Wall clock time and date at job start Tue Mar 31 2020 15:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 C 1.50699 * 109.47228 * 184.95986 * 3 2 1 5 5 C 1.38153 * 126.30750 * 85.19659 * 4 3 2 6 6 C 1.47263 * 126.42703 * 0.02562 * 5 4 3 7 7 O 1.21528 * 119.99766 * 0.02562 * 6 5 4 8 8 O 1.34755 * 120.00298 * 180.02562 * 6 5 4 9 9 C 1.45203 * 117.00038 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46893 * 30.00153 * 9 8 6 11 11 C 1.52998 * 109.47328 * 270.00326 * 9 8 6 12 12 C 1.50697 * 109.46816 * 150.00172 * 9 8 6 13 13 H 1.08000 * 120.00259 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99797 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00207 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99950 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.46849 * 90.00282 * 16 14 12 18 18 H 1.48499 * 109.47396 * 210.00250 * 16 14 12 19 19 H 1.48495 * 109.47227 * 330.00366 * 16 14 12 20 20 C 1.41389 * 107.15120 * 180.28528 * 5 4 3 21 21 N 1.30456 * 108.05698 * 359.54844 * 20 5 4 22 22 N 1.34499 * 126.31719 * 265.21726 * 4 3 2 23 23 C 1.40145 * 125.76571 * 359.94564 * 22 4 3 24 24 C 1.38852 * 120.06333 * 315.39311 * 23 22 4 25 25 C 1.38117 * 119.92934 * 179.69951 * 24 23 22 26 26 C 1.38287 * 120.06886 * 0.56733 * 25 24 23 27 27 C 1.38288 * 120.13209 * 359.72787 * 26 25 24 28 28 C 1.38117 * 120.06729 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47530 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47453 * 299.99850 * 1 2 3 31 31 H 1.09003 * 109.47448 * 59.99988 * 1 2 3 32 32 H 1.08997 * 109.47178 * 239.99824 * 2 1 3 33 33 H 1.09000 * 109.46811 * 119.99639 * 2 1 3 34 34 H 1.09003 * 109.47188 * 64.96213 * 3 2 1 35 35 H 1.09000 * 109.47296 * 304.96408 * 3 2 1 36 36 H 1.09000 * 109.47293 * 59.99763 * 11 9 8 37 37 H 1.09003 * 109.47417 * 300.00380 * 11 9 8 38 38 H 1.08999 * 109.47525 * 179.97438 * 11 9 8 39 39 H 0.96996 * 120.00029 * 179.97438 * 15 14 12 40 40 H 1.07994 * 125.96536 * 179.73987 * 20 5 4 41 41 H 1.08003 * 120.03414 * 359.97438 * 24 23 22 42 42 H 1.07997 * 119.97080 * 180.30030 * 25 24 23 43 43 H 1.07993 * 119.93421 * 179.75035 * 26 25 24 44 44 H 1.07999 * 119.96368 * 180.02562 * 27 26 25 45 45 H 1.07994 * 120.02912 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5419 1.4443 -0.1228 5 6 4.2667 1.3840 -1.2974 6 6 3.7167 1.3067 -2.6613 7 8 2.5135 1.2915 -2.8313 8 8 4.5476 1.2528 -3.7209 9 6 3.9355 1.1773 -5.0354 10 1 2.9726 1.6879 -5.0177 11 6 3.7279 -0.2895 -5.4179 12 6 4.8358 1.8378 -6.0474 13 1 5.7744 2.2706 -5.7340 14 6 4.4619 1.8886 -7.3735 15 7 3.3192 1.3611 -7.7552 16 14 5.5782 2.7067 -8.6280 17 1 6.5150 1.6997 -9.1882 18 1 4.7555 3.2805 -9.7231 19 1 6.3517 3.7903 -7.9702 20 6 5.6356 1.4044 -0.9442 21 7 5.7168 1.4821 0.3555 22 7 4.4240 1.5044 0.8907 23 6 4.1027 1.5778 2.2529 24 6 3.1064 2.4420 2.6870 25 6 2.7877 2.5076 4.0293 26 6 3.4679 1.7223 4.9421 27 6 4.4649 0.8652 4.5135 28 6 4.7839 0.7907 3.1717 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7510 1.9300 0.9311 35 1 1.6059 1.9813 -0.8422 36 1 3.0768 -0.7673 -4.6859 37 1 4.6908 -0.8002 -5.4356 38 1 3.2680 -0.3462 -6.4045 39 1 3.0560 1.3972 -8.6881 40 1 6.4684 1.3658 -1.6307 41 1 2.5780 3.0590 1.9752 42 1 2.0095 3.1759 4.3671 43 1 3.2197 1.7783 5.9916 44 1 4.9940 0.2529 5.2286 45 1 5.5623 0.1208 2.8377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784870921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:43 Heat of formation + Delta-G solvation = 5.913580 kcal Electronic energy + Delta-G solvation = -27609.387595 eV Core-core repulsion = 23786.383734 eV Total energy + Delta-G solvation = -3823.003861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82620 -39.42967 -38.83582 -35.75857 -35.06074 -33.67995 -33.15848 -31.52237 -30.65176 -29.79318 -29.07353 -26.89760 -25.27465 -23.99350 -23.38101 -22.56775 -21.69494 -21.13483 -20.24651 -19.18052 -17.89613 -16.95813 -16.59130 -16.11155 -15.94649 -15.35793 -15.11282 -14.96403 -14.80224 -14.45023 -14.27089 -14.15091 -13.89006 -13.56080 -13.12412 -12.97285 -12.87162 -12.36757 -12.15799 -11.94275 -11.83465 -11.60654 -11.54039 -11.27096 -11.19256 -11.05401 -10.92539 -10.78054 -10.57979 -10.32651 -10.23918 -10.14009 -9.57681 -9.45576 -9.39871 -8.99778 -8.84955 -8.48574 -8.41520 -6.14778 -4.21037 0.57370 0.92007 1.63240 2.14830 2.27671 3.27380 3.28601 3.32882 3.36996 3.76764 3.81552 4.33459 4.36885 4.43478 4.49443 4.65999 4.77170 4.84026 4.94398 4.99714 5.10790 5.18366 5.21846 5.25143 5.33455 5.51433 5.54726 5.65960 5.71733 5.81898 5.90825 5.95883 6.02693 6.05530 6.11253 6.26019 6.29252 6.35458 6.49225 6.71405 6.95161 6.96192 6.97852 7.24054 7.51267 7.64696 7.78467 7.99556 8.19489 8.72081 8.96498 9.44314 10.92712 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.002823 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.033812 B = 9916.348850 C =10727.150419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.071 4.071 4 C 0.162 3.838 5 C -0.259 4.259 6 C 0.532 3.468 7 O -0.524 6.524 8 O -0.351 6.351 9 C 0.218 3.782 10 H 0.047 0.953 11 C -0.154 4.154 12 C -0.519 4.519 13 H 0.069 0.931 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.911 3.089 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.112 3.888 21 N -0.299 5.299 22 N -0.322 5.322 23 C 0.152 3.848 24 C -0.125 4.125 25 C -0.101 4.101 26 C -0.119 4.119 27 C -0.104 4.104 28 C -0.104 4.104 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.016 0.984 37 H 0.036 0.964 38 H 0.098 0.902 39 H 0.265 0.735 40 H 0.204 0.796 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -0.935 24.433 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.110 4.110 4 C 0.034 3.966 5 C -0.271 4.271 6 C 0.376 3.624 7 O -0.416 6.416 8 O -0.267 6.267 9 C 0.166 3.834 10 H 0.065 0.935 11 C -0.212 4.212 12 C -0.557 4.557 13 H 0.087 0.913 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.738 3.262 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.077 4.077 21 N -0.116 5.116 22 N -0.096 5.096 23 C 0.062 3.938 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.137 4.137 27 C -0.122 4.122 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.221 0.779 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.873 -0.901 25.224 25.309 hybrid contribution 0.104 0.324 -1.578 1.614 sum -1.769 -0.577 23.646 23.719 Atomic orbital electron populations 1.21718 0.94871 1.01867 1.02031 1.21361 0.96459 0.94654 1.02368 1.20761 0.85695 0.99921 1.04617 1.21594 0.93729 0.94769 0.86514 1.19437 0.93233 1.22855 0.91601 1.19749 0.84794 0.72953 0.84862 1.90736 1.16072 1.47954 1.86827 1.86529 1.41013 1.81875 1.17328 1.20608 0.95060 0.94483 0.73275 0.93507 1.22158 0.99336 0.96745 1.02962 1.21038 1.05904 1.37334 0.91415 0.91303 1.24877 0.95542 0.95467 0.98107 1.69900 1.21085 1.44501 1.17284 0.86289 0.80076 0.79545 0.80312 1.20387 1.21029 1.19629 1.24387 0.97130 0.94070 0.92076 1.77342 0.97404 1.26169 1.10651 1.45516 1.04605 1.55817 1.03653 1.17432 0.98347 0.98258 0.79786 1.21210 0.98300 0.98006 0.96972 1.21034 0.99792 0.99255 0.91879 1.21286 0.96088 0.96323 1.00046 1.21092 0.97527 0.98793 0.94822 1.21092 1.00127 0.98429 0.92767 0.92547 0.93022 0.91797 0.90771 0.92661 0.90312 0.86888 0.96511 0.94500 0.88322 0.92465 0.77939 0.84797 0.84879 0.85317 0.85006 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 3 C -0.07 -0.94 4.70 -27.89 -0.13 -1.07 16 4 C 0.16 2.51 6.08 -81.45 -0.50 2.01 16 5 C -0.26 -4.66 6.13 -105.06 -0.64 -5.31 16 6 C 0.53 11.58 7.93 34.40 0.27 11.85 16 7 O -0.52 -12.12 14.22 -19.29 -0.27 -12.40 16 8 O -0.35 -8.50 9.71 -40.64 -0.39 -8.90 16 9 C 0.22 5.89 2.56 -27.89 -0.07 5.82 16 10 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 11 C -0.15 -3.94 9.33 37.16 0.35 -3.60 16 12 C -0.52 -14.63 8.90 -34.44 -0.31 -14.93 16 13 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 16 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.11 1.80 11.87 -16.94 -0.20 1.60 16 21 N -0.30 -4.71 12.35 30.88 0.38 -4.33 16 22 N -0.32 -4.67 3.66 -6.50 -0.02 -4.69 16 23 C 0.15 1.81 6.14 -83.60 -0.51 1.29 16 24 C -0.12 -1.21 8.29 -39.40 -0.33 -1.53 16 25 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 26 C -0.12 -0.79 10.04 -39.54 -0.40 -1.19 16 27 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 28 C -0.10 -1.07 9.86 -39.40 -0.39 -1.46 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.83 4.92 -51.93 -0.26 0.57 16 35 H 0.11 1.68 6.77 -51.93 -0.35 1.33 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.20 2.86 8.06 -52.49 -0.42 2.44 16 41 H 0.13 1.23 6.46 -52.48 -0.34 0.89 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -31.98 379.93 -8.77 -40.75 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.25 Total: 2.35 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.53 Total: -9.96 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.99 Total: -33.75 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.67 Total: -21.29 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.98 -8.77 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784870921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.662 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds