Wall clock time and date at job start Tue Mar 31 2020 14:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47089 * 2 1 4 4 N 1.30252 * 125.61997 * 90.02103 * 3 2 1 5 5 C 1.34478 * 108.70139 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.16503 * 180.02562 * 5 4 3 7 7 C 1.34333 * 107.66989 * 0.02562 * 5 4 3 8 8 C 1.50702 * 126.44428 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.46827 * 90.00109 * 8 7 5 10 10 C 1.34782 * 119.99878 * 180.27151 * 9 8 7 11 11 O 1.21282 * 119.99405 * 359.72918 * 10 9 8 12 12 C 1.50693 * 119.99914 * 179.72276 * 10 9 8 13 13 C 1.50706 * 109.47015 * 180.02562 * 12 10 9 14 14 C 1.37638 * 120.12767 * 265.00680 * 13 12 10 15 15 C 1.38613 * 120.24927 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50039 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24615 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12805 * 84.72441 * 13 12 10 19 19 C 1.41397 * 120.24370 * 0.02562 * 18 13 12 20 20 H 1.08007 * 119.99600 * 333.89427 * 19 18 13 21 21 C 1.39939 * 120.00128 * 153.88837 * 19 18 13 22 22 N 1.30820 * 120.00325 * 343.72382 * 21 19 18 23 23 Si 1.86802 * 120.00107 * 163.71480 * 21 19 18 24 24 H 1.48500 * 109.46599 * 60.00521 * 23 21 19 25 25 H 1.48499 * 109.47151 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47293 * 300.00934 * 23 21 19 27 27 O 1.33972 * 125.61808 * 270.31014 * 3 2 1 28 28 H 1.08996 * 109.47223 * 300.00017 * 1 2 3 29 29 H 1.09006 * 109.47128 * 60.00278 * 1 2 3 30 30 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46617 * 239.99604 * 2 1 3 32 32 H 1.08994 * 109.47097 * 120.00133 * 2 1 3 33 33 H 1.09003 * 109.47109 * 269.99987 * 6 5 4 34 34 H 1.08999 * 109.46878 * 30.00626 * 6 5 4 35 35 H 1.09006 * 109.46555 * 150.00310 * 6 5 4 36 36 H 1.08998 * 109.46883 * 330.00033 * 8 7 5 37 37 H 1.08997 * 109.46618 * 210.00031 * 8 7 5 38 38 H 0.96999 * 120.00308 * 359.97438 * 9 8 7 39 39 H 1.08996 * 109.47701 * 300.00126 * 12 10 9 40 40 H 1.08996 * 109.47092 * 60.01004 * 12 10 9 41 41 H 1.08001 * 119.87513 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.75049 * 179.97438 * 15 14 13 43 43 H 1.07997 * 119.87641 * 180.02562 * 16 15 14 44 44 H 1.07994 * 120.12117 * 179.97438 * 17 16 15 45 45 H 0.96999 * 120.00801 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2856 2.1359 1.0588 5 6 2.7148 3.3487 0.6675 6 6 3.1175 4.4843 1.5727 7 6 2.7200 3.3656 -0.6757 8 6 3.1276 4.5196 -1.5550 9 7 4.5619 4.4331 -1.8406 10 6 5.1536 5.3688 -2.6094 11 8 4.4976 6.2796 -3.0687 12 6 6.6301 5.2832 -2.8980 13 6 7.0389 6.4406 -3.7724 14 6 7.0976 6.2871 -5.1389 15 6 7.4728 7.3500 -5.9456 16 6 7.7934 8.5782 -5.3874 17 6 7.7427 8.7541 -4.0236 18 6 7.3564 7.6839 -3.1954 19 6 7.2944 7.8549 -1.7932 20 1 6.6360 7.2354 -1.2022 21 6 8.0862 8.8267 -1.1711 22 7 9.0994 9.3523 -1.8103 23 14 7.6962 9.3737 0.5719 24 1 7.7763 8.2065 1.4865 25 1 8.6760 10.4051 0.9979 26 1 6.3261 9.9446 0.6168 27 8 2.2869 2.1584 -1.0891 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2458 5.1012 1.7914 34 1 3.5209 4.0825 2.5021 35 1 3.8770 5.0907 1.0789 36 1 2.9149 5.4586 -1.0439 37 1 2.5680 4.4797 -2.4895 38 1 5.0866 3.7048 -1.4730 39 1 7.1863 5.3217 -1.9615 40 1 6.8463 4.3460 -3.4108 41 1 6.8503 5.3348 -5.5844 42 1 7.5165 7.2205 -7.0169 43 1 8.0840 9.3997 -6.0254 44 1 7.9932 9.7114 -3.5910 45 1 9.6481 10.0262 -1.3793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795192688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:43 Heat of formation + Delta-G solvation = -12.426243 kcal Electronic energy + Delta-G solvation = -27079.075800 eV Core-core repulsion = 23255.276664 eV Total energy + Delta-G solvation = -3823.799135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.58063 -39.27082 -37.35880 -35.41749 -35.20467 -34.01923 -33.60612 -31.83849 -30.99676 -29.44607 -28.67851 -26.88635 -25.77056 -24.88112 -23.49080 -21.76990 -20.93284 -20.76133 -20.59004 -19.37899 -17.29949 -17.08961 -16.94785 -16.20179 -15.75668 -15.47500 -15.29959 -14.81997 -14.51938 -14.40708 -13.74852 -13.68721 -13.55264 -13.42619 -13.23029 -12.96913 -12.95005 -12.59618 -12.44952 -12.26379 -12.11072 -11.72736 -11.58572 -11.55241 -11.16066 -11.07758 -11.02796 -10.97117 -10.71043 -10.67416 -10.39655 -9.47344 -9.42431 -9.35555 -9.14235 -8.86952 -8.74118 -7.29602 -7.27887 -6.71946 -4.33039 1.12205 2.34764 2.41524 2.81656 2.99836 3.07099 3.09843 3.27113 3.29344 3.63416 3.74372 3.94452 4.41473 4.57880 4.67852 4.71178 4.71994 4.88144 5.11466 5.25459 5.34122 5.38767 5.47523 5.54777 5.62342 5.64380 5.70278 5.80770 5.84650 5.92111 6.02314 6.13369 6.17808 6.30105 6.43217 6.52838 6.59085 6.81231 7.10009 7.31335 7.44004 7.52735 7.64838 7.80958 7.94977 8.08319 8.14842 8.33046 8.65875 8.77193 8.93033 9.03154 10.22149 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.003054 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.986454 B = 9165.276150 C =10781.137766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.196 3.804 4 N -0.481 5.481 5 C 0.013 3.987 6 C -0.078 4.078 7 C -0.067 4.067 8 C 0.211 3.789 9 N -0.744 5.744 10 C 0.517 3.483 11 O -0.517 6.517 12 C -0.069 4.069 13 C -0.183 4.183 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.795 5.795 23 Si 0.903 3.097 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.264 1.264 27 O -0.195 6.195 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -14.980 5.951 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.011 4.011 4 N -0.211 5.211 5 C -0.108 4.108 6 C -0.135 4.135 7 C -0.120 4.120 8 C 0.087 3.913 9 N -0.400 5.400 10 C 0.305 3.695 11 O -0.390 6.390 12 C -0.109 4.109 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.421 5.421 23 Si 0.727 3.273 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.188 1.188 27 O -0.082 6.082 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.232 0.768 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.475 -14.331 6.192 19.375 hybrid contribution 0.174 0.156 0.289 0.371 sum -11.301 -14.175 6.480 19.252 Atomic orbital electron populations 1.21788 0.93045 1.02988 1.03033 1.20073 0.96883 0.84207 1.05239 1.26296 0.99429 0.96654 0.78763 1.70386 1.16980 1.03505 1.30249 1.21637 1.02466 0.94610 0.92087 1.20227 1.02026 0.93143 0.98144 1.23185 1.07228 0.86732 0.94884 1.19435 0.83346 0.91068 0.97462 1.46258 1.08109 1.30672 1.54972 1.21332 0.90917 0.80504 0.76710 1.90698 1.65631 1.32773 1.49889 1.20258 0.90293 0.98550 1.01750 1.19042 1.13107 0.93949 0.92341 1.20303 0.99665 0.96724 0.93217 1.20309 1.13670 0.94974 0.96966 1.20682 1.00621 0.95875 0.95347 1.21299 1.05368 0.99461 0.91722 1.17332 0.87572 0.89320 0.93096 1.19427 1.20790 1.16028 0.92376 0.90829 1.25876 0.93388 0.94751 1.00036 1.69807 1.11734 1.22049 1.38494 0.86458 0.79479 0.79159 0.82178 1.19039 1.20365 1.18849 1.84402 1.63759 1.22456 1.37539 0.91746 0.92092 0.90837 0.88809 0.87587 0.90420 0.90365 0.89979 0.88249 0.90005 0.76787 0.88419 0.90519 0.89774 0.89671 0.89585 0.86504 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.03 -0.18 6.56 -27.88 -0.18 -0.36 16 3 C 0.20 2.19 7.60 -12.95 -0.10 2.09 16 4 N -0.48 -6.23 11.29 -7.36 -0.08 -6.31 16 5 C 0.01 0.16 7.11 -82.81 -0.59 -0.42 16 6 C -0.08 -0.85 10.05 36.01 0.36 -0.48 16 7 C -0.07 -0.86 6.75 -35.69 -0.24 -1.10 16 8 C 0.21 2.83 5.83 -5.20 -0.03 2.80 16 9 N -0.74 -10.81 5.55 -61.48 -0.34 -11.15 16 10 C 0.52 9.82 7.44 -10.99 -0.08 9.73 16 11 O -0.52 -12.03 16.03 5.56 0.09 -11.94 16 12 C -0.07 -1.33 5.18 -29.04 -0.15 -1.48 16 13 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 14 C -0.08 -1.87 9.66 -39.66 -0.38 -2.25 16 15 C -0.24 -5.60 10.05 -39.29 -0.39 -6.00 16 16 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 17 C -0.16 -4.25 8.68 -38.87 -0.34 -4.59 16 18 C 0.13 3.43 5.56 -106.83 -0.59 2.84 16 19 C -0.46 -11.86 8.14 -37.74 -0.31 -12.17 16 20 H 0.07 1.84 6.67 -52.48 -0.35 1.49 16 21 C 0.08 1.92 5.16 -17.35 -0.09 1.83 16 22 N -0.80 -20.44 10.95 55.55 0.61 -19.83 16 23 Si 0.90 18.65 29.59 -169.99 -5.03 13.62 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 27 O -0.19 -2.46 10.78 5.35 0.06 -2.40 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.90 7.79 -51.93 -0.40 0.50 16 36 H 0.10 1.34 7.80 -51.93 -0.40 0.93 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.40 4.89 8.46 -40.82 -0.35 4.55 16 39 H 0.10 1.85 7.08 -51.93 -0.37 1.48 16 40 H 0.08 1.24 8.05 -51.93 -0.42 0.83 16 41 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.12 3.20 6.20 -52.49 -0.33 2.88 16 45 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -31.97 383.30 -8.93 -40.91 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.40 Total: 9.22 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.61 Total: -17.90 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.18 Total: -37.29 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.15 Total: -14.34 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.97 -8.93 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795192688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.481 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds