Wall clock time and date at job start Tue Mar 31 2020 16:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47464 * 120.00348 * 2 1 3 5 5 N 1.46494 * 109.47404 * 65.61235 * 4 2 1 6 6 C 1.46504 * 120.00117 * 84.45834 * 5 4 2 7 7 C 1.50701 * 109.47152 * 97.19823 * 6 5 4 8 8 H 1.07996 * 119.99897 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99952 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99855 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00098 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47378 * 90.00086 * 11 9 7 13 13 H 1.48500 * 109.47126 * 209.99977 * 11 9 7 14 14 H 1.48504 * 109.47029 * 329.99571 * 11 9 7 15 15 C 1.34779 * 120.00381 * 264.46278 * 5 4 2 16 16 O 1.21547 * 119.99797 * 356.75926 * 15 5 4 17 17 C 1.47925 * 120.00159 * 176.76040 * 15 5 4 18 18 C 1.38259 * 119.24345 * 186.80045 * 17 15 5 19 19 C 1.40696 * 118.65105 * 179.97438 * 18 17 15 20 20 C 1.40234 * 122.05252 * 179.97438 * 19 18 17 21 21 C 1.36313 * 119.47982 * 179.97438 * 20 19 18 22 22 C 1.39245 * 120.94397 * 0.04294 * 21 20 19 23 23 C 1.36361 * 121.06101 * 359.95994 * 22 21 20 24 24 C 1.40044 * 119.58983 * 0.02562 * 23 22 21 25 25 C 1.41348 * 121.85739 * 179.97438 * 24 23 22 26 26 O 1.35494 * 119.95013 * 0.02562 * 25 24 23 27 27 N 1.31391 * 120.09466 * 179.76534 * 25 24 23 28 28 H 1.09001 * 109.46838 * 184.79573 * 1 2 3 29 29 H 1.09001 * 109.47278 * 304.79501 * 1 2 3 30 30 H 1.08995 * 109.47424 * 64.79881 * 1 2 3 31 31 H 1.08999 * 109.47418 * 240.00443 * 2 1 3 32 32 H 1.08997 * 109.47148 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47329 * 300.00301 * 3 2 1 34 34 H 1.09002 * 109.46793 * 60.00456 * 3 2 1 35 35 H 1.09000 * 109.46977 * 305.61745 * 4 2 1 36 36 H 1.09001 * 109.47633 * 185.61570 * 4 2 1 37 37 H 1.08997 * 109.47623 * 217.20139 * 6 5 4 38 38 H 1.09001 * 109.46772 * 337.20322 * 6 5 4 39 39 H 0.97001 * 120.00599 * 179.97438 * 10 9 7 40 40 H 1.08000 * 120.67609 * 359.95329 * 18 17 15 41 41 H 1.08001 * 120.26193 * 359.97438 * 20 19 18 42 42 H 1.08005 * 119.52578 * 179.97438 * 21 20 19 43 43 H 1.08001 * 119.46930 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.20504 * 180.02562 * 23 22 21 45 45 H 0.96700 * 113.99721 * 90.00709 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6652 -2.1359 1.1835 6 6 2.5077 -3.0837 0.4498 7 6 3.4248 -3.7912 1.4139 8 1 3.3839 -3.5585 2.4677 9 6 4.3161 -4.7356 0.9505 10 7 5.1168 -5.3527 1.7917 11 14 4.3874 -5.1376 -0.8723 12 1 5.3699 -4.2451 -1.5381 13 1 4.8028 -6.5521 -1.0514 14 1 3.0460 -4.9355 -1.4766 15 6 0.5452 -2.5656 1.7980 16 8 -0.1223 -1.7915 2.4556 17 6 0.1284 -3.9793 1.6721 18 6 -1.0928 -4.3720 2.1879 19 6 -1.4770 -5.7195 2.0607 20 6 -2.6990 -6.1950 2.5579 21 6 -3.0187 -7.5113 2.4054 22 6 -2.1491 -8.3896 1.7640 23 6 -0.9534 -7.9598 1.2691 24 6 -0.5913 -6.6140 1.4072 25 6 0.6362 -6.1172 0.9130 26 8 1.4996 -6.9511 0.2846 27 7 0.9388 -4.8468 1.0576 28 1 -0.3633 -1.0241 0.0859 29 1 -0.3634 0.5864 0.8439 30 1 -0.3634 0.4375 -0.9298 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.5969 -0.2689 2.1363 36 1 3.1254 -0.6350 1.3009 37 1 1.8769 -3.8154 -0.0550 38 1 3.1021 -2.5454 -0.2885 39 1 5.7437 -6.0174 1.4659 40 1 -1.7385 -3.6589 2.6788 41 1 -3.3815 -5.5236 3.0579 42 1 -3.9594 -7.8784 2.7884 43 1 -2.4263 -9.4279 1.6566 44 1 -0.2896 -8.6529 0.7737 45 1 1.3647 -7.0096 -0.6711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792520772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:04 Heat of formation + Delta-G solvation = -1.005473 kcal Electronic energy + Delta-G solvation = -28919.546954 eV Core-core repulsion = 25096.243060 eV Total energy + Delta-G solvation = -3823.303894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86968 -39.26628 -37.64534 -36.48885 -35.84427 -34.06151 -32.15314 -32.02573 -31.03002 -29.27851 -27.95536 -26.89467 -26.16091 -23.83577 -23.75613 -22.35832 -21.93606 -20.43040 -19.25905 -18.02506 -17.64477 -17.33812 -16.83660 -16.03019 -15.72533 -15.39202 -15.07302 -14.75042 -14.33732 -14.27438 -13.99171 -13.69404 -13.55120 -13.41842 -13.01311 -12.85380 -12.58292 -12.14445 -12.10241 -11.96491 -11.76382 -11.58138 -11.47120 -11.34013 -11.15975 -11.01684 -10.84090 -10.61479 -10.46424 -10.26691 -10.05635 -9.90163 -9.64135 -9.35410 -9.00592 -8.55719 -8.23774 -7.91040 -7.53773 -5.96276 -3.88779 0.38641 0.90415 1.95144 2.81044 3.31628 3.36995 3.39944 3.61034 3.71407 3.91982 4.30554 4.50384 4.66295 4.74255 4.88028 4.93668 5.16934 5.18784 5.21677 5.23995 5.32551 5.40850 5.43081 5.59919 5.80492 5.82189 5.87978 5.90224 5.94926 6.00895 6.04430 6.11022 6.22175 6.27835 6.33943 6.39167 6.43443 6.55363 6.58895 6.62786 6.71344 6.82902 7.18591 7.50190 7.74260 7.81628 8.16424 8.27677 8.60692 8.88044 9.07124 9.66061 11.17759 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.005797 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.387865 B = 4829.273026 C = 6922.728862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.118 3.882 5 N -0.567 5.567 6 C 0.198 3.802 7 C -0.497 4.497 8 H 0.067 0.933 9 C 0.082 3.918 10 N -0.900 5.900 11 Si 0.880 3.120 12 H -0.286 1.286 13 H -0.287 1.287 14 H -0.266 1.266 15 C 0.570 3.430 16 O -0.563 6.563 17 C 0.095 3.905 18 C -0.113 4.113 19 C -0.025 4.025 20 C -0.105 4.105 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.080 4.080 24 C -0.108 4.108 25 C 0.337 3.663 26 O -0.462 6.462 27 N -0.415 5.415 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.014 0.986 39 H 0.261 0.739 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.534 -0.727 -4.940 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.199 4.199 4 C -0.005 4.005 5 N -0.294 5.294 6 C 0.078 3.922 7 C -0.536 4.536 8 H 0.085 0.915 9 C -0.120 4.120 10 N -0.539 5.539 11 Si 0.708 3.292 12 H -0.213 1.213 13 H -0.213 1.213 14 H -0.191 1.191 15 C 0.357 3.643 16 O -0.444 6.444 17 C -0.031 4.031 18 C -0.134 4.134 19 C -0.030 4.030 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.100 4.100 24 C -0.112 4.112 25 C 0.143 3.857 26 O -0.268 6.268 27 N -0.134 5.134 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -13.685 -0.142 -4.347 14.360 hybrid contribution -0.386 -0.824 -1.001 1.353 sum -14.071 -0.966 -5.348 15.084 Atomic orbital electron populations 1.21747 0.95078 1.01945 1.00618 1.21513 0.96376 0.96036 0.99317 1.21748 1.00996 0.95704 1.01478 1.21506 1.00327 0.80988 0.97726 1.47872 1.22528 1.08739 1.50251 1.20522 0.90957 0.88084 0.92665 1.21112 1.16730 1.20681 0.95101 0.91494 1.24677 0.95035 0.95166 0.97124 1.69894 1.22929 1.26657 1.34408 0.86816 0.78216 0.77616 0.86503 1.21256 1.21316 1.19107 1.17716 0.81254 0.85647 0.79689 1.90691 1.55551 1.55524 1.42610 1.20735 0.91049 0.94061 0.97242 1.22084 0.97297 0.94986 0.99059 1.17989 0.94642 0.92904 0.97493 1.20958 0.95310 0.96216 0.99857 1.20921 0.99601 0.93484 0.98522 1.20904 0.94466 0.99909 0.99014 1.20965 0.96470 0.94084 0.98485 1.19158 0.94657 0.95307 1.02072 1.19430 0.85403 0.86874 0.93981 1.84846 1.56056 1.61186 1.24728 1.68027 1.29371 1.02267 1.13760 0.92890 0.92576 0.93752 0.91149 0.92555 0.92904 0.92673 0.90252 0.90310 0.90439 0.96827 0.92911 0.83321 0.85002 0.85750 0.85784 0.84746 0.75088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.50 37.16 0.32 -1.75 16 2 C -0.11 -1.72 3.12 -90.62 -0.28 -2.01 16 3 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 4 C 0.12 2.16 4.93 -4.05 -0.02 2.14 16 5 N -0.57 -12.10 2.28 -176.15 -0.40 -12.50 16 6 C 0.20 4.64 3.86 -5.19 -0.02 4.62 16 7 C -0.50 -13.79 8.50 -34.44 -0.29 -14.08 16 8 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 9 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 10 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 11 Si 0.88 21.05 27.36 -169.99 -4.65 16.40 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 15 C 0.57 12.25 6.10 -12.29 -0.08 12.17 16 16 O -0.56 -12.29 14.91 5.32 0.08 -12.21 16 17 C 0.10 1.95 6.62 -83.09 -0.55 1.40 16 18 C -0.11 -1.94 9.40 -38.65 -0.36 -2.31 16 19 C -0.03 -0.39 5.74 -106.84 -0.61 -1.01 16 20 C -0.11 -1.27 9.81 -39.53 -0.39 -1.65 16 21 C -0.11 -1.10 9.95 -39.90 -0.40 -1.49 16 22 C -0.12 -1.33 9.95 -39.88 -0.40 -1.73 16 23 C -0.08 -1.04 9.58 -39.58 -0.38 -1.41 16 24 C -0.11 -1.74 5.76 -106.66 -0.61 -2.35 16 25 C 0.34 6.35 7.80 -16.56 -0.13 6.22 16 26 O -0.46 -8.22 12.72 -18.17 -0.23 -8.45 16 27 N -0.41 -8.87 4.86 -9.60 -0.05 -8.92 16 28 H 0.05 0.91 6.17 -51.93 -0.32 0.59 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.47 7.22 -51.93 -0.38 1.10 16 36 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 37 H 0.08 1.82 4.26 -53.41 -0.23 1.60 16 38 H 0.01 0.32 7.44 -51.93 -0.39 -0.07 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.15 2.32 7.61 -52.49 -0.40 1.92 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.13 1.52 7.65 -52.49 -0.40 1.12 16 45 H 0.39 4.93 9.06 45.56 0.41 5.34 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -33.98 368.05 -8.41 -42.39 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.51 Total: 6.94 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.96 Total: -2.44 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.33 Total: -48.18 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.15 Total: -20.66 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.65 Total: 16.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.98 -8.41 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792520772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.383 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds