Wall clock time and date at job start Tue Mar 31 2020 15:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 C 1.50707 * 109.47055 * 120.00049 * 2 1 3 5 5 C 1.35347 * 126.37373 * 325.28604 * 4 2 1 6 6 C 1.41553 * 105.49846 * 180.17392 * 5 4 2 7 7 C 1.47582 * 126.52450 * 179.83776 * 6 5 4 8 8 O 1.21491 * 119.99753 * 359.71915 * 7 6 5 9 9 O 1.34726 * 119.99938 * 179.71409 * 7 6 5 10 10 C 1.45203 * 117.00112 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47319 * 179.97438 * 10 9 7 12 12 C 1.38633 * 119.74949 * 269.72858 * 11 10 9 13 13 C 1.37617 * 120.24944 * 179.72576 * 12 11 10 14 14 C 1.40718 * 119.74164 * 0.56005 * 13 12 11 15 15 C 1.41401 * 120.24393 * 179.68489 * 14 13 12 16 16 H 1.07999 * 119.99852 * 204.41479 * 15 14 13 17 17 C 1.39940 * 119.99711 * 24.41047 * 15 14 13 18 18 N 1.30825 * 120.00049 * 17.84943 * 17 15 14 19 19 Si 1.86804 * 119.99952 * 197.84493 * 17 15 14 20 20 H 1.48502 * 109.46772 * 60.00290 * 19 17 15 21 21 H 1.48499 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46944 * 300.00457 * 19 17 15 23 23 C 1.40710 * 119.51303 * 359.71722 * 14 13 12 24 24 C 1.37618 * 119.74430 * 359.97438 * 23 14 13 25 25 N 1.31854 * 106.94996 * 359.58379 * 6 5 4 26 26 N 1.28460 * 110.06397 * 0.25695 * 25 6 5 27 27 C 1.46509 * 124.88195 * 179.97438 * 26 25 6 28 28 H 1.09005 * 109.47311 * 300.00348 * 1 2 3 29 29 H 1.09001 * 109.47163 * 60.00332 * 1 2 3 30 30 H 1.08999 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47349 * 239.99612 * 2 1 3 32 32 H 1.09002 * 109.47207 * 299.99656 * 3 2 1 33 33 H 1.08995 * 109.47242 * 59.99547 * 3 2 1 34 34 H 1.09005 * 109.47380 * 179.97438 * 3 2 1 35 35 H 1.08003 * 127.25339 * 0.02562 * 5 4 2 36 36 H 1.09005 * 109.47424 * 59.99535 * 10 9 7 37 37 H 1.09004 * 109.46948 * 300.00024 * 10 9 7 38 38 H 1.08007 * 119.87369 * 359.96917 * 12 11 10 39 39 H 1.07997 * 120.13095 * 180.27639 * 13 12 11 40 40 H 0.97006 * 119.99615 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.13315 * 179.97438 * 23 14 13 42 42 H 1.08005 * 119.87795 * 180.02562 * 24 23 14 43 43 H 1.09003 * 109.46837 * 90.02882 * 27 26 25 44 44 H 1.08997 * 109.47268 * 210.02723 * 27 26 25 45 45 H 1.09003 * 109.46724 * 330.03390 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4553 -0.7007 2.4548 6 6 2.2892 -1.5005 3.2724 7 6 2.0901 -1.7994 4.7039 8 8 1.1344 -1.3363 5.2938 9 8 2.9681 -2.5859 5.3563 10 6 2.7091 -2.8377 6.7627 11 6 3.7874 -3.7306 7.3201 12 6 3.6264 -5.1072 7.2863 13 6 4.6071 -5.9324 7.7873 14 6 5.7714 -5.3736 8.3461 15 6 6.7828 -6.2114 8.8700 16 1 7.4584 -5.8356 9.6241 17 6 6.9082 -7.5276 8.4114 18 7 6.3495 -7.8832 7.2832 19 14 7.8735 -8.7767 9.4102 20 1 7.2547 -8.9219 10.7523 21 1 7.8570 -10.0875 8.7126 22 1 9.2765 -8.3135 9.5594 23 6 5.9215 -3.9750 8.3803 24 6 4.9306 -3.1692 7.8677 25 7 3.2749 -1.9322 2.5103 26 7 3.1389 -1.4797 1.3157 27 6 4.0534 -1.7577 0.2054 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 0.5505 -0.1884 2.7471 36 1 1.7407 -3.3262 6.8720 37 1 2.7026 -1.8926 7.3058 38 1 2.7295 -5.5336 6.8615 39 1 4.4816 -7.0046 7.7559 40 1 6.4368 -8.7955 6.9652 41 1 6.8108 -3.5354 8.8073 42 1 5.0437 -2.0954 7.8924 43 1 3.7245 -2.6540 -0.3205 44 1 4.0562 -0.9128 -0.4833 45 1 5.0599 -1.9132 0.5939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776112278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:53 Heat of formation + Delta-G solvation = -1.774874 kcal Electronic energy + Delta-G solvation = -26428.977309 eV Core-core repulsion = 22605.640052 eV Total energy + Delta-G solvation = -3823.337257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.86586 -39.70281 -37.59503 -36.13423 -35.89909 -33.82349 -33.64817 -30.76766 -29.85298 -29.30763 -28.08052 -27.57644 -26.94070 -24.31656 -23.23677 -22.74329 -21.02448 -20.59240 -19.99644 -19.60467 -17.45971 -17.33836 -16.87727 -16.55023 -16.00203 -15.68172 -15.27527 -14.92628 -14.43975 -14.12287 -14.08442 -13.75158 -13.69744 -13.44764 -13.00543 -12.93502 -12.70618 -12.55504 -12.28093 -12.22449 -12.01361 -11.96068 -11.68467 -11.62818 -11.30205 -11.13318 -10.95975 -10.83854 -10.77954 -10.44084 -10.33298 -10.04910 -9.64939 -9.41207 -9.24656 -9.17065 -9.08297 -7.50044 -7.39056 -6.81547 -4.41348 1.47999 1.92059 2.22573 2.55997 3.01230 3.04052 3.07054 3.08809 3.37086 3.45615 3.89072 4.09616 4.20233 4.45033 4.58060 4.66926 4.79566 4.89639 4.93756 5.10443 5.21159 5.26804 5.32979 5.44189 5.46828 5.58626 5.65192 5.68538 5.75213 5.78997 5.81681 5.94005 6.11138 6.29076 6.32477 6.38071 6.59234 6.87797 6.93249 7.02324 7.24591 7.32639 7.57578 7.76226 7.81164 8.00838 8.07732 8.22529 8.24841 8.59163 8.83649 8.92550 10.12171 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002217 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.551564 B =12627.012685 C =13364.594909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.012 3.988 5 C -0.171 4.171 6 C 0.000 4.000 7 C 0.548 3.452 8 O -0.513 6.513 9 O -0.334 6.334 10 C 0.135 3.865 11 C -0.233 4.233 12 C -0.074 4.074 13 C -0.171 4.171 14 C 0.118 3.882 15 C -0.457 4.457 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.786 5.786 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.230 4.230 24 C -0.063 4.063 25 N -0.227 5.227 26 N -0.280 5.280 27 C 0.083 3.917 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.163 0.837 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 12.319 -17.019 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.199 4.199 6 C -0.158 4.158 7 C 0.391 3.609 8 O -0.401 6.401 9 O -0.249 6.249 10 C 0.063 3.937 11 C -0.234 4.234 12 C -0.093 4.093 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.250 4.250 24 C -0.081 4.081 25 N -0.063 5.063 26 N -0.069 5.069 27 C -0.057 4.057 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.180 0.820 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.726 11.527 -17.014 21.624 hybrid contribution -0.183 -0.219 0.344 0.447 sum -6.909 11.308 -16.671 21.296 Atomic orbital electron populations 1.21830 0.92978 1.02680 1.02639 1.19666 0.96841 0.95398 0.92398 1.21866 1.01113 0.94570 1.02742 1.21367 0.91061 1.00609 0.98107 1.21410 1.02775 1.04680 0.90986 1.20917 0.96731 1.05169 0.92992 1.19652 0.80268 0.75952 0.85066 1.90804 1.30582 1.51000 1.67746 1.86873 1.49490 1.61082 1.27424 1.21795 0.97898 0.98319 0.75709 1.18674 0.98661 0.92999 1.13072 1.20546 0.97803 0.92480 0.98483 1.21287 0.93425 0.99282 1.05006 1.17678 0.91469 0.91173 0.88109 1.19631 1.13451 0.95493 1.20021 0.90239 1.25970 0.95040 0.99359 0.94043 1.69834 1.35235 1.19852 1.16088 0.86333 0.80490 0.78963 0.80763 1.18713 1.20277 1.18928 1.20953 0.99335 0.93908 1.10776 1.20397 0.93164 0.97141 0.97431 1.73859 1.22812 1.18705 0.90925 1.45476 1.19265 1.34164 1.07960 1.22201 0.94047 1.03284 0.86162 0.91681 0.91750 0.92086 0.90081 0.91663 0.91750 0.92662 0.81994 0.91877 0.91933 0.89302 0.86248 0.90634 0.88745 0.89282 0.89501 0.88737 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.78 37.15 0.33 -0.53 16 2 C -0.02 -0.15 2.89 -91.77 -0.27 -0.42 16 3 C -0.15 -0.83 9.18 37.16 0.34 -0.48 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.26 9.95 -39.35 -0.39 -2.65 16 6 C 0.00 -0.01 7.17 -82.78 -0.59 -0.60 16 7 C 0.55 10.56 7.97 34.54 0.28 10.84 16 8 O -0.51 -10.27 16.72 -19.26 -0.32 -10.59 16 9 O -0.33 -7.08 10.21 -40.56 -0.41 -7.49 16 10 C 0.13 2.77 5.59 36.00 0.20 2.97 16 11 C -0.23 -5.42 5.54 -104.33 -0.58 -6.00 16 12 C -0.07 -1.82 9.67 -39.66 -0.38 -2.20 16 13 C -0.17 -4.52 8.70 -38.87 -0.34 -4.86 16 14 C 0.12 3.20 5.57 -106.82 -0.60 2.60 16 15 C -0.46 -12.12 9.05 -37.74 -0.34 -12.46 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.79 -20.34 10.95 55.55 0.61 -19.73 16 19 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 23 C -0.23 -5.78 9.80 -38.88 -0.38 -6.16 16 24 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 25 N -0.23 -3.70 11.99 33.41 0.40 -3.30 16 26 N -0.28 -3.31 3.70 -63.84 -0.24 -3.54 16 27 C 0.08 0.57 10.89 59.85 0.65 1.22 16 28 H 0.06 0.41 7.35 -51.93 -0.38 0.03 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.40 7.42 -51.93 -0.39 0.01 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.16 1.88 7.46 -52.48 -0.39 1.49 16 36 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 38 H 0.09 1.98 8.06 -52.48 -0.42 1.56 16 39 H 0.12 3.23 6.16 -52.49 -0.32 2.90 16 40 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 41 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.35 7.44 -51.93 -0.39 -0.03 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -32.15 385.23 -8.70 -40.85 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.48 Total: 3.66 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.03 Total: -19.15 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.74 Total: -18.08 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.15 -8.70 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.079 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds