Wall clock time and date at job start Tue Mar 31 2020 15:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47613 * 2 1 4 4 C 1.53008 * 109.46915 * 240.00119 * 2 1 3 5 5 C 1.50697 * 109.46907 * 60.00461 * 4 2 1 6 6 H 1.08001 * 120.00405 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00159 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00074 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47013 * 90.00160 * 9 7 5 11 11 H 1.48497 * 109.47358 * 210.00342 * 9 7 5 12 12 H 1.48501 * 109.46962 * 330.00522 * 9 7 5 13 13 C 1.52999 * 109.47224 * 120.00314 * 2 1 3 14 14 O 1.45196 * 109.47119 * 296.31668 * 13 2 1 15 15 C 1.34833 * 117.00230 * 184.60386 * 14 13 2 16 16 O 1.21562 * 119.99365 * 5.35218 * 15 14 13 17 17 C 1.46907 * 120.00156 * 185.35660 * 15 14 13 18 18 C 1.38559 * 126.91055 * 354.27726 * 17 15 14 19 19 C 1.39651 * 105.36119 * 180.29618 * 18 17 15 20 20 N 1.30933 * 107.92518 * 359.57310 * 19 18 17 21 21 N 1.28435 * 110.96579 * 0.45134 * 20 19 18 22 22 C 1.40019 * 125.21549 * 179.75478 * 21 20 19 23 23 C 1.38878 * 120.07286 * 135.25778 * 22 21 20 24 24 C 1.38106 * 119.92802 * 179.74190 * 23 22 21 25 25 C 1.38291 * 120.07092 * 0.53574 * 24 23 22 26 26 C 1.38290 * 120.14126 * 359.74019 * 25 24 23 27 27 C 1.38113 * 120.07086 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47283 * 300.00103 * 1 2 3 29 29 H 1.09002 * 109.47151 * 59.99731 * 1 2 3 30 30 H 1.09002 * 109.47867 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47750 * 185.10711 * 3 2 1 32 32 H 1.08997 * 109.47355 * 305.11539 * 3 2 1 33 33 H 1.09007 * 109.46978 * 65.10841 * 3 2 1 34 34 H 1.09000 * 109.46883 * 180.02562 * 4 2 1 35 35 H 1.08997 * 109.46896 * 299.99817 * 4 2 1 36 36 H 0.97000 * 119.99594 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47290 * 176.31031 * 13 2 1 38 38 H 1.09006 * 109.47195 * 56.31489 * 13 2 1 39 39 H 1.07997 * 127.32465 * 0.04425 * 18 17 15 40 40 H 1.08000 * 126.03649 * 179.71342 * 19 18 17 41 41 H 1.08001 * 120.03778 * 0.02562 * 23 22 21 42 42 H 1.08004 * 119.96620 * 180.29596 * 24 23 22 43 43 H 1.07999 * 119.92881 * 179.76155 * 25 24 23 44 44 H 1.07993 * 119.96328 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.03427 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 1.4315 0.1377 -4.8058 9 14 2.9441 -2.0010 -3.9035 10 1 2.0854 -3.2117 -3.9484 11 1 3.7356 -1.9087 -5.1566 12 1 3.8648 -2.0899 -2.7418 13 6 2.0399 -0.7213 1.2492 14 8 1.6291 0.0120 2.4331 15 6 2.0805 -0.4400 3.6205 16 8 2.8749 -1.3594 3.6586 17 6 1.6124 0.1785 4.8681 18 6 0.8018 1.2956 4.9900 19 6 0.6460 1.4915 6.3639 20 7 1.3112 0.5490 6.9833 21 7 1.8900 -0.2324 6.1443 22 6 2.6827 -1.3358 6.4828 23 6 2.5210 -2.5409 5.8116 24 6 3.3081 -3.6258 6.1443 25 6 4.2488 -3.5164 7.1520 26 6 4.4083 -2.3195 7.8261 27 6 3.6284 -1.2291 7.4942 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 3.1261 1.4438 -0.0915 32 1 1.6039 1.9821 -0.8406 33 1 1.7533 1.9292 0.9323 34 1 3.1299 -0.7217 -1.2491 35 1 1.6765 -1.7489 -1.2493 36 1 1.6658 -0.1937 -5.6868 37 1 3.1279 -0.7789 1.2167 38 1 1.6237 -1.7282 1.2828 39 1 0.3831 1.8910 4.1922 40 1 0.0756 2.2797 6.8326 41 1 1.7837 -2.6282 5.0272 42 1 3.1862 -4.5619 5.6195 43 1 4.8604 -4.3675 7.4129 44 1 5.1440 -2.2372 8.6123 45 1 3.7537 -0.2945 8.0208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798876679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:33 Heat of formation + Delta-G solvation = 21.741560 kcal Electronic energy + Delta-G solvation = -27551.382158 eV Core-core repulsion = 23729.064650 eV Total energy + Delta-G solvation = -3822.317508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.09759 -40.17959 -39.32511 -37.36399 -35.60990 -33.83710 -32.35199 -31.69725 -31.09324 -29.51063 -28.03336 -26.72437 -26.49260 -24.43629 -23.47255 -23.29497 -22.31259 -21.48253 -20.24829 -18.87420 -18.05083 -17.36117 -16.91365 -16.77081 -16.55861 -16.14698 -15.81981 -14.97962 -14.75676 -14.31345 -14.10264 -14.00983 -13.93357 -13.73897 -13.67992 -13.18700 -12.93027 -12.62905 -12.44439 -12.27766 -11.99246 -11.57498 -11.37083 -11.17512 -11.10078 -11.03489 -10.77814 -10.63900 -10.50242 -10.42743 -10.16897 -9.90372 -9.79382 -9.58955 -9.49930 -9.25652 -9.04211 -8.73703 -8.56787 -6.06909 -4.04584 0.39583 1.02871 1.18265 1.84068 2.29046 2.76667 2.81010 3.28041 3.36432 3.36980 3.39135 4.32419 4.42147 4.47994 4.55273 4.61924 4.75502 4.82154 5.01155 5.13474 5.22070 5.23643 5.28394 5.30280 5.34155 5.54853 5.61962 5.62738 5.85478 5.92715 5.97186 6.03249 6.12727 6.17707 6.20881 6.30627 6.40790 6.44009 6.61106 6.64079 6.69304 6.90911 7.01904 7.03950 7.15468 7.29946 7.57432 7.71796 7.76829 8.50168 8.97633 9.54978 11.05761 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.002886 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.370315 B = 9701.183457 C =11015.028533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.048 4.048 3 C -0.127 4.127 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.078 3.922 14 O -0.332 6.332 15 C 0.534 3.466 16 O -0.502 6.502 17 C -0.027 4.027 18 C -0.145 4.145 19 C -0.001 4.001 20 N -0.264 5.264 21 N -0.212 5.212 22 C 0.116 3.884 23 C -0.066 4.066 24 C -0.108 4.108 25 C -0.105 4.105 26 C -0.116 4.116 27 C -0.094 4.094 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.175 0.825 40 H 0.195 0.805 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -2.500 25.847 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.005 3.995 14 O -0.246 6.246 15 C 0.376 3.624 16 O -0.391 6.391 17 C -0.150 4.150 18 C -0.173 4.173 19 C -0.177 4.177 20 N -0.095 5.095 21 N 0.004 4.996 22 C 0.027 3.973 23 C -0.086 4.086 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.114 4.114 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.193 0.807 40 H 0.212 0.788 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.336 -3.247 26.650 26.948 hybrid contribution 0.454 -0.570 -1.193 1.398 sum 2.790 -3.817 25.457 25.892 Atomic orbital electron populations 1.21759 0.94237 1.01086 1.01516 1.20601 0.96524 0.96354 0.91374 1.21708 1.00345 0.95346 1.01007 1.19636 0.96302 0.95534 0.92508 1.21024 1.31946 1.13454 0.88364 0.90186 1.24986 0.95680 0.96729 0.95954 1.69897 1.45795 1.40508 0.97890 0.86875 0.81327 0.83963 0.77704 1.20328 1.21390 1.19092 1.23632 1.00259 0.94855 0.80732 1.86562 1.68371 1.55437 1.14279 1.19488 0.78688 0.80433 0.83759 1.90911 1.32053 1.28194 1.87905 1.20439 1.08009 1.01378 0.85173 1.22547 0.99778 0.96920 0.98098 1.23789 1.02571 0.99375 0.91983 1.73353 1.10935 1.03948 1.21288 1.42685 1.34434 1.20416 1.02059 1.17481 0.94496 0.84833 1.00530 1.21019 0.99598 0.90398 0.97546 1.21017 0.95685 0.98469 0.97513 1.21330 0.97653 0.97896 0.95447 1.21015 0.99536 0.92425 1.00512 1.20993 0.93902 1.00102 0.96397 0.93914 0.90887 0.93764 0.93641 0.91153 0.93865 0.96351 0.96828 0.92726 0.91167 0.91383 0.80742 0.78796 0.85310 0.84846 0.85225 0.84936 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.11 37.15 0.30 -2.01 16 2 C -0.05 -0.91 0.62 -154.51 -0.10 -1.00 16 3 C -0.13 -2.31 8.02 37.15 0.30 -2.02 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.61 8.26 -34.44 -0.28 -13.89 16 6 H 0.08 2.26 5.93 -52.49 -0.31 1.95 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 9 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.08 1.32 4.43 37.16 0.16 1.48 16 14 O -0.33 -5.16 8.64 -40.86 -0.35 -5.51 16 15 C 0.53 8.11 7.53 34.24 0.26 8.37 16 16 O -0.50 -8.32 12.69 -19.31 -0.25 -8.57 16 17 C -0.03 -0.36 6.77 -81.97 -0.55 -0.92 16 18 C -0.15 -1.60 10.89 -38.94 -0.42 -2.02 16 19 C 0.00 -0.01 12.03 -17.41 -0.21 -0.22 16 20 N -0.26 -3.27 11.68 30.60 0.36 -2.91 16 21 N -0.21 -2.83 3.45 -7.02 -0.02 -2.85 16 22 C 0.12 1.47 5.82 -83.64 -0.49 0.99 16 23 C -0.07 -0.80 7.30 -39.39 -0.29 -1.09 16 24 C -0.11 -1.07 10.04 -39.61 -0.40 -1.47 16 25 C -0.10 -0.87 10.04 -39.54 -0.40 -1.27 16 26 C -0.12 -0.99 10.04 -39.61 -0.40 -1.39 16 27 C -0.09 -1.00 9.79 -39.39 -0.39 -1.39 16 28 H 0.04 0.67 7.78 -51.93 -0.40 0.27 16 29 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.39 6.80 -51.93 -0.35 1.04 16 33 H 0.04 0.69 7.42 -51.93 -0.39 0.31 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.20 7.98 -51.93 -0.41 0.79 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.20 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.13 1.68 6.67 -52.49 -0.35 1.33 16 42 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -31.60 371.96 -7.94 -39.54 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.30 Total: 0.55 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.08 Total: -16.19 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 1.11 Total: -32.00 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.60 Total: -14.08 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.60 -7.94 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.283 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds