Wall clock time and date at job start Tue Mar 31 2020 16:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47270 * 2 1 4 4 C 1.52994 * 109.46806 * 120.00044 * 2 1 3 5 5 N 1.46501 * 109.47469 * 64.99897 * 4 2 1 6 6 C 1.34233 * 125.73984 * 124.99500 * 5 4 2 7 7 C 1.38128 * 107.40223 * 180.02562 * 6 5 4 8 8 C 1.47287 * 126.42511 * 179.97438 * 7 6 5 9 9 O 1.21526 * 119.99809 * 0.02562 * 8 7 6 10 10 O 1.34753 * 120.00095 * 180.02562 * 8 7 6 11 11 C 1.45202 * 116.99967 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47010 * 180.02562 * 11 10 8 13 13 C 1.38634 * 119.74914 * 269.72756 * 12 11 10 14 14 C 1.37619 * 120.24942 * 179.72155 * 13 12 11 15 15 C 1.40717 * 119.73953 * 0.57349 * 14 13 12 16 16 C 1.41400 * 120.23665 * 179.68462 * 15 14 13 17 17 H 1.08007 * 119.99684 * 155.31480 * 16 15 14 18 18 C 1.39939 * 120.00333 * 335.30310 * 16 15 14 19 19 N 1.30826 * 120.00025 * 342.23859 * 18 16 15 20 20 Si 1.86800 * 120.00117 * 162.23840 * 18 16 15 21 21 H 1.48494 * 109.47119 * 94.66408 * 20 18 16 22 22 H 1.48501 * 109.47377 * 214.66748 * 20 18 16 23 23 H 1.48501 * 109.47174 * 334.66670 * 20 18 16 24 24 C 1.40711 * 119.51509 * 359.69926 * 15 14 13 25 25 C 1.37617 * 119.74404 * 0.02562 * 24 15 14 26 26 C 1.41337 * 107.14822 * 0.26999 * 7 6 5 27 27 N 1.30433 * 108.01481 * 359.54932 * 26 7 6 28 28 H 1.08996 * 109.46944 * 300.00228 * 1 2 3 29 29 H 1.08998 * 109.46483 * 60.00369 * 1 2 3 30 30 H 1.09004 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46944 * 239.99772 * 2 1 3 32 32 H 1.09001 * 109.47065 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46919 * 299.99994 * 3 2 1 34 34 H 1.08996 * 109.46908 * 59.99663 * 3 2 1 35 35 H 1.09000 * 109.47163 * 304.99645 * 4 2 1 36 36 H 1.09008 * 109.47243 * 185.00317 * 4 2 1 37 37 H 1.07995 * 126.29711 * 0.06607 * 6 5 4 38 38 H 1.08994 * 109.46999 * 300.00630 * 11 10 8 39 39 H 1.08996 * 109.46818 * 60.00365 * 11 10 8 40 40 H 1.08008 * 119.87481 * 359.97438 * 13 12 11 41 41 H 1.07995 * 120.12746 * 180.27730 * 14 13 12 42 42 H 0.97003 * 119.99697 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.12552 * 179.97438 * 24 15 14 44 44 H 1.07995 * 119.87428 * 179.97438 * 25 24 15 45 45 H 1.08004 * 125.99614 * 179.73937 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 2.4870 -3.1797 1.2871 7 6 1.7245 -4.3268 1.1831 8 6 2.2191 -5.7133 1.2340 9 8 3.4058 -5.9300 1.3808 10 8 1.3557 -6.7413 1.1177 11 6 1.9135 -8.0806 1.1775 12 6 0.8068 -9.0927 1.0302 13 6 0.1550 -9.5683 2.1575 14 6 -0.8610 -10.4884 2.0345 15 6 -1.2292 -10.9553 0.7591 16 6 -2.2671 -11.9057 0.6211 17 1 -2.8181 -11.9728 -0.3055 18 6 -2.5803 -12.7593 1.6848 19 7 -1.7240 -12.9324 2.6586 20 14 -4.2211 -13.6516 1.7144 21 1 -4.0581 -15.0070 1.1300 22 1 -4.6946 -13.7709 3.1168 23 1 -5.2152 -12.8864 0.9197 24 6 -0.5569 -10.4699 -0.3776 25 6 0.4522 -9.5457 -0.2312 26 6 0.3817 -3.9206 1.0117 27 7 0.3501 -2.6167 1.0238 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2617 2.1369 36 1 3.1264 -0.6443 1.2952 37 1 3.5575 -3.1336 1.4221 38 1 2.6340 -8.2104 0.3701 39 1 2.4122 -8.2239 2.1360 40 1 0.4429 -9.2123 3.1357 41 1 -1.3704 -10.8542 2.9137 42 1 -1.9413 -13.5239 3.3961 43 1 -0.8312 -10.8218 -1.3611 44 1 0.9700 -9.1720 -1.1022 45 1 -0.4694 -4.5750 0.8946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781822305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:34 Heat of formation + Delta-G solvation = -4.012482 kcal Electronic energy + Delta-G solvation = -26043.789195 eV Core-core repulsion = 22220.354907 eV Total energy + Delta-G solvation = -3823.434287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.58155 -39.58547 -37.61083 -36.82053 -35.83338 -33.82460 -32.51381 -30.92067 -30.37591 -29.32826 -27.54932 -27.43237 -26.69213 -24.12203 -22.84628 -21.63892 -21.04521 -20.55820 -20.14877 -19.96829 -18.01908 -17.35698 -16.58362 -16.05626 -15.88791 -15.67957 -15.39109 -15.20822 -14.50815 -14.27691 -13.90139 -13.79337 -13.58825 -13.35051 -13.01522 -12.79380 -12.73262 -12.49302 -12.44222 -12.22476 -11.99111 -11.89651 -11.51845 -11.37126 -11.26500 -11.21747 -11.09516 -10.83019 -10.57863 -10.55067 -10.08096 -10.05461 -9.72567 -9.65100 -9.43275 -9.18162 -8.88374 -7.52187 -7.41682 -6.84040 -4.42921 1.30013 2.02250 2.05937 2.53749 3.00040 3.03648 3.05526 3.10531 3.37027 3.50175 3.88265 4.05012 4.22779 4.44256 4.55531 4.58130 4.75094 4.85867 4.93414 5.07362 5.12917 5.27744 5.29931 5.44848 5.55137 5.61106 5.66627 5.69304 5.75198 5.80315 5.82862 6.08869 6.17693 6.30364 6.36148 6.41956 6.59342 6.90105 6.96147 7.00925 7.22281 7.30265 7.37301 7.55553 7.78154 7.99379 8.05273 8.22846 8.23099 8.57396 8.82065 8.90425 10.10189 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.001984 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.951172 B =14106.964740 C =14810.744390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.132 3.868 5 N -0.359 5.359 6 C 0.129 3.871 7 C -0.275 4.275 8 C 0.537 3.463 9 O -0.534 6.534 10 O -0.345 6.345 11 C 0.138 3.862 12 C -0.233 4.233 13 C -0.075 4.075 14 C -0.170 4.170 15 C 0.118 3.882 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.787 5.787 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.230 4.230 25 C -0.064 4.064 26 C 0.104 3.896 27 N -0.296 5.296 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.188 0.812 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.282 0.718 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 22.506 -1.452 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.012 3.988 5 N -0.137 5.137 6 C -0.022 4.022 7 C -0.288 4.288 8 C 0.383 3.617 9 O -0.425 6.425 10 O -0.262 6.262 11 C 0.066 3.934 12 C -0.235 4.235 13 C -0.094 4.094 14 C -0.190 4.190 15 C 0.116 3.884 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.412 5.412 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.250 4.250 25 C -0.082 4.082 26 C -0.083 4.083 27 N -0.116 5.116 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.205 0.795 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.717 23.445 -1.255 24.164 hybrid contribution 0.064 -1.304 0.195 1.320 sum 5.782 22.141 -1.060 22.908 Atomic orbital electron populations 1.22105 0.93511 1.04915 1.01214 1.21400 0.98083 0.96191 0.96991 1.21797 1.00978 0.94927 1.02662 1.22031 1.00782 0.75636 1.00367 1.48578 1.05080 1.06352 1.53682 1.22933 0.97547 0.86119 0.95621 1.19488 0.94255 0.91150 1.23862 1.20019 0.84051 0.85211 0.72467 1.90787 1.17570 1.86361 1.47828 1.86738 1.40781 1.16364 1.82287 1.21695 0.94728 0.76079 1.00876 1.18672 1.05850 1.04784 0.94165 1.20545 0.96098 0.97043 0.95674 1.21290 0.99920 0.99422 0.98327 1.17688 0.89968 0.89595 0.91185 1.19661 1.14858 1.14415 0.99646 0.90210 1.25962 0.97814 0.96092 0.94458 1.69829 1.33457 1.29211 1.08658 0.86290 0.82084 0.79732 0.78615 1.19501 1.19952 1.18315 1.20947 1.01051 1.05227 0.97741 1.20390 0.96564 0.96534 0.94716 1.24376 0.97269 0.91950 0.94751 1.77106 0.97955 1.11506 1.24999 0.92896 0.93050 0.89113 0.90584 0.92418 0.91805 0.92213 0.89155 0.88280 0.79473 0.92120 0.92032 0.89294 0.86315 0.90690 0.88751 0.89279 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.91 37.16 0.33 -0.91 16 2 C -0.11 -0.67 3.12 -90.62 -0.28 -0.95 16 3 C -0.15 -0.62 9.19 37.16 0.34 -0.28 16 4 C 0.13 0.81 5.94 -4.04 -0.02 0.78 16 5 N -0.36 -3.51 3.65 -60.79 -0.22 -3.73 16 6 C 0.13 1.38 11.25 -16.54 -0.19 1.19 16 7 C -0.27 -3.78 6.13 -105.08 -0.64 -4.42 16 8 C 0.54 9.10 7.95 34.41 0.27 9.37 16 9 O -0.53 -9.94 16.69 -19.29 -0.32 -10.27 16 10 O -0.35 -6.44 10.05 -40.63 -0.41 -6.85 16 11 C 0.14 2.68 5.59 36.01 0.20 2.88 16 12 C -0.23 -5.19 5.54 -104.33 -0.58 -5.77 16 13 C -0.07 -1.76 9.67 -39.66 -0.38 -2.14 16 14 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 15 C 0.12 3.12 5.57 -106.82 -0.60 2.52 16 16 C -0.46 -11.90 9.05 -37.74 -0.34 -12.24 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.79 -19.96 10.97 55.55 0.61 -19.35 16 20 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.23 -5.60 9.80 -38.88 -0.38 -5.98 16 25 C -0.06 -1.43 9.67 -39.66 -0.38 -1.82 16 26 C 0.10 1.33 11.87 -16.97 -0.20 1.13 16 27 N -0.30 -3.54 9.52 30.87 0.29 -3.25 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.91 5.34 -51.93 -0.28 0.63 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.35 8.06 -51.92 -0.42 -0.07 16 37 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.06 1.12 8.07 -51.93 -0.42 0.71 16 39 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 40 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 41 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 42 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 43 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 44 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 45 H 0.20 2.34 8.06 -52.48 -0.42 1.91 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -30.07 384.10 -9.05 -39.12 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.48 Total: 4.90 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -3.28 Total: -19.57 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.68 Total: -26.33 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.73 Total: -17.12 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.07 -9.05 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781822305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.107 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds