Wall clock time and date at job start Tue Mar 31 2020 16:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47270 * 2 1 4 4 C 1.52994 * 109.46806 * 120.00044 * 2 1 3 5 5 N 1.46501 * 109.47469 * 64.99897 * 4 2 1 6 6 C 1.34233 * 125.73984 * 124.99500 * 5 4 2 7 7 C 1.38128 * 107.40223 * 180.02562 * 6 5 4 8 8 C 1.47287 * 126.42511 * 179.97438 * 7 6 5 9 9 O 1.21526 * 119.99809 * 0.02562 * 8 7 6 10 10 O 1.34753 * 120.00095 * 180.02562 * 8 7 6 11 11 C 1.45202 * 116.99967 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47010 * 180.02562 * 11 10 8 13 13 C 1.38634 * 119.74914 * 269.72756 * 12 11 10 14 14 C 1.37619 * 120.24942 * 179.72155 * 13 12 11 15 15 C 1.40717 * 119.73953 * 0.57349 * 14 13 12 16 16 C 1.41400 * 120.23665 * 179.68462 * 15 14 13 17 17 H 1.08007 * 119.99684 * 155.31480 * 16 15 14 18 18 C 1.39939 * 120.00333 * 335.30310 * 16 15 14 19 19 N 1.30826 * 120.00025 * 342.23859 * 18 16 15 20 20 Si 1.86800 * 120.00117 * 162.23840 * 18 16 15 21 21 H 1.48494 * 109.47119 * 94.66408 * 20 18 16 22 22 H 1.48501 * 109.47377 * 214.66748 * 20 18 16 23 23 H 1.48501 * 109.47174 * 334.66670 * 20 18 16 24 24 C 1.40711 * 119.51509 * 359.69926 * 15 14 13 25 25 C 1.37617 * 119.74404 * 0.02562 * 24 15 14 26 26 C 1.41337 * 107.14822 * 0.26999 * 7 6 5 27 27 N 1.30433 * 108.01481 * 359.54932 * 26 7 6 28 28 H 1.08996 * 109.46944 * 300.00228 * 1 2 3 29 29 H 1.08998 * 109.46483 * 60.00369 * 1 2 3 30 30 H 1.09004 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46944 * 239.99772 * 2 1 3 32 32 H 1.09001 * 109.47065 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46919 * 299.99994 * 3 2 1 34 34 H 1.08996 * 109.46908 * 59.99663 * 3 2 1 35 35 H 1.09000 * 109.47163 * 304.99645 * 4 2 1 36 36 H 1.09008 * 109.47243 * 185.00317 * 4 2 1 37 37 H 1.07995 * 126.29711 * 0.06607 * 6 5 4 38 38 H 1.08994 * 109.46999 * 300.00630 * 11 10 8 39 39 H 1.08996 * 109.46818 * 60.00365 * 11 10 8 40 40 H 1.08008 * 119.87481 * 359.97438 * 13 12 11 41 41 H 1.07995 * 120.12746 * 180.27730 * 14 13 12 42 42 H 0.97003 * 119.99697 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.12552 * 179.97438 * 24 15 14 44 44 H 1.07995 * 119.87428 * 179.97438 * 25 24 15 45 45 H 1.08004 * 125.99614 * 179.73937 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 2.4870 -3.1797 1.2871 7 6 1.7245 -4.3268 1.1831 8 6 2.2191 -5.7133 1.2340 9 8 3.4058 -5.9300 1.3808 10 8 1.3557 -6.7413 1.1177 11 6 1.9135 -8.0806 1.1775 12 6 0.8068 -9.0927 1.0302 13 6 0.1550 -9.5683 2.1575 14 6 -0.8610 -10.4884 2.0345 15 6 -1.2292 -10.9553 0.7591 16 6 -2.2671 -11.9057 0.6211 17 1 -2.8181 -11.9728 -0.3055 18 6 -2.5803 -12.7593 1.6848 19 7 -1.7240 -12.9324 2.6586 20 14 -4.2211 -13.6516 1.7144 21 1 -4.0581 -15.0070 1.1300 22 1 -4.6946 -13.7709 3.1168 23 1 -5.2152 -12.8864 0.9197 24 6 -0.5569 -10.4699 -0.3776 25 6 0.4522 -9.5457 -0.2312 26 6 0.3817 -3.9206 1.0117 27 7 0.3501 -2.6167 1.0238 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2617 2.1369 36 1 3.1264 -0.6443 1.2952 37 1 3.5575 -3.1336 1.4221 38 1 2.6340 -8.2104 0.3701 39 1 2.4122 -8.2239 2.1360 40 1 0.4429 -9.2123 3.1357 41 1 -1.3704 -10.8542 2.9137 42 1 -1.9413 -13.5239 3.3961 43 1 -0.8312 -10.8218 -1.3611 44 1 0.9700 -9.1720 -1.1022 45 1 -0.4694 -4.5750 0.8946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781822305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:33 Heat of formation + Delta-G solvation = -17.423765 kcal Electronic energy + Delta-G solvation = -26044.370751 eV Core-core repulsion = 22220.354907 eV Total energy + Delta-G solvation = -3824.015844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.48823 -40.95278 -39.41655 -37.44512 -37.23803 -35.65372 -33.30515 -32.57613 -31.47733 -31.20082 -29.00411 -28.00543 -27.59354 -25.70590 -24.10209 -22.93008 -22.42619 -21.81249 -21.32451 -21.07067 -19.25460 -19.01728 -17.92030 -17.39881 -17.13889 -16.88546 -16.43900 -16.04903 -15.86924 -15.54461 -15.40483 -15.21877 -14.47383 -14.41667 -14.16234 -13.92089 -13.85985 -13.76358 -13.74358 -13.27372 -13.17807 -13.02749 -12.94337 -12.76854 -12.64684 -12.38477 -12.20255 -11.88384 -11.80083 -11.70518 -11.61339 -11.46407 -11.27065 -11.20061 -11.01420 -10.55452 -9.83012 -9.41657 -9.31732 -8.67860 -6.37918 0.34162 0.74849 1.02370 1.13060 1.30326 1.39370 1.46925 1.54905 2.08475 2.19945 2.20654 2.74649 3.41392 3.70266 3.74329 3.76890 3.93317 4.00878 4.14142 4.15515 4.15958 4.25436 4.45578 4.47042 4.51039 4.57919 4.58283 4.68913 4.75703 4.81502 5.02016 5.02338 5.04859 5.13486 5.19706 5.31303 5.32419 5.38448 5.41215 5.56412 5.61606 5.67092 5.86176 5.90733 6.07256 6.16896 6.33680 6.46237 6.65907 6.89038 6.90147 6.98969 8.29302 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.001984 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.951172 B =14106.964740 C =14810.744390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.122 3.878 5 N -0.348 5.348 6 C 0.151 3.849 7 C -0.307 4.307 8 C 0.539 3.461 9 O -0.554 6.554 10 O -0.356 6.356 11 C 0.144 3.856 12 C -0.227 4.227 13 C -0.080 4.080 14 C -0.193 4.193 15 C 0.087 3.913 16 C -0.494 4.494 17 H 0.079 0.921 18 C 0.035 3.965 19 N -0.819 5.819 20 Si 0.984 3.016 21 H -0.261 1.261 22 H -0.266 1.266 23 H -0.258 1.258 24 C -0.244 4.244 25 C -0.065 4.065 26 C 0.095 3.905 27 N -0.306 5.306 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.220 0.780 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.290 0.710 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 24.645 -1.443 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.123 4.123 3 C -0.198 4.198 4 C 0.003 3.997 5 N -0.125 5.125 6 C -0.002 4.002 7 C -0.320 4.320 8 C 0.387 3.613 9 O -0.448 6.448 10 O -0.273 6.273 11 C 0.071 3.929 12 C -0.229 4.229 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.084 3.916 16 C -0.522 4.522 17 H 0.097 0.903 18 C -0.181 4.181 19 N -0.445 5.445 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.182 1.182 24 C -0.264 4.264 25 C -0.083 4.083 26 C -0.092 4.092 27 N -0.126 5.126 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.153 0.847 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.136 0.864 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.733 25.626 -1.253 26.526 hybrid contribution -0.131 -1.735 0.171 1.748 sum 6.603 23.892 -1.082 24.811 Atomic orbital electron populations 1.22086 0.94992 1.03316 1.01445 1.21359 0.96760 0.97510 0.96636 1.21756 1.01888 0.93246 1.02934 1.22488 1.03109 0.73399 1.00667 1.48941 1.04191 1.07644 1.51768 1.23354 0.98651 0.85152 0.93085 1.19436 0.95183 0.90246 1.27163 1.20415 0.83598 0.85702 0.71630 1.90767 1.18184 1.86619 1.49182 1.86697 1.41395 1.16330 1.82833 1.21514 0.93535 0.76140 1.01664 1.18979 1.05505 1.04723 0.93654 1.20775 0.95527 0.96415 0.97110 1.21260 1.01318 1.00853 0.97822 1.18051 0.90928 0.90513 0.92064 1.19912 1.15958 1.15688 1.00673 0.90255 1.26819 1.01196 0.96463 0.93598 1.69875 1.35222 1.30008 1.09357 0.85172 0.77064 0.78448 0.78928 1.18602 1.18990 1.18184 1.21159 1.01660 1.05890 0.97679 1.20705 0.95958 0.95699 0.95960 1.24435 0.97244 0.92433 0.95088 1.77136 0.99457 1.10963 1.25051 0.92601 0.92961 0.91507 0.91626 0.90915 0.92024 0.91514 0.88023 0.84728 0.76372 0.90993 0.91510 0.87611 0.87847 0.89904 0.87924 0.86435 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.91 71.98 0.64 -1.66 16 2 C -0.10 -1.04 3.12 -10.79 -0.03 -1.07 16 3 C -0.14 -0.78 9.19 71.98 0.66 -0.11 16 4 C 0.12 1.08 5.94 86.38 0.51 1.59 16 5 N -0.35 -5.97 3.65 -346.25 -1.26 -7.23 16 6 C 0.15 2.82 11.25 84.30 0.95 3.77 16 7 C -0.31 -8.09 6.13 -20.16 -0.12 -8.22 16 8 C 0.54 17.76 7.95 70.20 0.56 18.32 16 9 O -0.55 -19.92 16.69 19.75 0.33 -19.59 16 10 O -0.36 -13.06 10.05 -56.63 -0.57 -13.63 16 11 C 0.14 5.44 5.59 71.24 0.40 5.84 16 12 C -0.23 -10.03 5.54 -19.68 -0.11 -10.14 16 13 C -0.08 -3.79 9.67 22.22 0.21 -3.58 16 14 C -0.19 -10.30 8.70 22.73 0.20 -10.10 16 15 C 0.09 4.74 5.57 -21.29 -0.12 4.62 16 16 C -0.49 -26.58 9.05 23.46 0.21 -26.37 16 17 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 18 C 0.04 1.76 5.14 85.25 0.44 2.20 16 19 N -0.82 -42.67 10.97 21.82 0.24 -42.43 16 20 Si 0.98 37.80 29.59 68.60 2.03 39.83 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 C -0.24 -12.11 9.80 22.73 0.22 -11.89 16 25 C -0.07 -2.90 9.67 22.22 0.21 -2.69 16 26 C 0.10 2.41 11.87 85.66 1.02 3.43 16 27 N -0.31 -7.03 9.52 -56.25 -0.54 -7.57 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.31 5.34 -2.39 -0.01 1.29 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.13 0.30 8.06 -2.38 -0.02 0.28 16 37 H 0.22 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 39 H 0.07 2.44 8.07 -2.39 -0.02 2.43 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.10 5.73 6.18 -2.91 -0.02 5.71 16 42 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 43 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 44 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 45 H 0.20 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -66.76 384.10 7.07 -59.69 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.99 Total: 26.99 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 5.85 Total: -36.06 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -1.56 Total: -57.23 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.24 Total: -33.22 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -66.76 7.07 -59.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781822305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.264 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds