Wall clock time and date at job start Tue Mar 31 2020 15:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47147 * 2 1 4 4 C 1.52999 * 109.47151 * 239.99947 * 2 1 3 5 5 C 1.50700 * 109.47186 * 59.99995 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47219 * 59.99487 * 9 7 5 11 11 H 1.48494 * 109.47280 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47330 * 299.99900 * 9 7 5 13 13 C 1.52998 * 109.47315 * 120.00013 * 2 1 3 14 14 O 1.45206 * 109.46801 * 299.99983 * 13 2 1 15 15 C 1.34754 * 116.99613 * 179.97438 * 14 13 2 16 16 O 1.21495 * 120.00280 * 359.97438 * 15 14 13 17 17 C 1.47464 * 119.99536 * 180.02562 * 15 14 13 18 18 C 1.39699 * 120.20027 * 5.95455 * 17 15 14 19 19 C 1.37830 * 119.91402 * 179.97438 * 18 17 15 20 20 C 1.38536 * 120.31340 * 0.02562 * 19 18 17 21 21 C 1.38086 * 120.40145 * 359.71237 * 20 19 18 22 22 C 1.38744 * 120.08016 * 0.56000 * 21 20 19 23 23 N 1.39672 * 120.15938 * 179.71929 * 22 21 20 24 24 C 1.35863 * 126.10244 * 57.61849 * 23 22 21 25 25 C 1.35275 * 107.61164 * 179.97438 * 24 23 22 26 26 C 1.39965 * 107.97217 * 0.02562 * 25 24 23 27 27 N 1.30819 * 108.36738 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47039 * 300.00072 * 1 2 3 29 29 H 1.09001 * 109.46964 * 60.00087 * 1 2 3 30 30 H 1.08995 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46669 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46676 * 300.00108 * 3 2 1 33 33 H 1.08993 * 109.47104 * 60.00196 * 3 2 1 34 34 H 1.08998 * 109.46958 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47313 * 300.00213 * 4 2 1 36 36 H 0.97000 * 119.99517 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47623 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47405 * 59.99553 * 13 2 1 39 39 H 1.07996 * 120.04300 * 359.96541 * 18 17 15 40 40 H 1.07992 * 119.84286 * 179.97438 * 19 18 17 41 41 H 1.08000 * 119.79525 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.95620 * 180.28523 * 21 20 19 43 43 H 1.08000 * 126.19572 * 359.74110 * 24 23 22 44 44 H 1.08002 * 126.01540 * 179.97438 * 25 24 23 45 45 H 1.08001 * 125.81941 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2483 0.3987 -5.2572 10 1 1.7442 1.7985 -5.2572 11 1 1.7431 -0.3013 -6.4696 12 1 -0.2368 0.3999 -5.2571 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0367 2.4348 15 6 1.9177 -0.5491 3.6275 16 8 2.6179 -1.5408 3.6755 17 6 1.4627 0.0934 4.8744 18 6 0.5575 1.1565 4.8274 19 6 0.1358 1.7523 5.9965 20 6 0.6057 1.3024 7.2197 21 6 1.4965 0.2491 7.2815 22 6 1.9363 -0.3591 6.1146 23 7 2.8418 -1.4208 6.1750 24 6 2.6610 -2.5902 6.8425 25 6 3.7660 -3.3464 6.6501 26 6 4.6502 -2.6215 5.8427 27 7 4.0986 -1.4701 5.5578 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2493 36 1 2.8608 -1.8829 -4.7336 37 1 3.1300 -0.7209 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 0.1889 1.5110 3.8763 40 1 -0.5636 2.5742 5.9589 41 1 0.2699 1.7757 8.1305 42 1 1.8546 -0.0988 8.2392 43 1 1.7938 -2.8648 7.4247 44 1 3.9364 -4.3352 7.0498 45 1 5.6223 -2.9558 5.5114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798876147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:41 Heat of formation + Delta-G solvation = 25.850018 kcal Electronic energy + Delta-G solvation = -27663.952760 eV Core-core repulsion = 23841.813408 eV Total energy + Delta-G solvation = -3822.139352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.54411 -40.17610 -38.95938 -37.05033 -35.33531 -33.61741 -32.36617 -31.83065 -30.18202 -29.26929 -27.31831 -26.48136 -26.40398 -24.51342 -23.58371 -22.92418 -21.43564 -20.94035 -20.38668 -18.53772 -18.10829 -17.65121 -16.57328 -16.19390 -16.04601 -15.72214 -15.48408 -14.86499 -14.53220 -14.47082 -14.09467 -13.81897 -13.61908 -13.49933 -13.11206 -12.98265 -12.77244 -12.55018 -12.25148 -12.14953 -12.04093 -11.83345 -11.25013 -10.95079 -10.85048 -10.75556 -10.58878 -10.45489 -10.26994 -10.24602 -10.18247 -9.89930 -9.72167 -9.47875 -9.21175 -9.18689 -8.94747 -8.52128 -8.35685 -5.99923 -4.01241 0.28080 0.71964 1.90325 2.34048 2.55645 2.84377 2.88152 3.33082 3.38050 3.39231 3.39897 4.33645 4.43926 4.48778 4.56379 4.66085 4.78597 4.92128 4.95121 5.15044 5.35546 5.41740 5.50117 5.52935 5.54276 5.63411 5.75681 5.82106 5.83975 5.91641 5.93511 6.08827 6.21023 6.24538 6.38646 6.51153 6.61927 6.64718 6.71254 6.83221 7.06495 7.11288 7.12253 7.14413 7.61832 7.66303 7.73823 7.97634 8.00856 8.40340 9.02849 9.61666 11.11763 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002841 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.961082 B = 9854.271608 C =11099.338570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.084 3.916 14 O -0.348 6.348 15 C 0.494 3.506 16 O -0.481 6.481 17 C -0.108 4.108 18 C -0.050 4.050 19 C -0.127 4.127 20 C -0.076 4.076 21 C -0.130 4.130 22 C 0.204 3.796 23 N -0.333 5.333 24 C 0.053 3.947 25 C -0.258 4.258 26 C 0.047 3.953 27 N -0.246 5.246 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.172 0.828 44 H 0.149 0.851 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 3.313 26.126 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.011 3.989 14 O -0.264 6.264 15 C 0.336 3.664 16 O -0.368 6.368 17 C -0.111 4.111 18 C -0.069 4.069 19 C -0.145 4.145 20 C -0.094 4.094 21 C -0.150 4.150 22 C 0.112 3.888 23 N -0.112 5.112 24 C -0.088 4.088 25 C -0.287 4.287 26 C -0.142 4.142 27 N -0.064 5.064 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.189 0.811 44 H 0.167 0.833 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.710 4.042 25.329 25.917 hybrid contribution -0.245 -0.696 -0.624 0.966 sum -3.954 3.347 24.705 25.242 Atomic orbital electron populations 1.21708 0.94866 1.00895 1.00738 1.20816 0.96091 0.96231 0.92681 1.21708 1.00098 0.95692 1.00731 1.19112 0.96387 0.95248 0.89388 1.21111 1.31290 1.12139 0.90302 0.92129 1.25016 0.95293 0.95085 0.99109 1.69961 1.36888 1.23035 1.23600 0.86673 0.79156 0.79777 0.82492 1.20255 1.21379 1.20265 1.23486 0.98976 0.95761 0.80700 1.86509 1.69617 1.55811 1.14492 1.20782 0.78373 0.82755 0.84451 1.90901 1.33544 1.24473 1.87882 1.19349 1.01265 1.00055 0.90411 1.21561 0.93078 0.92014 1.00197 1.21306 1.00701 1.00703 0.91827 1.21270 0.94813 0.94662 0.98688 1.21088 1.00062 0.96992 0.96880 1.17231 0.90199 0.88700 0.92657 1.45576 1.13603 1.12129 1.39853 1.22644 1.00654 0.86691 0.98843 1.21494 0.95493 1.02733 1.08998 1.23937 1.00524 0.92109 0.97616 1.77540 0.91234 1.21802 1.15781 0.94314 0.91542 0.93812 0.93751 0.91570 0.94272 0.96356 0.96405 0.92951 0.91609 0.91784 0.83233 0.84350 0.84396 0.84479 0.81119 0.83308 0.79931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.08 37.16 0.30 -2.09 16 2 C -0.06 -1.20 0.61 -154.51 -0.09 -1.29 16 3 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 5 C -0.51 -13.88 7.65 -34.44 -0.26 -14.14 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.08 1.64 4.33 37.16 0.16 1.80 16 14 O -0.35 -6.10 8.15 -40.64 -0.33 -6.43 16 15 C 0.49 8.53 7.84 34.49 0.27 8.80 16 16 O -0.48 -9.54 12.99 -19.26 -0.25 -9.79 16 17 C -0.11 -1.47 5.89 -104.83 -0.62 -2.08 16 18 C -0.05 -0.51 9.61 -39.19 -0.38 -0.89 16 19 C -0.13 -0.92 10.02 -39.62 -0.40 -1.32 16 20 C -0.08 -0.49 10.03 -39.53 -0.40 -0.89 16 21 C -0.13 -1.11 9.78 -39.45 -0.39 -1.50 16 22 C 0.20 2.55 6.14 -83.34 -0.51 2.04 16 23 N -0.33 -4.65 2.59 -10.36 -0.03 -4.67 16 24 C 0.05 0.60 11.33 -16.82 -0.19 0.41 16 25 C -0.26 -2.89 10.80 -39.99 -0.43 -3.32 16 26 C 0.05 0.62 12.02 -17.34 -0.21 0.41 16 27 N -0.25 -3.98 10.03 30.64 0.31 -3.67 16 28 H 0.04 0.64 7.68 -51.93 -0.40 0.25 16 29 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 33 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.15 1.47 7.62 -52.49 -0.40 1.07 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -34.38 377.00 -8.35 -42.73 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.39 Total: -0.31 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -3.05 Total: -13.91 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 1.02 Total: -34.41 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.58 Total: -16.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.38 -8.35 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.575 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds