Wall clock time and date at job start Tue Mar 31 2020 16:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46835 * 2 1 4 4 C 1.52998 * 109.47069 * 119.99300 * 2 1 3 5 5 N 1.46498 * 109.47189 * 174.45817 * 4 2 1 6 6 C 1.46498 * 120.00147 * 275.60273 * 5 4 2 7 7 C 1.50693 * 109.47229 * 265.83608 * 6 5 4 8 8 H 1.08004 * 120.00309 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00117 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99814 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00249 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47077 * 90.00407 * 11 9 7 13 13 H 1.48498 * 109.47564 * 210.00307 * 11 9 7 14 14 H 1.48501 * 109.47400 * 330.00763 * 11 9 7 15 15 C 1.34780 * 120.00052 * 95.32981 * 5 4 2 16 16 O 1.21500 * 119.99650 * 355.01403 * 15 5 4 17 17 C 1.48344 * 120.00229 * 175.01784 * 15 5 4 18 18 C 1.41918 * 126.84515 * 174.28414 * 17 15 5 19 19 C 1.36711 * 103.81514 * 179.85735 * 18 17 15 20 20 C 1.47860 * 126.81640 * 180.13097 * 19 18 17 21 21 C 1.39564 * 120.13866 * 0.02562 * 20 19 18 22 22 C 1.37966 * 119.84492 * 179.77247 * 21 20 19 23 23 C 1.38351 * 120.14724 * 0.50438 * 22 21 20 24 24 C 1.38357 * 120.29049 * 359.74644 * 23 22 21 25 25 C 1.37960 * 120.14151 * 359.97438 * 24 23 22 26 26 O 1.34462 * 106.36553 * 0.39633 * 19 18 17 27 27 N 1.20876 * 111.73691 * 359.73114 * 26 19 18 28 28 H 1.09000 * 109.46837 * 300.00283 * 1 2 3 29 29 H 1.08994 * 109.46712 * 60.00752 * 1 2 3 30 30 H 1.08999 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47628 * 239.99460 * 2 1 3 32 32 H 1.09002 * 109.46715 * 305.45213 * 3 2 1 33 33 H 1.08996 * 109.47170 * 65.45761 * 3 2 1 34 34 H 1.09005 * 109.47076 * 185.46108 * 3 2 1 35 35 H 1.09003 * 109.47012 * 54.45867 * 4 2 1 36 36 H 1.08999 * 109.47431 * 294.46339 * 4 2 1 37 37 H 1.08999 * 109.46891 * 25.84033 * 6 5 4 38 38 H 1.09004 * 109.46930 * 145.83654 * 6 5 4 39 39 H 0.96999 * 120.00052 * 180.02562 * 10 9 7 40 40 H 1.08002 * 128.08647 * 359.97438 * 18 17 15 41 41 H 1.07992 * 120.07989 * 359.97438 * 21 20 19 42 42 H 1.08005 * 119.92544 * 180.25377 * 22 21 20 43 43 H 1.08002 * 119.85200 * 179.72333 * 23 22 21 44 44 H 1.07999 * 119.92812 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.07156 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.4989 -0.8377 1.1845 6 6 4.1133 -1.9463 0.4499 7 6 4.4070 -3.0776 1.4010 8 1 4.1611 -2.9805 2.4482 9 6 4.9897 -4.2369 0.9345 10 7 5.2896 -4.3551 -0.3405 11 14 5.3545 -5.6390 2.1136 12 1 4.1826 -6.5487 2.1786 13 1 6.5405 -6.3932 1.6342 14 1 5.6303 -5.0899 3.4655 15 6 4.2760 0.0780 1.7962 16 8 3.7704 1.0487 2.3237 17 6 5.7485 -0.0992 1.8252 18 6 6.7068 0.8211 2.3242 19 6 7.9020 0.1882 2.1246 20 6 9.2450 0.7020 2.4688 21 6 9.3840 1.9573 3.0628 22 6 10.6397 2.4288 3.3857 23 6 11.7603 1.6648 3.1125 24 6 11.6297 0.4218 2.5191 25 6 10.3794 -0.0638 2.1964 26 8 7.6142 -0.9918 1.5478 27 7 6.4243 -1.1345 1.3899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 1.5991 1.9837 -0.8372 33 1 1.7586 1.9274 0.9348 34 1 3.1256 1.4442 -0.0978 35 1 1.5979 -1.7161 1.3004 36 1 1.7599 -0.1531 2.1365 37 1 3.4293 -2.2917 -0.3254 38 1 5.0419 -1.6074 -0.0095 39 1 5.6992 -5.1708 -0.6688 40 1 6.5323 1.7932 2.7612 41 1 8.5105 2.5568 3.2722 42 1 10.7485 3.3983 3.8492 43 1 12.7413 2.0405 3.3633 44 1 12.5084 -0.1699 2.3088 45 1 10.2787 -1.0345 1.7335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792526516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:36 Heat of formation + Delta-G solvation = 36.334843 kcal Electronic energy + Delta-G solvation = -27939.351690 eV Core-core repulsion = 24117.666994 eV Total energy + Delta-G solvation = -3821.684696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.97497 -40.92970 -39.96513 -37.57246 -35.98691 -34.92672 -34.30337 -33.86242 -31.87114 -30.47231 -29.39358 -28.11932 -27.78897 -25.46427 -24.73902 -24.63185 -23.23280 -22.74762 -21.16759 -20.17885 -18.97130 -18.86047 -18.41498 -18.00939 -17.33227 -17.00952 -16.47429 -16.28506 -16.04271 -15.75779 -15.51607 -14.97862 -14.68934 -14.49481 -14.34129 -14.28192 -14.19655 -13.88740 -13.79587 -13.54759 -13.14406 -12.87472 -12.80461 -12.64941 -12.44063 -12.34256 -12.19493 -11.97742 -11.90637 -11.82693 -11.65174 -11.58109 -11.43549 -11.23984 -11.18534 -10.54625 -9.89452 -9.54558 -9.31890 -8.17153 -6.26661 -0.32699 0.38256 0.47417 1.17365 1.34973 1.36846 1.45658 1.91606 2.10789 2.18842 2.40589 2.90506 3.06063 3.16353 3.39949 3.82872 3.89983 3.99178 4.06593 4.07127 4.13873 4.16837 4.21032 4.35490 4.53787 4.57798 4.62008 4.68456 4.75866 4.82191 4.84262 4.86621 4.97928 5.00340 5.04039 5.13635 5.17733 5.23447 5.39468 5.42918 5.50951 5.52449 5.58279 5.63415 5.77029 6.01872 6.07354 6.37647 6.75879 7.02819 7.27683 7.40782 8.90560 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.004280 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.512421 B = 6540.792278 C = 8856.243432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.126 4.126 4 C 0.119 3.881 5 N -0.582 5.582 6 C 0.254 3.746 7 C -0.520 4.520 8 H 0.038 0.962 9 C 0.033 3.967 10 N -0.915 5.915 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.281 1.281 15 C 0.591 3.409 16 O -0.564 6.564 17 C -0.061 4.061 18 C -0.171 4.171 19 C -0.006 4.006 20 C -0.040 4.040 21 C -0.098 4.098 22 C -0.117 4.117 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.112 4.112 26 O 0.119 5.881 27 N -0.289 5.289 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.020 0.980 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.200 0.800 41 H 0.140 0.860 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.227 13.210 4.547 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.184 4.184 4 C -0.003 4.003 5 N -0.311 5.311 6 C 0.133 3.867 7 C -0.559 4.559 8 H 0.057 0.943 9 C -0.167 4.167 10 N -0.555 5.555 11 Si 0.771 3.229 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.206 1.206 15 C 0.378 3.622 16 O -0.444 6.444 17 C -0.218 4.218 18 C -0.193 4.193 19 C -0.068 4.068 20 C -0.042 4.042 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.130 4.130 26 O 0.038 5.962 27 N 0.015 4.985 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.217 0.783 41 H 0.158 0.842 42 H 0.176 0.824 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.527 12.403 4.090 15.074 hybrid contribution 0.073 -0.692 0.590 0.912 sum 7.601 11.710 4.680 14.724 Atomic orbital electron populations 1.21695 0.92087 1.02450 1.02857 1.21472 0.97809 0.96375 0.97137 1.21663 0.99150 0.95669 1.01886 1.21690 0.78289 1.01085 0.99207 1.48140 1.07137 1.25750 1.50110 1.19225 0.92974 0.83257 0.91205 1.21276 1.40598 0.99931 0.94069 0.94331 1.25415 0.94864 1.00176 0.96286 1.70000 1.42904 1.28090 1.14489 0.85761 0.78197 0.79781 0.79122 1.19582 1.20318 1.20586 1.17045 0.83879 0.82531 0.78776 1.90642 1.74207 1.30599 1.48964 1.23522 0.97351 0.93765 1.07159 1.22680 0.88525 1.02661 1.05426 1.23031 0.96353 0.86684 1.00778 1.17777 0.86498 0.96379 1.03504 1.21377 0.99842 0.93263 0.97119 1.21448 0.91125 1.01332 0.99589 1.21749 1.00283 0.93742 0.96356 1.21411 0.96820 0.97028 0.98587 1.21475 0.92530 0.99871 0.99171 1.84995 1.19930 1.33766 1.57522 1.75063 0.88719 1.20012 1.14674 0.91759 0.91005 0.92142 0.92493 0.91331 0.92605 0.96014 0.90542 0.90376 0.96223 0.94933 0.92585 0.78334 0.84239 0.82352 0.82461 0.83193 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.19 71.98 0.66 -2.59 16 2 C -0.11 -3.51 3.12 -10.79 -0.03 -3.55 16 3 C -0.13 -4.07 7.93 71.98 0.57 -3.50 16 4 C 0.12 4.57 4.92 86.38 0.43 5.00 16 5 N -0.58 -26.69 2.29 -829.01 -1.90 -28.59 16 6 C 0.25 13.30 4.76 85.63 0.41 13.70 16 7 C -0.52 -29.06 7.95 25.60 0.20 -28.86 16 8 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 9 C 0.03 1.84 5.46 84.66 0.46 2.30 16 10 N -0.92 -53.13 13.29 21.45 0.28 -52.84 16 11 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 15 C 0.59 27.12 6.56 86.93 0.57 27.69 16 16 O -0.56 -25.56 15.00 -3.72 -0.06 -25.62 16 17 C -0.06 -2.71 6.76 42.86 0.29 -2.42 16 18 C -0.17 -6.04 10.34 22.82 0.24 -5.80 16 19 C -0.01 -0.21 7.15 24.46 0.17 -0.04 16 20 C -0.04 -1.06 5.87 -20.09 -0.12 -1.18 16 21 C -0.10 -1.96 9.58 22.53 0.22 -1.74 16 22 C -0.12 -1.70 10.03 22.23 0.22 -1.48 16 23 C -0.10 -1.39 10.04 22.33 0.22 -1.16 16 24 C -0.12 -2.04 10.03 22.23 0.22 -1.81 16 25 C -0.11 -2.64 9.73 22.52 0.22 -2.42 16 26 O 0.12 4.98 11.01 67.62 0.74 5.72 16 27 N -0.29 -13.79 7.82 -49.00 -0.38 -14.18 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.81 7.88 -2.39 -0.02 1.79 16 34 H 0.02 0.79 6.85 -2.38 -0.02 0.78 16 35 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 36 H 0.08 2.93 7.34 -2.39 -0.02 2.92 16 37 H 0.02 1.08 8.04 -2.39 -0.02 1.06 16 38 H 0.03 1.85 5.83 -2.38 -0.01 1.84 16 39 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.20 5.69 7.46 -2.91 -0.02 5.67 16 41 H 0.14 2.41 7.15 -2.91 -0.02 2.39 16 42 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.12 3.05 7.96 -2.91 -0.02 3.03 16 Total: -1.00 -68.99 377.34 6.67 -62.32 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.99 Total: 14.32 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.96 Total: -7.84 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -1.99 Total: -95.61 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.69 Total: -19.89 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.99 6.67 -62.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792526516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.656 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds