Wall clock time and date at job start Tue Mar 31 2020 14:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.46947 * 2 1 4 4 C 1.38149 * 126.31353 * 274.63846 * 3 2 1 5 5 C 1.47262 * 126.41838 * 359.97438 * 4 3 2 6 6 O 1.21523 * 120.00483 * 0.02562 * 5 4 3 7 7 O 1.34762 * 119.99567 * 179.97438 * 5 4 3 8 8 C 1.45203 * 116.99928 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47296 * 330.00620 * 8 7 5 10 10 C 1.53002 * 109.46803 * 90.00222 * 8 7 5 11 11 C 1.50703 * 109.47281 * 210.00122 * 8 7 5 12 12 H 1.08004 * 119.99535 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99844 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00238 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99600 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47310 * 90.00153 * 15 13 11 17 17 H 1.48503 * 109.46892 * 210.00138 * 15 13 11 18 18 H 1.48503 * 109.47433 * 329.99820 * 15 13 11 19 19 C 1.41380 * 107.15385 * 180.24505 * 4 3 2 20 20 N 1.30462 * 108.05875 * 359.55354 * 19 4 3 21 21 N 1.34508 * 126.31620 * 94.62071 * 3 2 1 22 22 C 1.40156 * 125.75838 * 359.97438 * 21 3 2 23 23 C 1.38863 * 120.06640 * 54.55223 * 22 21 3 24 24 C 1.38100 * 119.93356 * 179.71632 * 23 22 21 25 25 C 1.38301 * 120.06326 * 0.55691 * 24 23 22 26 26 C 1.38265 * 120.13596 * 359.72286 * 25 24 23 27 27 C 1.38137 * 120.06699 * 359.97438 * 26 25 24 28 28 C 1.50703 * 120.03562 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47592 * 299.99914 * 1 2 3 31 31 H 1.09004 * 109.47381 * 60.00579 * 1 2 3 32 32 H 1.09005 * 109.47614 * 239.99629 * 2 1 3 33 33 H 1.09011 * 109.46896 * 119.99898 * 2 1 3 34 34 H 1.09010 * 109.46915 * 60.00137 * 10 8 7 35 35 H 1.09001 * 109.47293 * 300.00418 * 10 8 7 36 36 H 1.09002 * 109.47180 * 179.97438 * 10 8 7 37 37 H 0.97005 * 119.99860 * 180.02562 * 14 13 11 38 38 H 1.08005 * 125.97290 * 179.74196 * 19 4 3 39 39 H 1.08010 * 120.03592 * 359.97438 * 23 22 21 40 40 H 1.07996 * 119.96791 * 180.27859 * 24 23 22 41 41 H 1.07996 * 119.93243 * 179.69342 * 25 24 23 42 42 H 1.07998 * 119.96743 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47180 * 264.39451 * 28 27 26 44 44 H 1.09008 * 109.46828 * 24.39584 * 28 27 26 45 45 H 1.08997 * 109.47379 * 144.39340 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2200 2.2222 -1.1095 5 6 1.9676 1.8478 -2.5112 6 8 1.5521 0.7374 -2.7783 7 8 2.1964 2.7369 -3.4977 8 6 1.9260 2.2991 -4.8555 9 1 2.0873 1.2236 -4.9294 10 6 0.4749 2.6231 -5.2164 11 6 2.8516 3.0124 -5.8071 12 1 3.5713 3.7234 -5.4291 13 6 2.7794 2.7574 -7.1602 14 7 1.9026 1.8920 -7.6204 15 14 3.9272 3.6412 -8.3396 16 1 5.1707 2.8472 -8.5084 17 1 3.2583 3.7993 -9.6560 18 1 4.2650 4.9796 -7.7921 19 6 2.7060 3.4669 -0.6475 20 7 2.7910 3.4103 0.6531 21 7 2.3801 2.1428 1.0803 22 6 2.3371 1.7005 2.4095 23 6 2.9982 0.5359 2.7769 24 6 2.9589 0.1057 4.0886 25 6 2.2525 0.8273 5.0336 26 6 1.5884 1.9841 4.6696 27 6 1.6292 2.4229 3.3604 28 6 0.9056 3.6842 2.9646 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 0.3136 3.6986 -5.1424 35 1 -0.1946 2.1072 -4.5280 36 1 0.2720 2.2949 -6.2358 37 1 1.8522 1.7124 -8.5723 38 1 2.9593 4.3172 -1.2634 39 1 3.5461 -0.0307 2.0384 40 1 3.4766 -0.7975 4.3759 41 1 2.2191 0.4863 6.0577 42 1 1.0372 2.5453 5.4096 43 1 -0.0761 3.4297 2.5652 44 1 0.7874 4.3247 3.8387 45 1 1.4821 4.2104 2.2039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770873327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:23 Heat of formation + Delta-G solvation = -7.177712 kcal Electronic energy + Delta-G solvation = -27753.653123 eV Core-core repulsion = 23930.081581 eV Total energy + Delta-G solvation = -3823.571542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.01321 -40.91588 -40.07422 -37.47404 -35.49936 -35.16690 -34.56532 -33.55021 -31.78754 -30.54326 -30.40653 -27.91123 -27.43352 -25.97389 -24.23759 -23.88404 -23.26635 -22.55141 -21.29792 -20.59565 -19.10229 -18.63486 -17.75380 -17.27447 -17.23270 -16.80871 -16.56052 -16.30053 -15.92409 -15.48847 -15.20417 -15.07795 -14.82364 -14.70300 -14.36773 -14.18750 -14.13699 -13.86013 -13.56002 -13.29905 -13.18767 -13.10959 -12.97069 -12.81432 -12.72975 -12.44431 -12.35458 -12.29679 -12.22511 -12.13174 -11.82416 -11.53901 -11.27749 -10.97544 -10.94532 -10.57755 -10.10447 -9.87047 -9.48531 -8.26555 -6.42728 -0.22904 0.26777 0.41281 0.94769 1.09290 1.43069 1.44959 1.56671 2.10375 2.17755 2.44537 2.60951 3.04173 3.28325 3.57957 3.70960 3.72102 3.82174 3.99649 4.08702 4.18304 4.26008 4.32450 4.39818 4.41565 4.47984 4.60920 4.61634 4.64611 4.66466 4.82587 4.84575 4.88138 4.88797 5.01956 5.09407 5.18062 5.21422 5.25855 5.34765 5.39256 5.44761 5.51473 5.66264 5.68924 5.94588 6.04123 6.12006 6.32409 6.62938 7.04798 7.29516 8.81355 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.002704 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.100472 B =10354.100164 C =10680.231819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C 0.177 3.823 4 C -0.296 4.296 5 C 0.529 3.471 6 O -0.549 6.549 7 O -0.358 6.358 8 C 0.221 3.779 9 H 0.009 0.991 10 C -0.141 4.141 11 C -0.547 4.547 12 H 0.067 0.933 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.982 3.018 16 H -0.272 1.272 17 H -0.275 1.275 18 H -0.263 1.263 19 C 0.108 3.892 20 N -0.302 5.302 21 N -0.306 5.306 22 C 0.100 3.900 23 C -0.121 4.121 24 C -0.106 4.106 25 C -0.097 4.097 26 C -0.109 4.109 27 C -0.077 4.077 28 C -0.126 4.126 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.044 0.956 35 H 0.022 0.978 36 H 0.082 0.918 37 H 0.271 0.729 38 H 0.214 0.786 39 H 0.131 0.869 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -2.520 27.791 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 C 0.046 3.954 4 C -0.309 4.309 5 C 0.376 3.624 6 O -0.442 6.442 7 O -0.275 6.275 8 C 0.168 3.832 9 H 0.027 0.973 10 C -0.199 4.199 11 C -0.584 4.584 12 H 0.085 0.915 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.805 3.195 16 H -0.198 1.198 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.080 4.080 20 N -0.118 5.118 21 N -0.078 5.078 22 C 0.012 3.988 23 C -0.141 4.141 24 C -0.125 4.125 25 C -0.115 4.115 26 C -0.127 4.127 27 C -0.079 4.079 28 C -0.183 4.183 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.230 0.770 39 H 0.148 0.852 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.175 0.825 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.914 -2.253 28.663 28.766 hybrid contribution 0.210 -0.071 -2.196 2.207 sum -0.704 -2.324 26.467 26.578 Atomic orbital electron populations 1.21568 0.92467 1.03687 1.01275 1.20596 0.98027 0.86974 1.05143 1.21847 0.92539 0.95692 0.85344 1.19212 1.23114 0.98377 0.90164 1.20335 0.73570 0.82407 0.86080 1.90704 1.45271 1.23150 1.85055 1.86511 1.78241 1.44165 1.18537 1.20324 0.94480 0.94902 0.73471 0.97299 1.21977 0.95778 0.99677 1.02431 1.21302 1.19568 1.25909 0.91642 0.91473 1.25812 0.97387 0.95779 0.99341 1.70017 1.35818 1.34501 1.15137 0.85195 0.78092 0.78892 0.77304 1.19794 1.19976 1.18716 1.24533 0.94250 0.97663 0.91538 1.77230 1.23391 0.98474 1.12739 1.45574 1.48214 1.09602 1.04453 1.17678 1.03485 0.97858 0.79803 1.21336 0.98673 0.95345 0.98726 1.21396 0.99140 1.01126 0.90795 1.21739 0.94737 0.93679 1.01327 1.21350 0.99881 0.97458 0.93996 1.20099 0.96557 0.97372 0.93860 1.20943 0.99487 0.94524 1.03335 0.89208 0.92179 0.94367 0.88961 0.87612 0.93714 0.95857 0.89986 0.92008 0.76955 0.85161 0.82054 0.81764 0.82509 0.91673 0.88949 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.89 71.98 0.71 -2.57 16 2 C -0.07 -1.83 5.51 29.85 0.16 -1.66 16 3 C 0.18 5.57 6.12 42.13 0.26 5.83 16 4 C -0.30 -11.10 6.13 -20.15 -0.12 -11.22 16 5 C 0.53 24.42 7.93 70.19 0.56 24.98 16 6 O -0.55 -27.15 14.13 19.76 0.28 -26.87 16 7 O -0.36 -18.25 9.71 -56.73 -0.55 -18.80 16 8 C 0.22 12.55 2.56 29.85 0.08 12.63 16 9 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 10 C -0.14 -7.49 9.33 71.98 0.67 -6.82 16 11 C -0.55 -31.73 8.90 25.60 0.23 -31.50 16 12 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 13 C 0.02 0.92 5.30 84.66 0.45 1.37 16 14 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 15 Si 0.98 43.58 29.54 68.60 2.03 45.61 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 19 C 0.11 3.57 11.87 85.67 1.02 4.59 16 20 N -0.30 -9.43 10.32 -56.20 -0.58 -10.01 16 21 N -0.31 -8.74 3.22 -174.47 -0.56 -9.30 16 22 C 0.10 2.28 5.90 38.10 0.22 2.51 16 23 C -0.12 -2.13 8.29 22.39 0.19 -1.95 16 24 C -0.11 -1.18 10.04 22.25 0.22 -0.96 16 25 C -0.10 -0.88 10.04 22.29 0.22 -0.66 16 26 C -0.11 -1.33 9.67 22.25 0.22 -1.11 16 27 C -0.08 -1.48 5.90 -19.75 -0.12 -1.59 16 28 C -0.13 -2.45 9.70 71.24 0.69 -1.76 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.18 8.05 -2.38 -0.02 1.16 16 32 H 0.09 2.87 6.76 -2.38 -0.02 2.85 16 33 H 0.11 2.12 5.81 -2.38 -0.01 2.11 16 34 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 4.63 6.07 -2.39 -0.01 4.61 16 37 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 38 H 0.21 6.24 8.06 -2.91 -0.02 6.22 16 39 H 0.13 2.25 7.46 -2.91 -0.02 2.23 16 40 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 42 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.30 8.05 -2.38 -0.02 1.28 16 45 H 0.06 1.61 5.83 -2.39 -0.01 1.60 16 Total: -1.00 -72.22 376.88 7.51 -64.71 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.00 Total: 17.67 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 5.66 Total: -9.90 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -0.90 Total: -72.42 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -0.27 Total: -45.67 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.22 7.51 -64.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770873327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.529 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds