Wall clock time and date at job start Tue Mar 31 2020 15:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47613 * 2 1 4 4 C 1.53008 * 109.46915 * 240.00119 * 2 1 3 5 5 C 1.50697 * 109.46907 * 60.00461 * 4 2 1 6 6 H 1.08001 * 120.00405 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00159 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00074 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47013 * 90.00160 * 9 7 5 11 11 H 1.48497 * 109.47358 * 210.00342 * 9 7 5 12 12 H 1.48501 * 109.46962 * 330.00522 * 9 7 5 13 13 C 1.52999 * 109.47224 * 120.00314 * 2 1 3 14 14 O 1.45196 * 109.47119 * 296.31668 * 13 2 1 15 15 C 1.34833 * 117.00230 * 184.60386 * 14 13 2 16 16 O 1.21562 * 119.99365 * 5.35218 * 15 14 13 17 17 C 1.46907 * 120.00156 * 185.35660 * 15 14 13 18 18 C 1.38559 * 126.91055 * 354.27726 * 17 15 14 19 19 C 1.39651 * 105.36119 * 180.29618 * 18 17 15 20 20 N 1.30933 * 107.92518 * 359.57310 * 19 18 17 21 21 N 1.28435 * 110.96579 * 0.45134 * 20 19 18 22 22 C 1.40019 * 125.21549 * 179.75478 * 21 20 19 23 23 C 1.38878 * 120.07286 * 135.25778 * 22 21 20 24 24 C 1.38106 * 119.92802 * 179.74190 * 23 22 21 25 25 C 1.38291 * 120.07092 * 0.53574 * 24 23 22 26 26 C 1.38290 * 120.14126 * 359.74019 * 25 24 23 27 27 C 1.38113 * 120.07086 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47283 * 300.00103 * 1 2 3 29 29 H 1.09002 * 109.47151 * 59.99731 * 1 2 3 30 30 H 1.09002 * 109.47867 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47750 * 185.10711 * 3 2 1 32 32 H 1.08997 * 109.47355 * 305.11539 * 3 2 1 33 33 H 1.09007 * 109.46978 * 65.10841 * 3 2 1 34 34 H 1.09000 * 109.46883 * 180.02562 * 4 2 1 35 35 H 1.08997 * 109.46896 * 299.99817 * 4 2 1 36 36 H 0.97000 * 119.99594 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47290 * 176.31031 * 13 2 1 38 38 H 1.09006 * 109.47195 * 56.31489 * 13 2 1 39 39 H 1.07997 * 127.32465 * 0.04425 * 18 17 15 40 40 H 1.08000 * 126.03649 * 179.71342 * 19 18 17 41 41 H 1.08001 * 120.03778 * 0.02562 * 23 22 21 42 42 H 1.08004 * 119.96620 * 180.29596 * 24 23 22 43 43 H 1.07999 * 119.92881 * 179.76155 * 25 24 23 44 44 H 1.07993 * 119.96328 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.03427 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 1.4315 0.1377 -4.8058 9 14 2.9441 -2.0010 -3.9035 10 1 2.0854 -3.2117 -3.9484 11 1 3.7356 -1.9087 -5.1566 12 1 3.8648 -2.0899 -2.7418 13 6 2.0399 -0.7213 1.2492 14 8 1.6291 0.0120 2.4331 15 6 2.0805 -0.4400 3.6205 16 8 2.8749 -1.3594 3.6586 17 6 1.6124 0.1785 4.8681 18 6 0.8018 1.2956 4.9900 19 6 0.6460 1.4915 6.3639 20 7 1.3112 0.5490 6.9833 21 7 1.8900 -0.2324 6.1443 22 6 2.6827 -1.3358 6.4828 23 6 2.5210 -2.5409 5.8116 24 6 3.3081 -3.6258 6.1443 25 6 4.2488 -3.5164 7.1520 26 6 4.4083 -2.3195 7.8261 27 6 3.6284 -1.2291 7.4942 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 3.1261 1.4438 -0.0915 32 1 1.6039 1.9821 -0.8406 33 1 1.7533 1.9292 0.9323 34 1 3.1299 -0.7217 -1.2491 35 1 1.6765 -1.7489 -1.2493 36 1 1.6658 -0.1937 -5.6868 37 1 3.1279 -0.7789 1.2167 38 1 1.6237 -1.7282 1.2828 39 1 0.3831 1.8910 4.1922 40 1 0.0756 2.2797 6.8326 41 1 1.7837 -2.6282 5.0272 42 1 3.1862 -4.5619 5.6195 43 1 4.8604 -4.3675 7.4129 44 1 5.1440 -2.2372 8.6123 45 1 3.7537 -0.2945 8.0208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798876679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:32 Heat of formation + Delta-G solvation = 5.785031 kcal Electronic energy + Delta-G solvation = -27552.074085 eV Core-core repulsion = 23729.064650 eV Total energy + Delta-G solvation = -3823.009435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.96799 -41.39492 -40.06499 -38.78986 -36.99652 -34.64384 -34.40096 -32.59079 -31.90297 -30.28376 -29.92051 -28.09081 -27.98531 -25.57056 -24.53414 -24.20260 -23.74049 -22.38045 -21.15753 -20.05869 -19.45507 -18.90891 -18.43958 -17.83782 -17.41084 -17.10985 -16.85292 -16.24848 -15.76621 -15.69234 -15.42854 -15.28721 -15.01605 -14.74127 -14.61891 -14.41236 -14.23710 -14.11457 -13.84397 -13.60166 -13.07095 -12.88004 -12.70695 -12.64769 -12.30110 -12.29856 -12.16395 -12.03327 -11.95147 -11.85897 -11.71838 -11.39658 -11.24054 -10.97214 -10.95468 -10.71504 -10.44059 -10.01340 -9.52213 -8.22887 -6.23963 -0.48690 0.26162 0.33674 0.87774 1.35848 1.38454 1.45032 1.48099 1.73430 1.78976 2.38381 2.63505 3.12065 3.36885 3.56597 3.81066 3.84470 3.88793 3.90176 3.97596 4.13311 4.15768 4.31047 4.34938 4.43491 4.45978 4.54547 4.55592 4.65097 4.83120 4.91935 4.97092 4.99164 5.10360 5.17386 5.18520 5.27802 5.30519 5.36942 5.39022 5.40252 5.43599 5.52782 5.58417 5.63212 5.73842 5.91735 6.36113 6.47010 6.82930 6.84090 7.38507 8.92800 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.002886 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.370315 B = 9701.183457 C =11015.028533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.047 4.047 3 C -0.121 4.121 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.088 3.912 14 O -0.330 6.330 15 C 0.535 3.465 16 O -0.520 6.520 17 C -0.057 4.057 18 C -0.135 4.135 19 C 0.008 3.992 20 N -0.281 5.281 21 N -0.220 5.220 22 C 0.087 3.913 23 C -0.088 4.088 24 C -0.116 4.116 25 C -0.100 4.100 26 C -0.111 4.111 27 C -0.106 4.106 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.195 0.805 40 H 0.235 0.765 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -3.339 28.568 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.047 4.047 3 C -0.179 4.179 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.174 1.174 13 C 0.014 3.986 14 O -0.244 6.244 15 C 0.379 3.621 16 O -0.409 6.409 17 C -0.180 4.180 18 C -0.163 4.163 19 C -0.168 4.168 20 N -0.112 5.112 21 N -0.004 5.004 22 C -0.002 4.002 23 C -0.108 4.108 24 C -0.134 4.134 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.126 4.126 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.213 0.787 40 H 0.251 0.749 41 H 0.128 0.872 42 H 0.167 0.833 43 H 0.181 0.819 44 H 0.182 0.818 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.249 -4.089 29.398 29.858 hybrid contribution 0.122 -0.235 -1.934 1.953 sum 3.371 -4.324 27.463 28.005 Atomic orbital electron populations 1.21684 0.93620 1.01338 1.01376 1.20456 0.96992 0.96323 0.90917 1.21641 0.99977 0.95014 1.01237 1.19580 0.96112 0.95681 0.92608 1.21299 1.30483 1.12412 0.89978 0.93063 1.25839 0.97404 0.99995 0.95764 1.70043 1.48000 1.42677 0.98480 0.85885 0.79835 0.80284 0.78023 1.19460 1.21443 1.17416 1.23308 0.99961 0.94794 0.80502 1.86525 1.68437 1.55269 1.14174 1.19728 0.78285 0.80161 0.83911 1.90898 1.32958 1.29042 1.88042 1.20483 1.09931 1.02803 0.84776 1.22916 0.98326 0.95782 0.99256 1.24479 1.01542 0.99212 0.91560 1.73350 1.11458 1.04577 1.21807 1.42815 1.34875 1.20814 1.01929 1.17822 0.95588 0.85002 1.01741 1.21025 1.00429 0.91436 0.97947 1.21320 0.95619 0.98404 0.98094 1.21736 0.96948 0.98909 0.94198 1.21439 0.99129 0.91651 1.00657 1.21204 0.94037 1.01152 0.96196 0.91467 0.93521 0.93329 0.93858 0.93525 0.91429 0.96402 0.96287 0.92776 0.91446 0.90723 0.78747 0.74911 0.87193 0.83345 0.81908 0.81755 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.11 71.98 0.58 -3.75 16 2 C -0.05 -1.72 0.62 -52.18 -0.03 -1.75 16 3 C -0.12 -4.37 8.02 71.98 0.58 -3.79 16 4 C 0.00 -0.11 3.11 29.85 0.09 -0.01 16 5 C -0.50 -27.35 8.26 25.60 0.21 -27.14 16 6 H 0.05 3.02 5.93 -2.91 -0.02 3.00 16 7 C 0.01 0.36 5.47 84.65 0.46 0.83 16 8 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 9 Si 0.93 43.69 27.47 68.60 1.88 45.58 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.25 -10.96 6.54 99.48 0.65 -10.30 16 13 C 0.09 2.84 4.43 71.98 0.32 3.16 16 14 O -0.33 -9.78 8.64 -57.45 -0.50 -10.28 16 15 C 0.54 15.98 7.53 70.09 0.53 16.51 16 16 O -0.52 -17.23 12.69 19.63 0.25 -16.98 16 17 C -0.06 -1.51 6.77 40.70 0.28 -1.24 16 18 C -0.13 -2.68 10.89 22.69 0.25 -2.44 16 19 C 0.01 0.14 12.03 85.17 1.02 1.16 16 20 N -0.28 -6.61 11.68 -57.12 -0.67 -7.27 16 21 N -0.22 -5.79 3.45 -176.14 -0.61 -6.40 16 22 C 0.09 2.22 5.82 38.14 0.22 2.44 16 23 C -0.09 -2.18 7.30 22.39 0.16 -2.02 16 24 C -0.12 -2.17 10.04 22.25 0.22 -1.95 16 25 C -0.10 -1.41 10.04 22.29 0.22 -1.19 16 26 C -0.11 -1.61 10.04 22.25 0.22 -1.39 16 27 C -0.11 -2.16 9.79 22.39 0.22 -1.94 16 28 H 0.07 2.01 7.78 -2.39 -0.02 1.99 16 29 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.88 6.80 -2.39 -0.02 1.86 16 33 H 0.07 2.07 7.42 -2.38 -0.02 2.05 16 34 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 35 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.07 2.23 7.98 -2.39 -0.02 2.21 16 38 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.11 3.01 6.67 -2.91 -0.02 3.00 16 42 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -70.33 371.96 7.16 -63.17 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.94 Total: 14.87 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 5.57 Total: -24.51 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.98 Total: -71.84 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.25 Total: -27.26 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -70.33 7.16 -63.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798876679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.955 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds