Wall clock time and date at job start Tue Mar 31 2020 15:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 C 1.50699 * 109.47228 * 184.95986 * 3 2 1 5 5 C 1.38153 * 126.30750 * 85.19659 * 4 3 2 6 6 C 1.47263 * 126.42703 * 0.02562 * 5 4 3 7 7 O 1.21528 * 119.99766 * 0.02562 * 6 5 4 8 8 O 1.34755 * 120.00298 * 180.02562 * 6 5 4 9 9 C 1.45203 * 117.00038 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46893 * 30.00153 * 9 8 6 11 11 C 1.52998 * 109.47328 * 270.00326 * 9 8 6 12 12 C 1.50697 * 109.46816 * 150.00172 * 9 8 6 13 13 H 1.08000 * 120.00259 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99797 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00207 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99950 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.46849 * 90.00282 * 16 14 12 18 18 H 1.48499 * 109.47396 * 210.00250 * 16 14 12 19 19 H 1.48495 * 109.47227 * 330.00366 * 16 14 12 20 20 C 1.41389 * 107.15120 * 180.28528 * 5 4 3 21 21 N 1.30456 * 108.05698 * 359.54844 * 20 5 4 22 22 N 1.34499 * 126.31719 * 265.21726 * 4 3 2 23 23 C 1.40145 * 125.76571 * 359.94564 * 22 4 3 24 24 C 1.38852 * 120.06333 * 315.39311 * 23 22 4 25 25 C 1.38117 * 119.92934 * 179.69951 * 24 23 22 26 26 C 1.38287 * 120.06886 * 0.56733 * 25 24 23 27 27 C 1.38288 * 120.13209 * 359.72787 * 26 25 24 28 28 C 1.38117 * 120.06729 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47530 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47453 * 299.99850 * 1 2 3 31 31 H 1.09003 * 109.47448 * 59.99988 * 1 2 3 32 32 H 1.08997 * 109.47178 * 239.99824 * 2 1 3 33 33 H 1.09000 * 109.46811 * 119.99639 * 2 1 3 34 34 H 1.09003 * 109.47188 * 64.96213 * 3 2 1 35 35 H 1.09000 * 109.47296 * 304.96408 * 3 2 1 36 36 H 1.09000 * 109.47293 * 59.99763 * 11 9 8 37 37 H 1.09003 * 109.47417 * 300.00380 * 11 9 8 38 38 H 1.08999 * 109.47525 * 179.97438 * 11 9 8 39 39 H 0.96996 * 120.00029 * 179.97438 * 15 14 12 40 40 H 1.07994 * 125.96536 * 179.73987 * 20 5 4 41 41 H 1.08003 * 120.03414 * 359.97438 * 24 23 22 42 42 H 1.07997 * 119.97080 * 180.30030 * 25 24 23 43 43 H 1.07993 * 119.93421 * 179.75035 * 26 25 24 44 44 H 1.07999 * 119.96368 * 180.02562 * 27 26 25 45 45 H 1.07994 * 120.02912 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5419 1.4443 -0.1228 5 6 4.2667 1.3840 -1.2974 6 6 3.7167 1.3067 -2.6613 7 8 2.5135 1.2915 -2.8313 8 8 4.5476 1.2528 -3.7209 9 6 3.9355 1.1773 -5.0354 10 1 2.9726 1.6879 -5.0177 11 6 3.7279 -0.2895 -5.4179 12 6 4.8358 1.8378 -6.0474 13 1 5.7744 2.2706 -5.7340 14 6 4.4619 1.8886 -7.3735 15 7 3.3192 1.3611 -7.7552 16 14 5.5782 2.7067 -8.6280 17 1 6.5150 1.6997 -9.1882 18 1 4.7555 3.2805 -9.7231 19 1 6.3517 3.7903 -7.9702 20 6 5.6356 1.4044 -0.9442 21 7 5.7168 1.4821 0.3555 22 7 4.4240 1.5044 0.8907 23 6 4.1027 1.5778 2.2529 24 6 3.1064 2.4420 2.6870 25 6 2.7877 2.5076 4.0293 26 6 3.4679 1.7223 4.9421 27 6 4.4649 0.8652 4.5135 28 6 4.7839 0.7907 3.1717 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7510 1.9300 0.9311 35 1 1.6059 1.9813 -0.8422 36 1 3.0768 -0.7673 -4.6859 37 1 4.6908 -0.8002 -5.4356 38 1 3.2680 -0.3462 -6.4045 39 1 3.0560 1.3972 -8.6881 40 1 6.4684 1.3658 -1.6307 41 1 2.5780 3.0590 1.9752 42 1 2.0095 3.1759 4.3671 43 1 3.2197 1.7783 5.9916 44 1 4.9940 0.2529 5.2286 45 1 5.5623 0.1208 2.8377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784870921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:42 Heat of formation + Delta-G solvation = -9.904650 kcal Electronic energy + Delta-G solvation = -27610.073525 eV Core-core repulsion = 23786.383734 eV Total energy + Delta-G solvation = -3823.689791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.01840 -40.89260 -39.91486 -37.51512 -36.26794 -35.27852 -34.62807 -32.29512 -31.88574 -31.49403 -30.22005 -28.03776 -27.42809 -25.22916 -24.25308 -23.73035 -22.72677 -22.67815 -21.51199 -20.68418 -19.18445 -18.66068 -17.84594 -17.50193 -17.08647 -17.03291 -16.43984 -16.33812 -16.04839 -15.90108 -15.28247 -15.08036 -14.82901 -14.70774 -14.47247 -14.19344 -14.10105 -13.84073 -13.75647 -13.25785 -13.16802 -12.98856 -12.78115 -12.66778 -12.56451 -12.38602 -12.35533 -12.21953 -12.14527 -12.08230 -11.63316 -11.53046 -11.28421 -11.13152 -10.95858 -10.57622 -10.14204 -10.04721 -9.48383 -8.26814 -6.43025 -0.30597 0.28766 0.46947 0.94696 1.05417 1.42899 1.44996 1.56229 2.08738 2.15493 2.44252 2.65829 3.03841 3.24589 3.51114 3.65393 3.84265 3.86563 3.94493 3.99585 4.13875 4.18468 4.33675 4.38542 4.40142 4.46105 4.56974 4.62500 4.67002 4.76731 4.82322 4.84013 4.88301 4.96979 5.07081 5.11656 5.21312 5.24183 5.31613 5.33728 5.34724 5.46064 5.51024 5.65671 5.67389 5.93930 6.00858 6.11238 6.28800 6.62522 7.03695 7.29095 8.81085 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.002823 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.033812 B = 9916.348850 C =10727.150419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.068 4.068 4 C 0.175 3.825 5 C -0.295 4.295 6 C 0.529 3.471 7 O -0.546 6.546 8 O -0.358 6.358 9 C 0.222 3.778 10 H 0.010 0.990 11 C -0.141 4.141 12 C -0.547 4.547 13 H 0.067 0.933 14 C 0.017 3.983 15 N -0.917 5.917 16 Si 0.982 3.018 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.266 1.266 20 C 0.110 3.890 21 N -0.307 5.307 22 N -0.309 5.309 23 C 0.109 3.891 24 C -0.132 4.132 25 C -0.095 4.095 26 C -0.105 4.105 27 C -0.101 4.101 28 C -0.117 4.117 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.022 0.978 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.271 0.729 40 H 0.216 0.784 41 H 0.135 0.865 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 -0.397 27.496 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.107 4.107 4 C 0.044 3.956 5 C -0.308 4.308 6 C 0.376 3.624 7 O -0.439 6.439 8 O -0.275 6.275 9 C 0.169 3.831 10 H 0.028 0.972 11 C -0.199 4.199 12 C -0.584 4.584 13 H 0.085 0.915 14 C -0.183 4.183 15 N -0.555 5.555 16 Si 0.805 3.195 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.078 4.078 21 N -0.124 5.124 22 N -0.082 5.082 23 C 0.020 3.980 24 C -0.152 4.152 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.232 0.768 41 H 0.152 0.848 42 H 0.182 0.818 43 H 0.182 0.818 44 H 0.176 0.824 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.864 -0.370 28.337 28.401 hybrid contribution 0.033 0.163 -2.248 2.254 sum -1.831 -0.207 26.090 26.155 Atomic orbital electron populations 1.21696 0.93145 1.02676 1.02523 1.21314 0.97909 0.93868 1.01294 1.20829 0.84063 1.00414 1.05348 1.21851 0.94766 0.92853 0.86085 1.19268 0.94588 1.26687 0.90228 1.20306 0.84522 0.72090 0.85523 1.90709 1.16869 1.49152 1.87171 1.86509 1.41308 1.82615 1.17031 1.20325 0.93437 0.94663 0.74721 0.97237 1.21977 0.99613 0.96199 1.02069 1.21298 1.06196 1.38538 0.92413 0.91489 1.25813 0.96984 0.95641 0.99865 1.70017 1.22508 1.44908 1.18024 0.85191 0.78138 0.78691 0.77440 1.19191 1.20234 1.19065 1.24554 0.96787 0.93939 0.92497 1.77294 0.98576 1.26319 1.10207 1.45722 1.03765 1.53983 1.04737 1.17877 1.00743 1.00986 0.78433 1.21353 0.97759 0.97705 0.98376 1.21435 1.00049 0.99236 0.90652 1.21762 0.94433 0.94419 1.01717 1.21437 0.97671 0.98961 0.93857 1.21177 1.00069 0.98494 0.93912 0.91618 0.90388 0.93393 0.94204 0.91292 0.87060 0.88945 0.95888 0.93736 0.89969 0.92004 0.76778 0.84773 0.81829 0.81783 0.82404 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 3 C -0.07 -1.81 4.70 29.85 0.14 -1.67 16 4 C 0.18 5.56 6.08 42.13 0.26 5.82 16 5 C -0.30 -11.17 6.13 -20.15 -0.12 -11.30 16 6 C 0.53 24.49 7.93 70.20 0.56 25.04 16 7 O -0.55 -27.01 14.22 19.75 0.28 -26.73 16 8 O -0.36 -18.29 9.71 -56.66 -0.55 -18.84 16 9 C 0.22 12.58 2.56 29.85 0.08 12.65 16 10 H 0.01 0.62 7.16 -2.39 -0.02 0.60 16 11 C -0.14 -7.50 9.33 71.98 0.67 -6.82 16 12 C -0.55 -31.77 8.90 25.60 0.23 -31.54 16 13 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 14 C 0.02 0.93 5.30 84.65 0.45 1.38 16 15 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 16 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.11 3.70 11.87 85.67 1.02 4.72 16 21 N -0.31 -9.86 12.35 -56.21 -0.69 -10.55 16 22 N -0.31 -9.00 3.66 -174.47 -0.64 -9.64 16 23 C 0.11 2.45 6.14 38.10 0.23 2.68 16 24 C -0.13 -2.24 8.29 22.39 0.19 -2.05 16 25 C -0.10 -0.98 10.04 22.25 0.22 -0.76 16 26 C -0.11 -0.89 10.04 22.29 0.22 -0.67 16 27 C -0.10 -1.17 10.04 22.25 0.22 -0.95 16 28 C -0.12 -2.21 9.86 22.39 0.22 -1.99 16 29 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 2.18 4.92 -2.39 -0.01 2.17 16 35 H 0.09 2.89 6.77 -2.39 -0.02 2.87 16 36 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 4.64 6.07 -2.39 -0.01 4.63 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.22 6.35 8.06 -2.91 -0.02 6.33 16 41 H 0.13 2.19 6.46 -2.91 -0.02 2.17 16 42 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.16 0.31 8.06 -2.91 -0.02 0.28 16 44 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 45 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -72.71 379.93 7.14 -65.57 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.00 Total: 17.85 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.48 Total: -10.20 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.09 Total: -73.28 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.27 Total: -45.57 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.71 7.14 -65.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784870921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.661 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds