Wall clock time and date at job start Tue Mar 31 2020 14:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47089 * 2 1 4 4 N 1.30252 * 125.61997 * 90.02103 * 3 2 1 5 5 C 1.34478 * 108.70139 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.16503 * 180.02562 * 5 4 3 7 7 C 1.34333 * 107.66989 * 0.02562 * 5 4 3 8 8 C 1.50702 * 126.44428 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.46827 * 90.00109 * 8 7 5 10 10 C 1.34782 * 119.99878 * 180.27151 * 9 8 7 11 11 O 1.21282 * 119.99405 * 359.72918 * 10 9 8 12 12 C 1.50693 * 119.99914 * 179.72276 * 10 9 8 13 13 C 1.50706 * 109.47015 * 180.02562 * 12 10 9 14 14 C 1.37638 * 120.12767 * 265.00680 * 13 12 10 15 15 C 1.38613 * 120.24927 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50039 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24615 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12805 * 84.72441 * 13 12 10 19 19 C 1.41397 * 120.24370 * 0.02562 * 18 13 12 20 20 H 1.08007 * 119.99600 * 333.89427 * 19 18 13 21 21 C 1.39939 * 120.00128 * 153.88837 * 19 18 13 22 22 N 1.30820 * 120.00325 * 343.72382 * 21 19 18 23 23 Si 1.86802 * 120.00107 * 163.71480 * 21 19 18 24 24 H 1.48500 * 109.46599 * 60.00521 * 23 21 19 25 25 H 1.48499 * 109.47151 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47293 * 300.00934 * 23 21 19 27 27 O 1.33972 * 125.61808 * 270.31014 * 3 2 1 28 28 H 1.08996 * 109.47223 * 300.00017 * 1 2 3 29 29 H 1.09006 * 109.47128 * 60.00278 * 1 2 3 30 30 H 1.09005 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46617 * 239.99604 * 2 1 3 32 32 H 1.08994 * 109.47097 * 120.00133 * 2 1 3 33 33 H 1.09003 * 109.47109 * 269.99987 * 6 5 4 34 34 H 1.08999 * 109.46878 * 30.00626 * 6 5 4 35 35 H 1.09006 * 109.46555 * 150.00310 * 6 5 4 36 36 H 1.08998 * 109.46883 * 330.00033 * 8 7 5 37 37 H 1.08997 * 109.46618 * 210.00031 * 8 7 5 38 38 H 0.96999 * 120.00308 * 359.97438 * 9 8 7 39 39 H 1.08996 * 109.47701 * 300.00126 * 12 10 9 40 40 H 1.08996 * 109.47092 * 60.01004 * 12 10 9 41 41 H 1.08001 * 119.87513 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.75049 * 179.97438 * 15 14 13 43 43 H 1.07997 * 119.87641 * 180.02562 * 16 15 14 44 44 H 1.07994 * 120.12117 * 179.97438 * 17 16 15 45 45 H 0.96999 * 120.00801 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2856 2.1359 1.0588 5 6 2.7148 3.3487 0.6675 6 6 3.1175 4.4843 1.5727 7 6 2.7200 3.3656 -0.6757 8 6 3.1276 4.5196 -1.5550 9 7 4.5619 4.4331 -1.8406 10 6 5.1536 5.3688 -2.6094 11 8 4.4976 6.2796 -3.0687 12 6 6.6301 5.2832 -2.8980 13 6 7.0389 6.4406 -3.7724 14 6 7.0976 6.2871 -5.1389 15 6 7.4728 7.3500 -5.9456 16 6 7.7934 8.5782 -5.3874 17 6 7.7427 8.7541 -4.0236 18 6 7.3564 7.6839 -3.1954 19 6 7.2944 7.8549 -1.7932 20 1 6.6360 7.2354 -1.2022 21 6 8.0862 8.8267 -1.1711 22 7 9.0994 9.3523 -1.8103 23 14 7.6962 9.3737 0.5719 24 1 7.7763 8.2065 1.4865 25 1 8.6760 10.4051 0.9979 26 1 6.3261 9.9446 0.6168 27 8 2.2869 2.1584 -1.0891 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2458 5.1012 1.7914 34 1 3.5209 4.0825 2.5021 35 1 3.8770 5.0907 1.0789 36 1 2.9149 5.4586 -1.0439 37 1 2.5680 4.4797 -2.4895 38 1 5.0866 3.7048 -1.4730 39 1 7.1863 5.3217 -1.9615 40 1 6.8463 4.3460 -3.4108 41 1 6.8503 5.3348 -5.5844 42 1 7.5165 7.2205 -7.0169 43 1 8.0840 9.3997 -6.0254 44 1 7.9932 9.7114 -3.5910 45 1 9.6481 10.0262 -1.3793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795192688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:42 Heat of formation + Delta-G solvation = -33.032873 kcal Electronic energy + Delta-G solvation = -27079.969370 eV Core-core repulsion = 23255.276664 eV Total energy + Delta-G solvation = -3824.692706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.50596 -40.80351 -39.13378 -36.46218 -36.20932 -35.47933 -34.88334 -33.48884 -31.99710 -31.32266 -29.84445 -28.31402 -27.04335 -26.39798 -24.36004 -22.81327 -22.64652 -22.20485 -21.60631 -21.00815 -19.06689 -18.31906 -18.06720 -17.33147 -17.26665 -16.88598 -16.52525 -16.14172 -15.88568 -15.37322 -15.30498 -15.17610 -14.75256 -14.40104 -14.33224 -14.27690 -14.24205 -13.68609 -13.58983 -13.49187 -13.34784 -13.09612 -12.89099 -12.73570 -12.64614 -12.61672 -12.46740 -12.10649 -12.08630 -11.96613 -11.66116 -11.31026 -11.20000 -11.00517 -10.93535 -10.18195 -9.74729 -9.21044 -9.14714 -8.57247 -6.27242 0.17854 1.01489 1.14977 1.38107 1.45119 1.48156 1.51415 1.56610 1.78469 2.21747 2.41135 2.81140 2.89947 3.49818 3.71446 3.77213 3.99028 4.10360 4.18919 4.22023 4.28519 4.39643 4.43734 4.57448 4.62303 4.62729 4.65437 4.72166 4.72879 4.82097 4.89158 4.94566 5.03380 5.04146 5.07450 5.21902 5.24660 5.32553 5.35328 5.38952 5.56635 5.79219 6.05360 6.18356 6.23230 6.43722 6.53406 6.61842 6.75875 7.01201 7.13229 7.34209 8.38968 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.003054 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.986454 B = 9165.276150 C =10781.137766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.027 4.027 3 C 0.204 3.796 4 N -0.507 5.507 5 C 0.011 3.989 6 C -0.078 4.078 7 C -0.081 4.081 8 C 0.216 3.784 9 N -0.723 5.723 10 C 0.523 3.477 11 O -0.566 6.566 12 C -0.068 4.068 13 C -0.189 4.189 14 C -0.091 4.091 15 C -0.244 4.244 16 C -0.117 4.117 17 C -0.194 4.194 18 C 0.096 3.904 19 C -0.481 4.481 20 H 0.075 0.925 21 C 0.035 3.965 22 N -0.827 5.827 23 Si 0.970 3.030 24 H -0.251 1.251 25 H -0.270 1.270 26 H -0.268 1.268 27 O -0.204 6.204 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.412 0.588 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.888 -17.397 6.695 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.003 4.003 4 N -0.237 5.237 5 C -0.110 4.110 6 C -0.135 4.135 7 C -0.133 4.133 8 C 0.093 3.907 9 N -0.379 5.379 10 C 0.312 3.688 11 O -0.444 6.444 12 C -0.108 4.108 13 C -0.191 4.191 14 C -0.109 4.109 15 C -0.263 4.263 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.094 3.906 19 C -0.510 4.510 20 H 0.093 0.907 21 C -0.179 4.179 22 N -0.454 5.454 23 Si 0.791 3.209 24 H -0.175 1.175 25 H -0.195 1.195 26 H -0.193 1.193 27 O -0.092 6.092 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.248 0.752 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.240 -16.798 6.957 21.917 hybrid contribution 0.366 0.773 -0.009 0.855 sum -11.874 -16.024 6.948 21.120 Atomic orbital electron populations 1.21777 0.92216 1.04387 1.02078 1.20406 0.97416 0.81754 1.06938 1.27294 0.97321 0.97645 0.77995 1.70433 1.18380 1.03871 1.31065 1.21937 1.01731 0.95013 0.92317 1.20278 1.02400 0.92768 0.98043 1.22911 1.08813 0.86936 0.94672 1.19350 0.82243 0.91623 0.97501 1.45989 1.08841 1.29752 1.53273 1.21139 0.90605 0.80395 0.76701 1.90684 1.66543 1.34905 1.52239 1.20271 0.90579 0.98387 1.01516 1.19524 1.11525 0.94432 0.93571 1.20742 0.98957 0.98114 0.93110 1.20717 1.12498 0.94476 0.98645 1.20950 1.00477 0.97287 0.94840 1.21317 1.07889 0.99170 0.93011 1.17739 0.88571 0.90493 0.93800 1.19608 1.21533 1.17349 0.92547 0.90723 1.26683 0.92808 0.94355 1.04048 1.69877 1.12567 1.22603 1.40304 0.85431 0.78873 0.79185 0.77389 1.17521 1.19460 1.19315 1.84403 1.64064 1.22497 1.38194 0.92892 0.92836 0.88270 0.86783 0.86147 0.89365 0.89758 0.90309 0.88367 0.90324 0.75195 0.88215 0.86957 0.86577 0.86779 0.87776 0.88514 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.03 -0.30 6.56 29.85 0.20 -0.10 16 3 C 0.20 4.22 7.60 88.34 0.67 4.89 16 4 N -0.51 -12.42 11.29 -291.98 -3.30 -15.72 16 5 C 0.01 0.26 7.11 41.26 0.29 0.55 16 6 C -0.08 -1.59 10.05 71.24 0.72 -0.88 16 7 C -0.08 -1.98 6.75 24.79 0.17 -1.81 16 8 C 0.22 5.67 5.83 85.63 0.50 6.17 16 9 N -0.72 -20.11 5.55 -466.80 -2.59 -22.70 16 10 C 0.52 19.45 7.44 87.65 0.65 20.10 16 11 O -0.57 -26.52 16.03 -3.04 -0.05 -26.57 16 12 C -0.07 -2.54 5.18 29.10 0.15 -2.39 16 13 C -0.19 -8.99 4.43 -19.40 -0.09 -9.07 16 14 C -0.09 -4.09 9.66 22.22 0.21 -3.87 16 15 C -0.24 -11.15 10.05 22.46 0.23 -10.92 16 16 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 17 C -0.19 -10.76 8.68 22.73 0.20 -10.57 16 18 C 0.10 5.24 5.56 -21.29 -0.12 5.12 16 19 C -0.48 -25.56 8.14 23.46 0.19 -25.37 16 20 H 0.07 3.80 6.67 -2.91 -0.02 3.78 16 21 C 0.04 1.80 5.16 85.26 0.44 2.24 16 22 N -0.83 -43.79 10.95 21.82 0.24 -43.55 16 23 Si 0.97 38.53 29.59 68.60 2.03 40.56 16 24 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 O -0.20 -4.85 10.78 -3.79 -0.04 -4.89 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.65 7.79 -2.38 -0.02 1.63 16 36 H 0.10 2.63 7.80 -2.39 -0.02 2.61 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.41 9.33 8.46 -92.71 -0.78 8.55 16 39 H 0.10 3.68 7.08 -2.39 -0.02 3.67 16 40 H 0.11 3.32 8.05 -2.39 -0.02 3.31 16 41 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.10 5.61 6.20 -2.91 -0.02 5.59 16 45 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 Total: -1.00 -70.92 383.30 1.87 -69.06 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.23 Total: 35.96 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 5.34 Total: -32.15 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -5.65 Total: -81.96 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.09 Total: -31.46 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -70.92 1.87 -69.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795192688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.022 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds