06461 5.18560 5.21353 5.26932 5.32967 5.37365 5.44375 5.45946 5.50033 5.65060 5.82948 5.89928 5.93986 6.02908 6.03970 6.11746 6.18698 6.25814 6.36775 6.52606 6.72001 6.95583 6.98310 7.00238 7.24703 7.53771 7.65036 7.78898 8.00104 8.19942 8.72696 8.97169 9.44597 10.92961 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.002704 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.100472 B =10354.100164 C =10680.231819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C 0.165 3.835 4 C -0.261 4.261 5 C 0.532 3.468 6 O -0.526 6.526 7 O -0.352 6.352 8 C 0.218 3.782 9 H 0.047 0.953 10 C -0.154 4.154 11 C -0.519 4.519 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.911 3.089 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.110 3.890 20 N -0.299 5.299 21 N -0.320 5.320 22 C 0.143 3.857 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.111 4.111 27 C -0.063 4.063 28 C -0.127 4.127 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.016 0.984 36 H 0.098 0.902 37 H 0.265 0.735 38 H 0.203 0.797 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -2.333 24.770 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C 0.036 3.964 4 C -0.274 4.274 5 C 0.377 3.623 6 O -0.418 6.418 7 O -0.268 6.268 8 C 0.166 3.834 9 H 0.065 0.935 10 C -0.212 4.212 11 C -0.557 4.557 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.738 3.262 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.078 4.078 20 N -0.115 5.115 21 N -0.094 5.094 22 C 0.053 3.947 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.065 4.065 28 C -0.184 4.184 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.220 0.780 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.410 -2.073 25.593 25.716 hybrid contribution 0.381 -0.030 -1.522 1.569 sum -1.029 -2.103 24.071 24.185 Atomic orbital electron populations 1.21613 0.93191 1.02523 1.02292 1.20534 0.97529 0.88207 1.04683 1.21601 0.94053 0.95107 0.85619 1.19393 1.19653 0.96509 0.91811 1.19764 0.74346 0.82990 0.85209 1.90732 1.44041 1.22397 1.84598 1.86530 1.77579 1.43518 1.19125 1.20606 0.93790 0.97152 0.71898 0.93539 1.22158 0.96336 0.99290 1.03412 1.21039 1.18771 1.25211 0.90659 0.91304 1.24875 0.95948 0.95297 0.97879 1.69901 1.34705 1.33710 1.14458 0.86291 0.80311 0.79941 0.79690 1.20452 1.21003 1.19589 1.24374 0.94337 0.97879 0.91193 1.77246 1.23447 0.97478 1.13339 1.45399 1.50031 1.10426 1.03558 1.17230 1.00604 0.96038 0.80834 1.21192 0.98605 0.96002 0.97362 1.21010 0.99692 1.00357 0.91968 1.21273 0.96815 0.94864 0.99836 1.21003 1.00112 0.96962 0.94828 1.19939 0.96221 0.97392 0.92935 1.20975 1.00208 0.94110 1.03100 0.91449 0.93376 0.91271 0.86974 0.90683 0.94498 0.96508 0.88324 0.92468 0.78035 0.85050 0.84939 0.85294 0.85071 0.91192 0.91212 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 37.15 0.37 -1.36 16 2 C -0.07 -0.94 5.51 -27.89 -0.15 -1.09 16 3 C 0.16 2.54 6.12 -81.45 -0.50 2.04 16 4 C -0.26 -4.67 6.13 -105.07 -0.64 -5.31 16 5 C 0.53 11.59 7.93 34.40 0.27 11.86 16 6 O -0.53 -12.23 14.13 -19.28 -0.27 -12.50 16 7 O -0.35 -8.50 9.71 -40.66 -0.39 -8.90 16 8 C 0.22 5.89 2.56 -27.88 -0.07 5.82 16 9 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 10 C -0.15 -3.94 9.33 37.16 0.35 -3.60 16 11 C -0.52 -14.63 8.90 -34.44 -0.31 -14.93 16 12 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 15 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.11 1.75 11.87 -16.94 -0.20 1.55 16 20 N -0.30 -4.58 10.32 30.88 0.32 -4.26 16 21 N -0.32 -4.57 3.22 -6.50 -0.02 -4.60 16 22 C 0.14 1.71 5.90 -83.60 -0.49 1.22 16 23 C -0.11 -1.11 8.29 -39.40 -0.33 -1.43 16 24 C -0.11 -0.84 10.04 -39.61 -0.40 -1.24 16 25 C -0.11 -0.76 10.04 -39.55 -0.40 -1.16 16 26 C -0.11 -0.88 9.67 -39.61 -0.38 -1.27 16 27 C -0.06 -0.66 5.90 -104.44 -0.62 -1.28 16 28 C -0.13 -1.30 9.70 36.01 0.35 -0.95 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 32 H 0.11 1.67 6.76 -51.93 -0.35 1.32 16 33 H 0.07 0.80 5.81 -51.92 -0.30 0.50 16 34 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.20 2.82 8.06 -52.48 -0.42 2.40 16 39 H 0.13 1.24 7.46 -52.48 -0.39 0.85 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.56 8.05 -51.92 -0.42 0.14 16 45 H 0.09 1.11 5.83 -51.93 -0.30 0.81 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -31.89 376.88 -8.55 -40.44 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.22 Total: 2.21 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.25 Total: -9.51 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.92 Total: -33.60 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.67 Total: -21.39 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.89 -8.55 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770873327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.787 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds