Wall clock time and date at job start Tue Mar 31 2020 16:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47464 * 120.00348 * 2 1 3 5 5 N 1.46494 * 109.47404 * 65.61235 * 4 2 1 6 6 C 1.46504 * 120.00117 * 84.45834 * 5 4 2 7 7 C 1.50701 * 109.47152 * 97.19823 * 6 5 4 8 8 H 1.07996 * 119.99897 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99952 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99855 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00098 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47378 * 90.00086 * 11 9 7 13 13 H 1.48500 * 109.47126 * 209.99977 * 11 9 7 14 14 H 1.48504 * 109.47029 * 329.99571 * 11 9 7 15 15 C 1.34779 * 120.00381 * 264.46278 * 5 4 2 16 16 O 1.21547 * 119.99797 * 356.75926 * 15 5 4 17 17 C 1.47925 * 120.00159 * 176.76040 * 15 5 4 18 18 C 1.38259 * 119.24345 * 186.80045 * 17 15 5 19 19 C 1.40696 * 118.65105 * 179.97438 * 18 17 15 20 20 C 1.40234 * 122.05252 * 179.97438 * 19 18 17 21 21 C 1.36313 * 119.47982 * 179.97438 * 20 19 18 22 22 C 1.39245 * 120.94397 * 0.04294 * 21 20 19 23 23 C 1.36361 * 121.06101 * 359.95994 * 22 21 20 24 24 C 1.40044 * 119.58983 * 0.02562 * 23 22 21 25 25 C 1.41348 * 121.85739 * 179.97438 * 24 23 22 26 26 O 1.35494 * 119.95013 * 0.02562 * 25 24 23 27 27 N 1.31391 * 120.09466 * 179.76534 * 25 24 23 28 28 H 1.09001 * 109.46838 * 184.79573 * 1 2 3 29 29 H 1.09001 * 109.47278 * 304.79501 * 1 2 3 30 30 H 1.08995 * 109.47424 * 64.79881 * 1 2 3 31 31 H 1.08999 * 109.47418 * 240.00443 * 2 1 3 32 32 H 1.08997 * 109.47148 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47329 * 300.00301 * 3 2 1 34 34 H 1.09002 * 109.46793 * 60.00456 * 3 2 1 35 35 H 1.09000 * 109.46977 * 305.61745 * 4 2 1 36 36 H 1.09001 * 109.47633 * 185.61570 * 4 2 1 37 37 H 1.08997 * 109.47623 * 217.20139 * 6 5 4 38 38 H 1.09001 * 109.46772 * 337.20322 * 6 5 4 39 39 H 0.97001 * 120.00599 * 179.97438 * 10 9 7 40 40 H 1.08000 * 120.67609 * 359.95329 * 18 17 15 41 41 H 1.08001 * 120.26193 * 359.97438 * 20 19 18 42 42 H 1.08005 * 119.52578 * 179.97438 * 21 20 19 43 43 H 1.08001 * 119.46930 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.20504 * 180.02562 * 23 22 21 45 45 H 0.96700 * 113.99721 * 90.00709 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6652 -2.1359 1.1835 6 6 2.5077 -3.0837 0.4498 7 6 3.4248 -3.7912 1.4139 8 1 3.3839 -3.5585 2.4677 9 6 4.3161 -4.7356 0.9505 10 7 5.1168 -5.3527 1.7917 11 14 4.3874 -5.1376 -0.8723 12 1 5.3699 -4.2451 -1.5381 13 1 4.8028 -6.5521 -1.0514 14 1 3.0460 -4.9355 -1.4766 15 6 0.5452 -2.5656 1.7980 16 8 -0.1223 -1.7915 2.4556 17 6 0.1284 -3.9793 1.6721 18 6 -1.0928 -4.3720 2.1879 19 6 -1.4770 -5.7195 2.0607 20 6 -2.6990 -6.1950 2.5579 21 6 -3.0187 -7.5113 2.4054 22 6 -2.1491 -8.3896 1.7640 23 6 -0.9534 -7.9598 1.2691 24 6 -0.5913 -6.6140 1.4072 25 6 0.6362 -6.1172 0.9130 26 8 1.4996 -6.9511 0.2846 27 7 0.9388 -4.8468 1.0576 28 1 -0.3633 -1.0241 0.0859 29 1 -0.3634 0.5864 0.8439 30 1 -0.3634 0.4375 -0.9298 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.5969 -0.2689 2.1363 36 1 3.1254 -0.6350 1.3009 37 1 1.8769 -3.8154 -0.0550 38 1 3.1021 -2.5454 -0.2885 39 1 5.7437 -6.0174 1.4659 40 1 -1.7385 -3.6589 2.6788 41 1 -3.3815 -5.5236 3.0579 42 1 -3.9594 -7.8784 2.7884 43 1 -2.4263 -9.4279 1.6566 44 1 -0.2896 -8.6529 0.7737 45 1 1.3647 -7.0096 -0.6711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792520772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:03 Heat of formation + Delta-G solvation = -24.100006 kcal Electronic energy + Delta-G solvation = -28920.548408 eV Core-core repulsion = 25096.243060 eV Total energy + Delta-G solvation = -3824.305348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15568 -40.75665 -38.84119 -37.80473 -37.35315 -35.63066 -34.14520 -33.21960 -32.14033 -30.53574 -29.87553 -28.07391 -27.53012 -25.14095 -24.99321 -24.22872 -23.07681 -21.72578 -20.62356 -19.47031 -19.02263 -18.83759 -18.58755 -17.47664 -17.06974 -16.77667 -16.52366 -16.16664 -15.89223 -15.54265 -15.32177 -14.99365 -14.85162 -14.67349 -14.47935 -14.20650 -14.04232 -13.78685 -13.63018 -13.11559 -12.95296 -12.85177 -12.78793 -12.71520 -12.63734 -12.39231 -12.20491 -12.09270 -11.86368 -11.75430 -11.64650 -11.54146 -11.22423 -11.03142 -10.67294 -10.08134 -9.80513 -9.40227 -8.93740 -8.15410 -6.13777 -0.80317 -0.23723 0.84044 1.38906 1.41095 1.48472 1.53646 2.18101 2.36756 2.46826 2.58737 3.01598 3.25863 3.40371 3.62320 3.74664 3.88574 3.91568 4.00582 4.07082 4.16921 4.27669 4.31571 4.46283 4.58400 4.62584 4.69657 4.74103 4.76034 4.83517 4.89584 4.94882 5.00311 5.05315 5.05717 5.19025 5.29223 5.40616 5.42661 5.43926 5.46459 5.51509 5.63340 5.82345 5.90511 6.27118 6.56373 6.61753 6.80612 6.90689 7.25918 7.47439 9.02873 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.005797 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.387865 B = 4829.273026 C = 6922.728862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.113 3.887 5 N -0.576 5.576 6 C 0.212 3.788 7 C -0.490 4.490 8 H 0.007 0.993 9 C 0.025 3.975 10 N -0.956 5.956 11 Si 0.947 3.053 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.236 1.236 15 C 0.565 3.435 16 O -0.577 6.577 17 C 0.050 3.950 18 C -0.098 4.098 19 C -0.043 4.043 20 C -0.109 4.109 21 C -0.091 4.091 22 C -0.104 4.104 23 C -0.097 4.097 24 C -0.117 4.117 25 C 0.326 3.674 26 O -0.478 6.478 27 N -0.458 5.458 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.021 0.979 39 H 0.260 0.740 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.147 0.853 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.819 -2.160 -6.645 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 C -0.193 4.193 4 C -0.010 4.010 5 N -0.303 5.303 6 C 0.091 3.909 7 C -0.529 4.529 8 H 0.025 0.975 9 C -0.171 4.171 10 N -0.598 5.598 11 Si 0.771 3.229 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.159 1.159 15 C 0.353 3.647 16 O -0.460 6.460 17 C -0.075 4.075 18 C -0.119 4.119 19 C -0.047 4.047 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.120 4.120 25 C 0.131 3.869 26 O -0.287 6.287 27 N -0.178 5.178 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.177 0.823 41 H 0.175 0.825 42 H 0.185 0.815 43 H 0.181 0.819 44 H 0.165 0.835 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -16.997 -1.538 -6.067 18.112 hybrid contribution 0.412 -0.555 -0.297 0.753 sum -16.584 -2.094 -6.364 17.886 Atomic orbital electron populations 1.21677 0.94763 1.00475 1.01767 1.21465 0.96551 0.97443 0.97106 1.21710 1.01213 0.93597 1.02760 1.21680 0.99894 0.80054 0.99340 1.47897 1.22466 1.09522 1.50390 1.20247 0.90492 0.88433 0.91755 1.21128 1.17723 1.21108 0.92951 0.97459 1.25537 0.94347 0.94766 1.02450 1.70078 1.24502 1.28107 1.37117 0.85744 0.79738 0.77308 0.80082 1.20630 1.21084 1.15926 1.18053 0.81053 0.86476 0.79123 1.90642 1.55960 1.56208 1.43170 1.20630 0.92787 0.93420 1.00644 1.22257 0.95980 0.96294 0.97345 1.18261 0.96251 0.91996 0.98240 1.21305 0.94109 0.97757 0.99486 1.21473 1.00767 0.92397 0.96363 1.21444 0.92810 1.01864 0.96007 1.21190 0.98072 0.92759 0.99668 1.19295 0.93700 0.96977 1.02068 1.19689 0.86472 0.86403 0.94327 1.84791 1.56554 1.60845 1.26480 1.67670 1.30754 1.03754 1.15664 0.95412 0.92911 0.91218 0.91472 0.92225 0.90736 0.92242 0.91056 0.91152 0.89585 0.96094 0.93080 0.82333 0.82484 0.81460 0.81883 0.83545 0.72926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.50 71.98 0.61 -3.25 16 2 C -0.11 -3.22 3.12 -10.80 -0.03 -3.26 16 3 C -0.14 -3.16 9.19 71.98 0.66 -2.50 16 4 C 0.11 4.33 4.93 86.38 0.43 4.75 16 5 N -0.58 -25.90 2.28 -829.48 -1.89 -27.79 16 6 C 0.21 10.30 3.86 85.63 0.33 10.63 16 7 C -0.49 -28.81 8.50 25.60 0.22 -28.60 16 8 H 0.01 0.49 8.06 -2.91 -0.02 0.46 16 9 C 0.03 1.49 5.47 84.66 0.46 1.96 16 10 N -0.96 -61.56 13.96 21.45 0.30 -61.26 16 11 Si 0.95 44.18 27.36 68.60 1.88 46.06 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 15 C 0.56 25.63 6.10 86.81 0.53 26.16 16 16 O -0.58 -26.45 14.91 -3.86 -0.06 -26.51 16 17 C 0.05 2.14 6.62 41.44 0.27 2.42 16 18 C -0.10 -3.40 9.40 22.88 0.22 -3.19 16 19 C -0.04 -1.27 5.74 -21.30 -0.12 -1.39 16 20 C -0.11 -2.22 9.81 22.31 0.22 -2.00 16 21 C -0.09 -1.38 9.95 22.06 0.22 -1.16 16 22 C -0.10 -1.68 9.95 22.07 0.22 -1.46 16 23 C -0.10 -2.23 9.58 22.27 0.21 -2.02 16 24 C -0.12 -3.65 5.76 -21.19 -0.12 -3.77 16 25 C 0.33 12.48 7.80 85.52 0.67 13.15 16 26 O -0.48 -17.05 12.72 -87.94 -1.12 -18.17 16 27 N -0.46 -20.39 4.86 -297.68 -1.45 -21.84 16 28 H 0.03 0.95 6.17 -2.39 -0.01 0.94 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 2.80 7.22 -2.39 -0.02 2.78 16 36 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 37 H 0.09 4.14 4.26 -5.31 -0.02 4.12 16 38 H 0.02 0.98 7.44 -2.39 -0.02 0.96 16 39 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.16 4.98 7.61 -2.91 -0.02 4.96 16 41 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.15 2.94 7.65 -2.91 -0.02 2.92 16 45 H 0.41 10.09 9.06 -74.06 -0.67 9.42 16 Total: -1.00 -80.83 368.05 2.93 -77.90 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.28 Total: 25.13 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 4.99 Total: 6.48 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.04 Total: -110.89 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.18 Total: -44.67 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -80.83 2.93 -77.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792520772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.798 kcal (2) G-P(sol) polarization free energy of solvation -80.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds