Wall clock time and date at job start Tue Mar 31 2020 15:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47147 * 2 1 4 4 C 1.52999 * 109.47151 * 239.99947 * 2 1 3 5 5 C 1.50700 * 109.47186 * 59.99995 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47219 * 59.99487 * 9 7 5 11 11 H 1.48494 * 109.47280 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47330 * 299.99900 * 9 7 5 13 13 C 1.52998 * 109.47315 * 120.00013 * 2 1 3 14 14 O 1.45206 * 109.46801 * 299.99983 * 13 2 1 15 15 C 1.34754 * 116.99613 * 179.97438 * 14 13 2 16 16 O 1.21495 * 120.00280 * 359.97438 * 15 14 13 17 17 C 1.47464 * 119.99536 * 180.02562 * 15 14 13 18 18 C 1.39699 * 120.20027 * 5.95455 * 17 15 14 19 19 C 1.37830 * 119.91402 * 179.97438 * 18 17 15 20 20 C 1.38536 * 120.31340 * 0.02562 * 19 18 17 21 21 C 1.38086 * 120.40145 * 359.71237 * 20 19 18 22 22 C 1.38744 * 120.08016 * 0.56000 * 21 20 19 23 23 N 1.39672 * 120.15938 * 179.71929 * 22 21 20 24 24 C 1.35863 * 126.10244 * 57.61849 * 23 22 21 25 25 C 1.35275 * 107.61164 * 179.97438 * 24 23 22 26 26 C 1.39965 * 107.97217 * 0.02562 * 25 24 23 27 27 N 1.30819 * 108.36738 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47039 * 300.00072 * 1 2 3 29 29 H 1.09001 * 109.46964 * 60.00087 * 1 2 3 30 30 H 1.08995 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46669 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46676 * 300.00108 * 3 2 1 33 33 H 1.08993 * 109.47104 * 60.00196 * 3 2 1 34 34 H 1.08998 * 109.46958 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47313 * 300.00213 * 4 2 1 36 36 H 0.97000 * 119.99517 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47623 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47405 * 59.99553 * 13 2 1 39 39 H 1.07996 * 120.04300 * 359.96541 * 18 17 15 40 40 H 1.07992 * 119.84286 * 179.97438 * 19 18 17 41 41 H 1.08000 * 119.79525 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.95620 * 180.28523 * 21 20 19 43 43 H 1.08000 * 126.19572 * 359.74110 * 24 23 22 44 44 H 1.08002 * 126.01540 * 179.97438 * 25 24 23 45 45 H 1.08001 * 125.81941 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2483 0.3987 -5.2572 10 1 1.7442 1.7985 -5.2572 11 1 1.7431 -0.3013 -6.4696 12 1 -0.2368 0.3999 -5.2571 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0367 2.4348 15 6 1.9177 -0.5491 3.6275 16 8 2.6179 -1.5408 3.6755 17 6 1.4627 0.0934 4.8744 18 6 0.5575 1.1565 4.8274 19 6 0.1358 1.7523 5.9965 20 6 0.6057 1.3024 7.2197 21 6 1.4965 0.2491 7.2815 22 6 1.9363 -0.3591 6.1146 23 7 2.8418 -1.4208 6.1750 24 6 2.6610 -2.5902 6.8425 25 6 3.7660 -3.3464 6.6501 26 6 4.6502 -2.6215 5.8427 27 7 4.0986 -1.4701 5.5578 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2493 36 1 2.8608 -1.8829 -4.7336 37 1 3.1300 -0.7209 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 0.1889 1.5110 3.8763 40 1 -0.5636 2.5742 5.9589 41 1 0.2699 1.7757 8.1305 42 1 1.8546 -0.0988 8.2392 43 1 1.7938 -2.8648 7.4247 44 1 3.9364 -4.3352 7.0498 45 1 5.6223 -2.9558 5.5114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798876147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:39 Heat of formation + Delta-G solvation = 7.627421 kcal Electronic energy + Delta-G solvation = -27664.742951 eV Core-core repulsion = 23841.813408 eV Total energy + Delta-G solvation = -3822.929543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -42.46207 -41.41910 -39.85996 -38.62957 -36.89621 -34.48777 -34.39571 -32.66314 -31.07919 -30.08252 -29.31941 -28.05158 -28.00591 -25.73699 -24.69835 -24.33241 -22.57527 -21.79383 -21.35329 -20.00953 -19.27228 -18.75403 -18.38001 -17.63786 -17.48788 -16.68194 -16.46960 -16.25147 -15.77188 -15.46797 -15.26903 -15.04346 -14.88355 -14.72814 -14.50145 -14.15169 -14.04954 -13.84193 -13.69776 -13.49943 -13.05444 -12.96966 -12.78294 -12.67744 -12.47283 -12.35913 -12.27591 -12.03041 -11.89995 -11.68735 -11.61610 -11.42782 -11.08412 -10.95245 -10.76328 -10.54440 -10.21643 -10.04292 -9.37578 -8.17561 -6.26338 -0.56279 0.03963 1.04104 1.40691 1.44221 1.44345 1.49065 1.51792 1.63035 1.96249 2.42743 2.58468 3.16713 3.48653 3.62930 3.85648 3.87036 3.87610 3.94760 4.07561 4.15080 4.23788 4.25582 4.30692 4.47710 4.52704 4.68484 4.69078 4.80419 4.81985 4.97464 5.01627 5.06767 5.08187 5.12145 5.18269 5.30752 5.37452 5.38322 5.40734 5.46025 5.48957 5.63510 5.69630 5.76478 5.83875 6.24344 6.26062 6.66190 6.73310 6.87114 7.41536 8.95246 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002841 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.961082 B = 9854.271608 C =11099.338570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.118 4.118 4 C 0.042 3.958 5 C -0.517 4.517 6 H 0.074 0.926 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.963 3.037 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.264 1.264 13 C 0.097 3.903 14 O -0.341 6.341 15 C 0.487 3.513 16 O -0.517 6.517 17 C -0.144 4.144 18 C -0.054 4.054 19 C -0.115 4.115 20 C -0.053 4.053 21 C -0.124 4.124 22 C 0.176 3.824 23 N -0.342 5.342 24 C 0.051 3.949 25 C -0.266 4.266 26 C 0.031 3.969 27 N -0.305 5.305 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.060 0.940 33 H 0.067 0.933 34 H -0.015 1.015 35 H -0.013 1.013 36 H 0.261 0.739 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.184 0.816 42 H 0.159 0.841 43 H 0.208 0.792 44 H 0.176 0.824 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 5.819 28.742 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.175 4.175 4 C 0.005 3.995 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.788 3.212 10 H -0.190 1.190 11 H -0.215 1.215 12 H -0.189 1.189 13 C 0.023 3.977 14 O -0.257 6.257 15 C 0.332 3.668 16 O -0.406 6.406 17 C -0.147 4.147 18 C -0.073 4.073 19 C -0.132 4.132 20 C -0.071 4.071 21 C -0.144 4.144 22 C 0.085 3.915 23 N -0.120 5.120 24 C -0.090 4.090 25 C -0.294 4.294 26 C -0.157 4.157 27 N -0.123 5.123 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.168 0.832 40 H 0.194 0.806 41 H 0.201 0.799 42 H 0.177 0.823 43 H 0.225 0.775 44 H 0.194 0.806 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.435 6.571 27.966 29.440 hybrid contribution 0.578 -1.463 -1.276 2.025 sum -5.858 5.108 26.690 27.799 Atomic orbital electron populations 1.21629 0.93107 1.00840 1.01845 1.20633 0.97391 0.96519 0.90791 1.21632 0.99451 0.94613 1.01778 1.18963 0.94264 0.94257 0.92046 1.21498 1.30844 1.12299 0.90798 0.90756 1.25988 0.95498 0.95830 1.02829 1.70124 1.38584 1.24953 1.24343 0.85525 0.79059 0.78719 0.77924 1.19045 1.21500 1.18907 1.23049 0.97709 0.95179 0.81746 1.86487 1.69548 1.55402 1.14279 1.21658 0.77565 0.82497 0.85078 1.90880 1.35319 1.26222 1.88169 1.19326 1.04221 1.02407 0.88714 1.21708 0.92496 0.91268 1.01838 1.21744 1.00143 1.00620 0.90738 1.21838 0.92293 0.92776 1.00161 1.21426 0.99842 0.96924 0.96226 1.17722 0.90784 0.89434 0.93591 1.45768 1.13178 1.13289 1.39801 1.23329 1.01650 0.85765 0.98245 1.21877 0.95105 1.03792 1.08672 1.24386 1.01518 0.92020 0.97739 1.77427 0.93229 1.23628 1.18010 0.91288 0.92151 0.94520 0.94797 0.92104 0.91426 0.99641 0.99456 0.93019 0.93492 0.93118 0.83158 0.80648 0.79875 0.82322 0.77534 0.80627 0.78590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.08 71.98 0.58 -3.84 16 2 C -0.05 -2.26 0.61 -52.18 -0.03 -2.29 16 3 C -0.12 -4.54 8.08 71.98 0.58 -3.96 16 4 C 0.04 2.25 4.04 29.85 0.12 2.37 16 5 C -0.52 -28.62 7.65 25.60 0.20 -28.42 16 6 H 0.07 3.85 5.68 -2.91 -0.02 3.83 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 13 C 0.10 4.01 4.33 71.98 0.31 4.32 16 14 O -0.34 -12.24 8.15 -56.65 -0.46 -12.70 16 15 C 0.49 17.54 7.84 70.25 0.55 18.09 16 16 O -0.52 -21.89 12.99 19.85 0.26 -21.64 16 17 C -0.14 -3.87 5.89 -20.00 -0.12 -3.99 16 18 C -0.05 -1.00 9.61 22.53 0.22 -0.79 16 19 C -0.11 -1.13 10.02 22.24 0.22 -0.90 16 20 C -0.05 -0.41 10.03 22.30 0.22 -0.18 16 21 C -0.12 -1.71 9.78 22.35 0.22 -1.49 16 22 C 0.18 4.24 6.14 38.50 0.24 4.48 16 23 N -0.34 -9.61 2.59 -186.71 -0.48 -10.09 16 24 C 0.05 1.11 11.33 83.39 0.94 2.06 16 25 C -0.27 -5.90 10.80 22.00 0.24 -5.66 16 26 C 0.03 0.86 12.02 85.26 1.02 1.89 16 27 N -0.30 -10.38 10.03 -56.97 -0.57 -10.96 16 28 H 0.07 2.18 7.68 -2.39 -0.02 2.16 16 29 H 0.06 2.35 6.62 -2.39 -0.02 2.33 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 2.40 6.62 -2.39 -0.02 2.39 16 33 H 0.07 2.21 7.68 -2.39 -0.02 2.19 16 34 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.15 2.64 7.62 -2.91 -0.02 2.62 16 40 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 41 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.21 2.64 8.06 -2.91 -0.02 2.61 16 44 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.20 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -80.77 377.00 8.02 -72.75 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.99 Total: 12.40 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.98 Total: -18.12 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -0.77 Total: -78.96 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.20 Total: -34.33 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -80.77 8.02 -72.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.379 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds